mRNA_Ecto-sp9_F_contig117.1407.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig117.1407.1 vs.
Match: KIX_2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE) HSP 1 Score: 1121 bits (2899), Expect = 0.000e+0 Identity = 847/1193 (71.00%), Postives = 854/1193 (71.58%), Query Frame = 1
Query: 1 MVGVSAGMVMSTGHTGGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRAEELRNIYQEDIHYFVQHGSSLLKKLHKTRPASQNSEQVLKLVQYVKEGHNALLYINRCHDTGHVPSAASLQSLEHTLIRVHKASNALQVMIRDHSKTQYGXXXXXXXXXXXXXXX--QQPSRQYSADQNAFSPGQSNSTLGPLAGTAGGGGTPVSSVGPTLTGSIDGGDSAALSLDPIPLPDTGTGYRTPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHERQQVETARRQRAHXXXXXXXXXXXXXXX----------------HQQQLRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNAASASSGALPDTRLSLMQGESSNDMFWGSVDIGDLEPTPLSGSLEDQVIPPNLEEGGDFDMPVEDFLDLDPFPLEGMPLDGDDWLSTQSLPEGSGNKPGGSPRVGNVSMDSSAVGGSGGASTRPGAYVPPPGGLGXXXXXXXXXXXXXXXXXXQGLPQLQTQLSVGGLTPLGNGASGVAPINPADPIPE-------------------------------------------------------------------------------------------------------------------------GNPALLQNVINHQLGPMPRLLNGLVSGCTVVVPAPSVAAVPPAGSGSRGSGAAQDGTXXXXXXXXXXXXXLSNKRTKDECGDGDDGRPEKKIALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMALLKAKVGRLFSLSAEYTHVRTGVVPENGSPAARGGGEVGKKQEAGLTNXXXXXXXXXXXXXXXXXXAGDVKSDVGGGGLRRVLASVKAVRAGHFVVHIKFDVAGSNKCRPCDVSVLSWNEAQEGEIASAGGADSRVKVEGGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHAFQALHGFVNKRTDGNVGEALASFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRTSDGSALLAESLAGTPQREPQSPASSQAASAAGGTGVATAEA 3162
MVGVSAGMVMSTGHTGG G SRRAEELR IYQEDIHYFVQHGSSLLKKLHKTRPASQNSEQVLKLVQYVKEGHNALLYINRCH+TGHVPSAASLQSLEHTLIRVHKASNALQVMIRDHSKTQYG XXXXXXXXXXXX QQPSRQYSADQNAFSPGQSNSTLGPL GTAGG TPV SVGPTLTGSIDGGDSAALSLD IPLPDTGTGYRTPQ XXXXXX +QQV TARRQRAH XXXXXXXXXX QQQL Q XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX ASASSGALPD RL L QGESSNDMFWGSVDIGDLEPTPLSG LEDQVIPPNLEEGGDFDMPVEDFLDLDPFPLEGMPLDGDDWLSTQ LPEGSGNKPGGSPR GN SMDSSAVGG GGASTRPGAYVPPPG LG QGLPQLQTQLSVGGLTPLGNGASGVAPINPADPIPE GNPALL NVINHQLGPMPRLLNGLVSGCTVVVPAPSVAAVPPA SGSRGSGAAQDGT XXXXXXXXXXX LSNKRTKDECGDGDDGRPEKKIAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMALL+AKVGRLFSLSAEYTHVRTG + NGS AA GG EVGKKQE GLT XXXXXXXXXXXXXX AGDVK DVGGGGLRRVL+ VKAVRAGHFVVHI FDVAGSN+CRPCDVSVLSWNEAQEGE ASAGGAD+RVKVE GGGFMDTVHGSKPWR SQHTAFVRVSGHAFQALHGFVNKRTDGNVGEALASFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRTSDGSALLAESLAGTPQREPQSPASSQ AS A GTGVAT EA
