mRNA_Ecto-sp9_F_contig117.1415.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Flagellar (associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX97_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.910e-20 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2
Query: 233 MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYHG 397
MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYHG
Sbjct: 1 MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYHG 55
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Phosphatase (inhibitor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q2_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 9.400e-17 Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 2
Query: 176 RLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYH 394
RL+ R +V W +V++NE G+KSSKRCCIFHK+R F ESDS + W++PKPGRP Q+YH
Sbjct: 32 RLQARKAVQWDEEVVDNENAGRKSSKRCCIFHKQRKFGESDSEESSSDLDDEEREKYWSEPKPGRPNRGQVYH 104
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GFS9_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 8.410e-13 Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 2
Query: 164 VLTLRLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDS 301
+LTL L PRPSV W VI+NEG+G+KSSKRCCIFHK+R F ES +
Sbjct: 17 ILTLTLAPRPSVRWEEGVIDNEGLGRKSSKRCCIFHKQRGFGESST 62
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNT7_PHATC) HSP 1 Score: 72.8 bits (177), Expect = 1.020e-12 Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 2
Query: 167 LTLRLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAH-QLYH 394
L L L+ PSV W DVI+NEGMG+KSSKRCCIFHK+R FDES + R+ A+PK + Q YH
Sbjct: 62 LVLTLQAHPSVRWENDVIDNEGMGRKSSKRCCIFHKQRPFDESSTDSSDQDGNDDRDKRKIARPKKSKEVPDFQRYH 138
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y5A8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.970e-12 Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 2
Query: 164 VLTLRLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDS 301
VLTL L+ RPSV W +V++NEG+G+KSSKRCCIFHK+R FDES +
Sbjct: 62 VLTLTLQARPSVRWDENVVDNEGLGRKSSKRCCIFHKQRAFDESST 107
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0T4_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.830e-12 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2
Query: 164 VLTLRLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDS 301
VL L L+ RPSVTW DV++NEG+G+KSSKRCCIFHK+R F ES +
Sbjct: 72 VLVLNLQARPSVTWDEDVVDNEGLGRKSSKRCCIFHKQRPFGESST 117
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG19_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 3.210e-12 Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 2
Query: 161 AVLTLRLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYH 394
A L L L P+P VTW+ DV++NE M KKSSKRCCIFHK+R F ESDSXXXXXXXXXX A PK K H+ YH
Sbjct: 57 APLRLVLEPKPRVTWANDVVDNEHMDKKSSKRCCIFHKQRCFGESDSXXXXXXXXXXAP----APPKNRNYKPHETYH 130
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Protein (phosphatase inhibitor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJC0_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.050e-11 Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 2
Query: 164 VLTLRLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDS 301
VL L+L PRP V W DV++NE M KKSSKRCCIFHKKR F ES S
Sbjct: 53 VLRLQLDPRPHVKWDQDVVDNEHMNKKSSKRCCIFHKKRAFGESSS 98
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ92_THAPS) HSP 1 Score: 70.1 bits (170), Expect = 2.230e-11 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 2
Query: 164 VLTLRLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDS 301
VL L L+PR VTW DV+NNEG+G+KSSKRCCI+HK+R F ES +
Sbjct: 74 VLRLTLQPRSHVTWDDDVVNNEGLGRKSSKRCCIWHKQREFGESST 119
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7B7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.210e-11 Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 2
Query: 164 VLTLRLRPRPSVTWSADVINNEGMGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYH 394
VL L LR R +V W V++NEGMG+KSSKRCCIFHK+R F ES + R+ A+PK Q +H
Sbjct: 50 VLRLTLRGRNNVQWDEAVVDNEGMGRKSSKRCCIFHKRRAFGESSTDSSEEEDKDGNGNRKIARPKKKEVPDFQRFH 126 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig117.1415.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig117.1415.1 >prot_Ecto-sp9_F_contig117.1415.1 ID=prot_Ecto-sp9_F_contig117.1415.1|Name=mRNA_Ecto-sp9_F_contig117.1415.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=165bp GRSDGGTSGRRERHRDGSAAAAAAAAAAGRGRNSTDPVAAGRNRRRRRSDback to top mRNA from alignment at Ecto-sp9_F_contig117:46347..49831- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig117.1415.1 ID=mRNA_Ecto-sp9_F_contig117.1415.1|Name=mRNA_Ecto-sp9_F_contig117.1415.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3485bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:46347..49831- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig117:46347..49831- >mRNA_Ecto-sp9_F_contig117.1415.1 ID=mRNA_Ecto-sp9_F_contig117.1415.1|Name=mRNA_Ecto-sp9_F_contig117.1415.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:46347..49831- (Ectocarpus species9 EcSCA_722f female)back to top |