mRNA_Ecto-sp9_F_contig11715.1433.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11715.1433.1
Unique NamemRNA_Ecto-sp9_F_contig11715.1433.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11715.1433.1 vs.
Match: E3 (ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D3_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 7.900e-34
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 2 
Query:    2 GDQGGGGAGDPLAALPPDFQAVARIVVRGVVLFLAGVCWSSLDTYDPASQEPITPAPGASDSGSGGTR 205
            GDQGGGGAGDPLAALP DFQAVARIVVRGVVLFLAGVCWSSLDTYDPASQEP TPAPGASDSGSGGTR
Sbjct:  163 GDQGGGGAGDPLAALPTDFQAVARIVVRGVVLFLAGVCWSSLDTYDPASQEPTTPAPGASDSGSGGTR 230
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11715.1433.1 vs.
Match: E3 (ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.620e-25
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 2 
Query:   62 AVARIVVRGVVLFLAGVCWSSLDTYDPASQEPITPAPGASDSGSGGTRRRSGPSLSS 232
            AVARIVVRGVVLFL GVCWSSLDTYDPASQEP  PAPGAS SGSGGTRRRSGPSLSS
Sbjct:   81 AVARIVVRGVVLFLTGVCWSSLDTYDPASQEPTAPAPGASGSGSGGTRRRSGPSLSS 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11715.1433.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
E37.900e-3497.06ubiquitin-protein ligase n=1 Tax=Ectocarpus silicu... [more]
E34.620e-2592.98ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CC... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11715contigEcto-sp9_F_contig11715:2120..3082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size210
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11715.1433.1prot_Ecto-sp9_F_contig11715.1433.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11715 2120..3024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928431.203327-CDS-Ecto-sp9_F_contig11715:2119..21801622928431.203327-CDS-Ecto-sp9_F_contig11715:2119..2180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11715 2120..2180 +
1692277868.6307836-CDS-Ecto-sp9_F_contig11715:2119..21801692277868.6307836-CDS-Ecto-sp9_F_contig11715:2119..2180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11715 2120..2180 +
1622928431.2182167-CDS-Ecto-sp9_F_contig11715:2875..30241622928431.2182167-CDS-Ecto-sp9_F_contig11715:2875..3024Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11715 2876..3024 +
1692277868.6384726-CDS-Ecto-sp9_F_contig11715:2875..30241692277868.6384726-CDS-Ecto-sp9_F_contig11715:2875..3024Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11715 2876..3024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928431.232544-UTR-Ecto-sp9_F_contig11715:3024..30821622928431.232544-UTR-Ecto-sp9_F_contig11715:3024..3082Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11715 3025..3082 +
1692277868.6469474-UTR-Ecto-sp9_F_contig11715:3024..30821692277868.6469474-UTR-Ecto-sp9_F_contig11715:3024..3082Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11715 3025..3082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11715.1433.1

>prot_Ecto-sp9_F_contig11715.1433.1 ID=prot_Ecto-sp9_F_contig11715.1433.1|Name=mRNA_Ecto-sp9_F_contig11715.1433.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=70bp
RRPGWWRSRRSPRCAAAGLSGGGPYRREGGGPLPGRRLLEFPRHLRPGFP
GTDNPRPRSLRQRQRRDSA*
back to top

mRNA from alignment at Ecto-sp9_F_contig11715:2120..3082+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11715.1433.1 ID=mRNA_Ecto-sp9_F_contig11715.1433.1|Name=mRNA_Ecto-sp9_F_contig11715.1433.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=963bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11715:2120..3082+ (Ectocarpus species9 EcSCA_722f female)
AGGAGACCAGGGTGGTGGCGGAGCCGGCGATCCCCTCGCTGCGCTGCCGC
CGGACTTTCAGGCGAGGGACGGGGGGTGGAGGTCTCGTCGTTGTTGCGTT
TCGTGTATGTTGCGGTTGGTGGCGGGATGGTGGTTAATGCTGTCGGTGAT
GATTGTTCTTGCTGCTGACGTTTGTCGATGTGGTTGTTGGTGTTGTTGTC
GTGGTTGATTGTTGTGGTGTGTGGTGGCGCGGATTGCTGTTGTGTTGTTG
GTTCTGTTTTCGCTGTATGATGCGCTGTACACCGTTCCTCCGTCACTGTG
TATCATGTCGGGTAAAATTGACCGCCCCACCTACTGCACAACCACGACTT
TTCCCGTACAGTACCCTCTGTGACCGATTCAACGGCAGTCACTCATGGCC
GCATCAACCCTCCCGTCTCTTTCTCGTTCTTTTGTTGTGCTGCACGGCCG
TGCCTGGCATATCCTACGCCGCACGTCTCTCTCCCTTTCTCATCGCTCTT
TCTCCCTCATTTTTTTTTTTTTTCATCGACATCTCTTGTGCAACACACAC
ACGACCATCGAACCGCCTTCTATCCTGTCGCCTTTTCACTGGCATTCTTT
TTTTTTTTTTGTCAGTATGACCGAACGAATCCATCTCTATCTACAGAAAA
GAGTCTAAGATAGATTAGCAATGGATCCCGTGTGCACACACGCGCTACAT
ATCGAACCGACATCTATCCCGCCGCTTTTTTTTTTTTTGTCTCCCTCTCT
TCTCAGGCGGTGGCCCGTATCGTCGTGAGGGGGGTGGTCCTCTTCCTGGC
CGGCGTCTGCTGGAGTTCCCTCGACACCTACGACCCGGCTTCCCAGGAAC
CGATAACCCCCGCCCCCGGAGCCTCCGACAGCGGCAGCGGCGGGACTCGG
CGTAGGAGCGGGCCTTCCTTGTCCTCTTCCGCGGATAATGCCTCTTCCGC
CGCCACCGCCGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11715:2120..3082+

>mRNA_Ecto-sp9_F_contig11715.1433.1 ID=mRNA_Ecto-sp9_F_contig11715.1433.1|Name=mRNA_Ecto-sp9_F_contig11715.1433.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11715:2120..3082+ (Ectocarpus species9 EcSCA_722f female)
AGGAGACCAGGGTGGTGGCGGAGCCGGCGATCCCCTCGCTGCGCTGCCGC
CGGACTTTCAGAGGAGACCAGGGTGGTGGCGGAGCCGGCGATCCCCTCGC
TGCGCTGCCGCCGGACTTTCAGGCGGTGGCCCGTATCGTCGTGAGGGGGG
TGGTCCTCTTCCTGGCCGGCGTCTGCTGGAGTTCCCTCGACACCTACGAC
CCGGCTTCCCAGGAACCGATAACCCCCGCCCCCGGAGCCTCCGACAGCGG
CAGCGGCGGGACTCGGCGTAGGCGGTGGCCCGTATCGTCGTGAGGGGGGT
GGTCCTCTTCCTGGCCGGCGTCTGCTGGAGTTCCCTCGACACCTACGACC
CGGCTTCCCAGGAACCGATAACCCCCGCCCCCGGAGCCTCCGACAGCGGC
AGCGGCGGGACTCGGCGTAG
back to top