Sbjct: 276 MVGVSAGMVMSTGHTGGGG-------VGAVGGGSGTSTGQHEAALKEERAKQHRSRRAEELRTIYQEDIHYFVQHGSSLLKKLHKTRPASQNSEQVLKLVQYVKEGHNALLYINRCHETGHVPSAASLQSLEHTLIRVHKASNALQVMIRDHSKTQYGGCGXXXXXXXXXXXXXXQQPSRQYSADQNAFSPGQSNSTLGPLGGTAGGVVTPVCSVGPTLTGSIDGGDSAALSLDAIPLPDTGTGYRTPQQXXXXXXNFLRQT---------------------------------------------------QQQVGTARRQRAHQLQLQXXXXXXXXXXXXXXXXXXXXXXXXXLQQQQLXXQQNXXXXXXXXXXXXXXXXXXXXXXXMPFRQXXXXXXXXXXXXXXX-----------------------ASASSGALPDARLLLAQGESSNDMFWGSVDIGDLEPTPLSGPLEDQVIPPNLEEGGDFDMPVEDFLDLDPFPLEGMPLDGDDWLSTQCLPEGSGNKPGGSPRAGNNSMDSSAVGGCGGASTRPGAYVPPPGALGDSGAGGLAVSSGLQQQQQQGLPQLQTQLSVGGLTPLGNGASGVAPINPADPIPEPLPQTVVDRLAAVVAGGGTAASNLGRLAGSVSAQLGFRAPGSTAAAADSSRSYLGGAAQDPDLLAAEASLGMGQSGRASGXXXXXXCGALTASGLRSAGQTLCRQANSAFEAMATAADVNKGNPALLHNVINHQLGPMPRLLNGLVSGCTVVVPAPSVAAVPPARSGSRGSGAAQDGTAXXXXXXXXXXXALSNKRTKDECGDGDDGRPEKKIALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMALLRAKVGRLFSLSAEYTHVRTGGMSGNGSSAALGG-EVGKKQEDGLTXXXXXXXXXXXXXXXT---AGDVKPDVGGGGLRRVLSRVKAVRAGHFVVHINFDVAGSNECRPCDVSVLSWNEAQEGESASAGGADARVKVE-----GGGFMDTVHGSKPWRASQHTAFVRVSGHAFQALHGFVNKRTDGNVGEALASFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRTSDGSALLAESLAGTPQREPQSPASSQTASTAAGTGVATVEA 1378
BLAST of mRNA_Ecto-sp9_F_contig117.1407.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX92_ECTSI) HSP 1 Score: 856 bits (2211), Expect = 2.050e-299 Identity = 561/626 (89.62%), Postives = 565/626 (90.26%), Query Frame = 1
Query: 1291 MQGESSNDMFWGSVDIGDLEPTPLSGSLEDQVIPPNLEEGGDFDMPVEDFLDLDPFPLEGMPLDGDDWLSTQSLPEGSGNKPGGSPRVGNVSMDSSAVGGSGGASTRPGAYVPPPGGLGXXXXXXXXXXXXXXXXXXQGLPQLQTQLSVGGLTPLGNGASGVAPINPADPIPEGNPALLQNVINHQLGPMPRLLNGLVSGCTVVVPAPSVAAVPPAGSGSRGSGAAQDGTXXXXXXXXXXXXXLSNKRTKDECGDGDDGRPEKKIALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMALLKAKVGRLFSLSAEYTHVRTGVVPENGSPAARGGGEVGKKQEAGLTNXXXXXXXXXXXXXXXXXXAGDVKSDVGGGGLRRVLASVKAVRAGHFVVHIKFDVAGSNKCRPCDVSVLSWNEAQEGEIASAGGADSRVKVEGGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHAFQALHGFVNKRTDGNVGEALASFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRTSDGSALLAESLAGTPQREPQSPASSQAASAAG--GTGVATAEA 3162
MQGESSNDMFWGSVDIGDLEPTPLSGSLEDQVIPPNLEEGGDFDMPVEDFLDLDPFPLEGMPL+GDDWLSTQSLPEGSGNKPGGSPR GNVSMDSSAVGGSGGASTRPGAYVPPPG LG QGLPQLQTQLSVGGLTPLGNGASGVAPINPADPIPEGNPALLQNVINHQLGPMPRLLNGLVSGCTVVVPAPSVAAVP XXXXXXXXXXXXX NKRTKDECGDGDDGRP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMA LKAKVGRLFSLSAEYTHVRTGVVPENGSPAA GGGEVGKKQEAGLTNXXXXXXXXXXXXXXXXXXAGDVKSDVGGGGLRRVLA VKAVRAGHFVVHIKFDVAGSN+CRPCDVSVLSWNEAQEGE AS GGAD+RVKVEGGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHAFQALHG+VNKRTDGNVGEAL SFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRT DGSALLAESLAGTPQREPQSPAS GTGVATAEA
