mRNA_Ecto-sp9_F_contig11699.1406.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11699.1406.1
Unique NamemRNA_Ecto-sp9_F_contig11699.1406.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11699.1406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 2.880e-67
Identity = 135/151 (89.40%), Postives = 136/151 (90.07%), Query Frame = -3 
Query:   15 SDFVYYDGAPKSSLSREERTEARRNRTPAGPHPPPNARSPLVRRKLGGAAKRNMERKMXXXXXXXXXXXXXAVKVETGEAVGGEGDGSDTPGRLGGAEAAAGECGRGDNFGAESKDFESAASAAADRAVHSKAAEHFRSWTSNGDSEGAVA 467
            SDFVYYDGAPKSSLSREER  ARRNRTPAGPHPPPNARSPLVRRKLGGAAKRNMERKM     XXXXXXXX  K E GEAVGGEGDGSDTPG LGG EAAAG+ GRGDNFGAESKDFESAASAAADRAVHSKA EHFRSWTSNGDSEGAVA
Sbjct: 3062 SDFVYYDGAPKSSLSREERIVARRNRTPAGPHPPPNARSPLVRRKLGGAAKRNMERKMAATAAXXXXXXXXXAKAENGEAVGGEGDGSDTPGWLGGTEAAAGDGGRGDNFGAESKDFESAASAAADRAVHSKAEEHFRSWTSNGDSEGAVA 3212
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BLAST of mRNA_Ecto-sp9_F_contig11699.1406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.520e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = -3 
Query:   15 KDFESAASAAADRAVHSKAAEHFRSWTSNGDSEGAVA 125
            KDFESAASAAADRAVHSKAAEHFRSWTSNGDSEGAVA
Sbjct: 2886 KDFESAASAAADRAVHSKAAEHFRSWTSNGDSEGAVA 2922
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11699.1406.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.880e-6789.40protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.520e-11100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11699contigEcto-sp9_F_contig11699:3262..3730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928426.703451-CDS-Ecto-sp9_F_contig11699:3261..37141622928426.703451-CDS-Ecto-sp9_F_contig11699:3261..3714Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11699 3262..3714 +
1692277867.2032254-CDS-Ecto-sp9_F_contig11699:3261..37141692277867.2032254-CDS-Ecto-sp9_F_contig11699:3261..3714Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11699 3262..3714 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928426.7164679-UTR-Ecto-sp9_F_contig11699:3714..37301622928426.7164679-UTR-Ecto-sp9_F_contig11699:3714..3730Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11699 3715..3730 +
1692277867.220226-UTR-Ecto-sp9_F_contig11699:3714..37301692277867.220226-UTR-Ecto-sp9_F_contig11699:3714..3730Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11699 3715..3730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11699.1406.1prot_Ecto-sp9_F_contig11699.1406.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11699 3262..3714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11699.1406.1

>prot_Ecto-sp9_F_contig11699.1406.1 ID=prot_Ecto-sp9_F_contig11699.1406.1|Name=mRNA_Ecto-sp9_F_contig11699.1406.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=151bp
AAVAAATAPSLSPLEVQLRKCSAALLWTARSAAAEAADSKSFDSAPKLSP
RPHSPAAASAPPSRPGVSLPSPSPPTASPVSTFTAADDAAAAAAAVAAIF
LSIFLLAAPPSFLRTRGDLALGGGCGPAGVRLRRASVLSSLESELLGAPS
*
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mRNA from alignment at Ecto-sp9_F_contig11699:3262..3730+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11699.1406.1 ID=mRNA_Ecto-sp9_F_contig11699.1406.1|Name=mRNA_Ecto-sp9_F_contig11699.1406.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=469bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11699:3262..3730+ (Ectocarpus species9 EcSCA_722f female)
GCCGCCGTCGCCGCCGCCACGGCGCCCTCGCTGTCTCCGTTGGAGGTCCA
GCTCCGGAAGTGCTCCGCCGCCTTGCTGTGGACCGCGCGGTCCGCCGCCG
CCGAAGCTGCGGATTCGAAATCCTTTGATTCGGCTCCAAAATTGTCTCCG
CGGCCACACTCACCAGCCGCCGCCTCTGCCCCCCCAAGCCGGCCAGGCGT
ATCGCTGCCATCACCTTCGCCACCCACAGCTTCGCCAGTCTCCACTTTCA
CCGCTGCTGATGACGCCGCCGCTGCCGCCGCCGCCGTGGCTGCCATTTTT
CTCTCCATATTCCTCTTGGCAGCCCCGCCAAGCTTTCTGCGGACGAGGGG
CGACCTAGCGTTGGGCGGCGGATGCGGTCCGGCCGGGGTGCGATTGCGGC
GCGCCTCGGTTCTCTCTTCTCTCGAAAGCGAGCTCTTGGGGGCTCCGTCG
TAGTACACGAAGTCAGACT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11699:3262..3730+

>mRNA_Ecto-sp9_F_contig11699.1406.1 ID=mRNA_Ecto-sp9_F_contig11699.1406.1|Name=mRNA_Ecto-sp9_F_contig11699.1406.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11699:3262..3730+ (Ectocarpus species9 EcSCA_722f female)
GCCGCCGTCGCCGCCGCCACGGCGCCCTCGCTGTCTCCGTTGGAGGTCCA
GCTCCGGAAGTGCTCCGCCGCCTTGCTGTGGACCGCGCGGTCCGCCGCCG
CCGAAGCTGCGGATTCGAAATCCTTTGATTCGGCTCCAAAATTGTCTCCG
CGGCCACACTCACCAGCCGCCGCCTCTGCCCCCCCAAGCCGGCCAGGCGT
ATCGCTGCCATCACCTTCGCCACCCACAGCTTCGCCAGTCTCCACTTTCA
CCGCTGCTGATGACGCCGCCGCTGCCGCCGCCGCCGTGGCTGCCATTTTT
CTCTCCATATTCCTCTTGGCAGCCCCGCCAAGCTTTCTGCGGACGAGGGG
CGACCTAGCGTTGGGCGGCGGATGCGGTCCGGCCGGGGTGCGATTGCGGC
GCGCCTCGGTTCTCTCTTCTCTCGAAAGCGAGCTCTTGGGGGCTCCGTCG
TAGGCCGCCGTCGCCGCCGCCACGGCGCCCTCGCTGTCTCCGTTGGAGGT
CCAGCTCCGGAAGTGCTCCGCCGCCTTGCTGTGGACCGCGCGGTCCGCCG
CCGCCGAAGCTGCGGATTCGAAATCCTTTGATTCGGCTCCAAAATTGTCT
CCGCGGCCACACTCACCAGCCGCCGCCTCTGCCCCCCCAAGCCGGCCAGG
CGTATCGCTGCCATCACCTTCGCCACCCACAGCTTCGCCAGTCTCCACTT
TCACCGCTGCTGATGACGCCGCCGCTGCCGCCGCCGCCGTGGCTGCCATT
TTTCTCTCCATATTCCTCTTGGCAGCCCCGCCAAGCTTTCTGCGGACGAG
GGGCGACCTAGCGTTGGGCGGCGGATGCGGTCCGGCCGGGGTGCGATTGC
GGCGCGCCTCGGTTCTCTCTTCTCTCGAAAGCGAGCTCTTGGGGGCTCCG
TCGTAG
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