mRNA_Ecto-sp9_F_contig117.1416.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig117.1416.1
Unique NamemRNA_Ecto-sp9_F_contig117.1416.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX98_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 4.340e-46
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    1 MTAAGENGCVGEVVNSGAVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGTG 252
            MTAAGENG VGEVVNSGAVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQ SDPAHLQGTAHFCEHMLFLGTG
Sbjct:    1 MTAAGENGSVGEVVNSGAVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQTSDPAHLQGTAHFCEHMLFLGTG 84
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: LOW (QUALITY PROTEIN: insulin-degrading enzyme-like n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C4793ED)

HSP 1 Score: 90.9 bits (224), Expect = 9.150e-21
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   52 AVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            ++Q SE+D REYR +   N ++VLLISDP TDK AAA+DV VG  SDP  L G AHFCEHMLF+GT
Sbjct:   25 SIQKSEEDQREYRALVLDNDLKVLLISDPATDKSAAALDVHVGSMSDPRELPGLAHFCEHMLFMGT 90
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: Hypothetical (protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X669_9CRUS)

HSP 1 Score: 89.7 bits (221), Expect = 1.170e-20
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   64 SEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            SEQDDR YR +   N M+V+LISDPETDK AA++D+ VG  SDP  L+G AHFCEHMLFLGT
Sbjct:   17 SEQDDRFYRGLELQNGMKVILISDPETDKSAASLDLHVGSLSDPDDLEGLAHFCEHMLFLGT 78
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: insulin-degrading (enzyme-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A6E11)

HSP 1 Score: 87.0 bits (214), Expect = 1.350e-20
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   64 SEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            S +DDR+YR +   N+M+VL+ISDP TDK AAAMDV +G  SDP    G AHFCEHMLFLGT
Sbjct:   14 SPRDDRQYRGLQLKNEMKVLVISDPSTDKSAAAMDVHIGNLSDPDDFPGLAHFCEHMLFLGT 75
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: Metalloenzyme, (LuxS/M16 peptidase-like protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397W2W9_9GLOM)

HSP 1 Score: 94.0 bits (232), Expect = 1.510e-20
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   46 SGAVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            S +++ SE DDREYR +  PN ++ LLISD ETDK +AA+DV VGQ SDP +LQG AHFCEH+LF+GT
Sbjct:   24 STSLEKSENDDREYRLILLPNGLEALLISDSETDKSSAAIDVHVGQISDPPNLQGLAHFCEHLLFMGT 91
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: Uncharacterized (protein n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4V1ITY3_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 7.170e-20
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   67 EQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            +QDDREYR+V  PNK+ VLLISDPE DK AAAMDV VG   DP    G AHFCEH+LF+GT
Sbjct:   22 QQDDREYRYVELPNKLAVLLISDPEQDKSAAAMDVNVGHLRDPDDFPGLAHFCEHLLFMGT 82
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: Peptidase_M16 (domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A405_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.480e-20
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   37 VVNSGAVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            V   G + +S  D+R+YRHV   N + VLL+SD E +K AAAMDVRVG  SDP HL G AHF EHMLF+GT
Sbjct:    5 VRQKGGIDVSAGDERDYRHVELANGLCVLLVSDSEAEKSAAAMDVRVGHQSDPDHLLGLAHFLEHMLFMGT 75
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: Insulin-degrading-like (enzyme, metalloprotease family M16A (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6Z0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.770e-20
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   49 GAVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            G +Q+S QD+R Y+    PN++QVLL+SDP T+K AAA+ V+VG  SDP +L G AHFCEHMLFLGT
Sbjct:   16 GGIQVSAQDNRLYKAFVLPNQLQVLLVSDPSTEKSAAALAVQVGHQSDPHNLPGLAHFCEHMLFLGT 82
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: Ste23-metalloprotease (involved in a-factor processing n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0M8MXH7_9BASI)

HSP 1 Score: 91.7 bits (226), Expect = 9.800e-20
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   40 VNSGAVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            V  GA++  + D REYR V   N ++VL+ISDP TDK +AAMDVRVG  SDP+ LQG AHFCEH+LF+GT
Sbjct:   42 VYEGAMEKPKTDQREYRLVRLANDLEVLVISDPTTDKASAAMDVRVGHLSDPSELQGMAHFCEHLLFMGT 111
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BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Match: Insulin-degrading (enzyme n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4TBU0_9TREM)