Sbjct: 1 MQGESSNDMFWGSVDIGDLEPTPLSGSLEDQVIPPNLEEGGDFDMPVEDFLDLDPFPLEGMPLEGDDWLSTQSLPEGSGNKPGGSPRAGNVSMDSSAVGGSGGASTRPGAYVPPPGALGASGAGGLAVSSGLQQQQQQGLPQLQTQLSVGGLTPLGNGASGVAPINPADPIPEGNPALLQNVINHQLGPMPRLLNGLVSGCTVVVPAPSVAAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKRTKDECGDGDDGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMARLKAKVGRLFSLSAEYTHVRTGVVPENGSPAALGGGEVGKKQEAGLTNXXXXXXXXXXXXXXXXXXAGDVKSDVGGGGLRRVLARVKAVRAGHFVVHIKFDVAGSNECRPCDVSVLSWNEAQEGESASTGGADARVKVEGGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHAFQALHGYVNKRTDGNVGEALVSFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRTPDGSALLAESLAGTPQREPQSPASXXXXXXXXXXGTGVATAEA 626
BLAST of mRNA_Ecto-sp9_F_contig117.1407.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z449_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 6.480e-15 Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 172 AEELRNIYQEDIHYFVQHGSSLLKKLHKTRPASQ------NSEQVLKLVQYVKEGHNALLYINRCHDTGHVPSAASLQSLEHTLIRVHKASNALQVMI 447
AE+LR Y+ DI FVQ G S+L K H P S ++Q+ KL QYV+EG NAL+Y+ RCH GHVPSA SLQSLE TL +VH AS L+ M+
Sbjct: 447 AEQLRRRYEADIRAFVQQGRSVLLK-HDGSPRSMAAHGSGGADQIRKLRQYVREGQNALVYMERCHSRGHVPSAVSLQSLEQTLAKVHCASRTLRQMM 543
BLAST of mRNA_Ecto-sp9_F_contig117.1407.1 vs.
Match: KIX_2 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY1_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 6.160e-7 Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 283 QVLKLVQYVKEGHNALLYINRCHDTGHVPSAASLQSLEHTLIRVHKASNALQVM 444
+V KLVQY++EG NAL+Y+ RCH H+PS SL+SL TL +VHKAS AL+ M
Sbjct: 70 RVRKLVQYIREGQNALMYMERCHLQHHIPSGPSLESLHLTLQKVHKASLALRSM 123 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig117.1407.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig117.1407.1 >prot_Ecto-sp9_F_contig117.1407.1 ID=prot_Ecto-sp9_F_contig117.1407.1|Name=mRNA_Ecto-sp9_F_contig117.1407.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1055bp MVGVSAGMVMSTGHTGGAGGGGAGGGGAGGGGAGGTSTGQHEAALKEERAback to top mRNA from alignment at Ecto-sp9_F_contig117:56..5824- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig117.1407.1 ID=mRNA_Ecto-sp9_F_contig117.1407.1|Name=mRNA_Ecto-sp9_F_contig117.1407.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5769bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:56..5824- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig117:56..5824- >mRNA_Ecto-sp9_F_contig117.1407.1 ID=mRNA_Ecto-sp9_F_contig117.1407.1|Name=mRNA_Ecto-sp9_F_contig117.1407.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=6330bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:56..5824- (Ectocarpus species9 EcSCA_722f female)back to top |