mRNA_Ecto-sp9_F_contig117.1414.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig117.1414.1
Unique NamemRNA_Ecto-sp9_F_contig117.1414.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig117.1414.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig117contigEcto-sp9_F_contig117:42864..43376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size405
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928428.1228583-UTR-Ecto-sp9_F_contig117:42863..429711622928428.1228583-UTR-Ecto-sp9_F_contig117:42863..42971Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig117 42864..42971 +
1692277867.314355-UTR-Ecto-sp9_F_contig117:42863..429711692277867.314355-UTR-Ecto-sp9_F_contig117:42863..42971Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig117 42864..42971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928428.134813-CDS-Ecto-sp9_F_contig117:42971..433761622928428.134813-CDS-Ecto-sp9_F_contig117:42971..43376Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 42972..43376 +
1692277867.3215332-CDS-Ecto-sp9_F_contig117:42971..433761692277867.3215332-CDS-Ecto-sp9_F_contig117:42971..43376Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 42972..43376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig117.1414.1prot_Ecto-sp9_F_contig117.1414.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig117 42972..43376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig117.1414.1

>prot_Ecto-sp9_F_contig117.1414.1 ID=prot_Ecto-sp9_F_contig117.1414.1|Name=mRNA_Ecto-sp9_F_contig117.1414.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=135bp
MHTATNVDVVEMVGVQVHCYSWCCGRQAVMDGTRSFTFAFFLPRKYIVYN
KCCGRQADTSNTAFHFFLSSSRAFFCCKRKRRIGCHVVSLLHVAGRPGKS
VGVFEWSPRQQARGHCCFGADGRFCQNMTQMDDP*
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mRNA from alignment at Ecto-sp9_F_contig117:42864..43376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig117.1414.1 ID=mRNA_Ecto-sp9_F_contig117.1414.1|Name=mRNA_Ecto-sp9_F_contig117.1414.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=513bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:42864..43376+ (Ectocarpus species9 EcSCA_722f female)
TGAAAATGGTGGTGGTGGTGGTGGTGGTAATGATGGCACGCCAACTGACG
GCAAAAAACGACGAGACGTGTTATTGTTGCTGCTGTTTCGACGTGTTCGA
CCTGATGTATGCATACAGCAACGAATGTTGATGTTGTAGAAATGGTTGGC
GTGCAAGTACATTGTTACTCGTGGTGTTGTGGTAGACAAGCAGTTATGGA
TGGAACACGGTCGTTCACATTCGCTTTCTTTTTGCCTCGAAAGTACATTG
TTTACAACAAGTGTTGTGGTAGACAAGCAGATACATCGAACACGGCCTTC
CACTTTTTTCTTTCCTCTTCTCGCGCTTTTTTTTGCTGCAAGAGAAAGCG
ACGCATCGGGTGTCATGTTGTTTCCCTCCTGCATGTAGCAGGCAGGCCCG
GAAAGTCGGTGGGAGTATTTGAGTGGTCCCCACGACAACAAGCCAGAGGC
CACTGTTGTTTCGGCGCAGACGGACGATTTTGTCAGAACATGACACAGAT
GGACGATCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig117:42864..43376+

>mRNA_Ecto-sp9_F_contig117.1414.1 ID=mRNA_Ecto-sp9_F_contig117.1414.1|Name=mRNA_Ecto-sp9_F_contig117.1414.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:42864..43376+ (Ectocarpus species9 EcSCA_722f female)
ATGCATACAGCAACGAATGTTGATGTTGTAGAAATGGTTGGCGTGCAAGT
ACATTGTTACTCGTGGTGTTGTGGTAGACAAGCAGTTATGGATGGAACAC
GGTCGTTCACATTCGCTTTCTTTTTGCCTCGAAAGTACATTGTTTACAAC
AAGTGTTGTGGTAGACAAGCAGATACATCGAACACGGCCTTCCACTTTTT
TCTTTCCTCTTCTCGCGCTTTTTTTTGCTGCAAGAGAAAGCGACGCATCG
GGTGTCATGTTGTTTCCCTCCTGCATGTAGCAGGCAGGCCCGGAAAGTCG
GTGGGAGTATTTGAGTGGTCCCCACGACAACAAGCCAGAGGCCACTGTTG
TTTCGGCGCAGACGGACGATTTTGTCAGAACATGACACAGATGGACGATC
CGTGAATGCATACAGCAACGAATGTTGATGTTGTAGAAATGGTTGGCGTG
CAAGTACATTGTTACTCGTGGTGTTGTGGTAGACAAGCAGTTATGGATGG
AACACGGTCGTTCACATTCGCTTTCTTTTTGCCTCGAAAGTACATTGTTT
ACAACAAGTGTTGTGGTAGACAAGCAGATACATCGAACACGGCCTTCCAC
TTTTTTCTTTCCTCTTCTCGCGCTTTTTTTTGCTGCAAGAGAAAGCGACG
CATCGGGTGTCATGTTGTTTCCCTCCTGCATGTAGCAGGCAGGCCCGGAA
AGTCGGTGGGAGTATTTGAGTGGTCCCCACGACAACAAGCCAGAGGCCAC
TGTTGTTTCGGCGCAGACGGACGATTTTGTCAGAACATGACACAGATGGA
CGATCCGTGA
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