HSP 1 Score: 91.3 bits (225), Expect = 1.250e-19
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   43 NSGAVQISEQDDREYRHVTFPNKMQVLLISDPETDKEAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGT 249
            +S  V  S  DDREY+++  PNKM+VLLISDP TDK AA M V VG  SDP  L G AHFCEHMLFLGT
Sbjct:   20 SSVIVTKSPYDDREYKYMELPNKMRVLLISDPNTDKAAACMAVNVGSLSDPHQLPGLAHFCEHMLFLGT 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig117.1416.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.340e-4697.62protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX98... [more]
LOW9.150e-2163.64QUALITY PROTEIN: insulin-degrading enzyme-like n=1... [more]
Hypothetical1.170e-2067.74protein n=1 Tax=Darwinula stevensoni TaxID=69355 R... [more]
insulin-degrading1.350e-2064.52enzyme-like n=1 Tax=Acropora digitifera TaxID=7077... [more]
Metalloenzyme,1.510e-2063.24LuxS/M16 peptidase-like protein n=2 Tax=Gigaspora ... [more]
Uncharacterized7.170e-2068.85protein n=2 Tax=Caulochytrium protostelioides TaxI... [more]
Peptidase_M169.480e-2059.15domain-containing protein n=3 Tax=Aphanomyces asta... [more]
Insulin-degrading-like9.770e-2061.19enzyme, metalloprotease family M16A (Fragment) n=1... [more]
Ste23-metalloprotease9.800e-2061.43involved in a-factor processing n=1 Tax=Malassezia... [more]
Insulin-degrading1.250e-1965.22enzyme n=1 Tax=Paragonimus heterotremus TaxID=1002... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig117contigEcto-sp9_F_contig117:50067..51520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue2.6e-39
Seed eggNOG ortholog2880.D7FX98
KEGG koko:K01408
KEGG Pathwayko05010,map05010
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
EC3.4.24.56
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928428.922149-CDS-Ecto-sp9_F_contig117:50066..501831622928428.922149-CDS-Ecto-sp9_F_contig117:50066..50183Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 50067..50183 +
1692277867.7199695-CDS-Ecto-sp9_F_contig117:50066..501831692277867.7199695-CDS-Ecto-sp9_F_contig117:50066..50183Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 50067..50183 +
1622928428.9439273-CDS-Ecto-sp9_F_contig117:51385..515201622928428.9439273-CDS-Ecto-sp9_F_contig117:51385..51520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 51386..51520 +
1692277867.7298834-CDS-Ecto-sp9_F_contig117:51385..515201692277867.7298834-CDS-Ecto-sp9_F_contig117:51385..51520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 51386..51520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig117.1416.1prot_Ecto-sp9_F_contig117.1416.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig117 50067..51520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig117.1416.1

>prot_Ecto-sp9_F_contig117.1416.1 ID=prot_Ecto-sp9_F_contig117.1416.1|Name=mRNA_Ecto-sp9_F_contig117.1416.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=84bp
MTAAGENGCVGEVVNSGAVQISEQDDREYRHVTFPNKMQVLLISDPETDK
EAAAMDVRVGQASDPAHLQGTAHFCEHMLFLGTG
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mRNA from alignment at Ecto-sp9_F_contig117:50067..51520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig117.1416.1 ID=mRNA_Ecto-sp9_F_contig117.1416.1|Name=mRNA_Ecto-sp9_F_contig117.1416.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1454bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:50067..51520+ (Ectocarpus species9 EcSCA_722f female)
ATGACAGCTGCCGGAGAGAATGGGTGTGTGGGAGAGGTGGTGAACAGCGG
CGCGGTGCAGATTTCTGAGCAGGATGATCGGGAATACCGGCATGTGACGT
TTCCGAACAAGATGCAGGTTAGTCTTTGATTACGGAACCAGGCGAACAGA
GCGTACCGCAGCAGCACTTGCCCCGTTGTTTGTGCACTCAAGGCCCGTCA
ATCCTAGCTGCTTCTTCTGCAGTTCACCGAATGCTTGTACGTTGCTTGGA
CTGGTGGTGACTGCAGCGCAACAAGAGTTCACAGGTTCACAGGTAGTCTT
CGCACGGCACATATTGCCTTCCAGCCCTCATCCGACGGCGAGGCCGACAC
CGAGGTTCAATTTGCGCCGGTAAGGAAAACACACCTCTACTGGAAGGAAC
ACACACACACCTCTTATGTCTATTAAGGAAAAATAAATACACGCACAGAA
AGACTACCCATTCGAGATATACCCACAGTCGAACGGGATGTGGTGTCTAT
TGTTGTTGCTGTTGCTGTTGTACATGTATACTAGTTGTCGTCGTCGTCTT
CCATTCTACCGTTGCCATCCCTGCTCAGTGAAAAGGGAGCAAGCGACACA
GATGGATGGCCTTCAGCAGAAACAAGCAAACCGGGAGGAGAGTGCTGTTG
GAACAGCAACACTTTCGGGCCATTGTGAACACATCAAGCACGGTATACTG
CCGGTTCTCCCGACGCATACCGTAGGTGGTGTGAGATACCACATCCACAA
AAGGTCCCGCACGCCCTTCGAAAACGCACAGAATGTTCCACACGCGTTGT
GGTTGATTTTATTTTTGGAGTCCCGAAAATGCGCCAGTTTTTCTCACAGT
CTCGGAAGGTATGCATTACCACACCCCTTCGGTTGAGCCGCATGTTGTCC
ACAACGCCCCCTTAGTACAGTATATATTTTATAGAAAGTGAACATCTCAC
AGAAAGACTACCCGTTAGAGATATAACCCCAGTCGAAAGGGATGTGTCTT
GTCCACATGGCGGTATCACACGTGGTATCCCAACAACAGAAGGCAGCATC
CGTATGGACACCAACCGCCAACAGCTGACACCCTCGAGACGTTTGGATCC
CTTGTTTCGGCCACAGACTGCTGCTGTGTAGACTAGGCGTAAAAGCTACA
TATGTAAGTCTAGAAACAATCTAGACTCGGGCGATAACTTTTTTGTAGAT
GTGGAAACAACAAAATAACAACAACAACAACAACAACAACAACAACAACA
ACAACCGGCAGTAACGACGCGAAGACAGTGCCAGAGTAAGTAACATAATG
ACGAAATTGCTGTTGTTAGGTTTTGCTGATTAGCGACCCCGAAACGGACA
AGGAGGCGGCCGCAATGGATGTACGGGTAGGCCAGGCCTCGGACCCGGCA
CACCTACAGGGAACGGCGCACTTCTGCGAGCACATGCTTTTCCTTGGCAC
AGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig117:50067..51520+

>mRNA_Ecto-sp9_F_contig117.1416.1 ID=mRNA_Ecto-sp9_F_contig117.1416.1|Name=mRNA_Ecto-sp9_F_contig117.1416.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:50067..51520+ (Ectocarpus species9 EcSCA_722f female)
ATGACAGCTGCCGGAGAGAATGGGTGTGTGGGAGAGGTGGTGAACAGCGG
CGCGGTGCAGATTTCTGAGCAGGATGATCGGGAATACCGGCATGTGACGT
TTCCGAACAAGATGCAGATGACAGCTGCCGGAGAGAATGGGTGTGTGGGA
GAGGTGGTGAACAGCGGCGCGGTGCAGATTTCTGAGCAGGATGATCGGGA
ATACCGGCATGTGACGTTTCCGAACAAGATGCAGGTTTTGCTGATTAGCG
ACCCCGAAACGGACAAGGAGGCGGCCGCAATGGATGTACGGGTAGGCCAG
GCCTCGGACCCGGCACACCTACAGGGAACGGCGCACTTCTGCGAGCACAT
GCTTTTCCTTGGCACAGGCGTTTTGCTGATTAGCGACCCCGAAACGGACA
AGGAGGCGGCCGCAATGGATGTACGGGTAGGCCAGGCCTCGGACCCGGCA
CACCTACAGGGAACGGCGCACTTCTGCGAGCACATGCTTTTCCTTGGCAC
AGGC
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