mRNA_Ecto-sp9_F_contig11691.1404.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11691.1404.1
Unique NamemRNA_Ecto-sp9_F_contig11691.1404.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11691.1404.1 vs.
Match: ST (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL02_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.140e-43
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 2 
Query:    2 VQDRVDANTALDKMLYDAAVRHYNQMKAVAAIEIEDDLKKFEELQKMVNGYLALNSSSEAIRWYSGSAQPYLGGEQFHPF 241
            VQDRVDANTALDKMLYDAAVRHYNQMKAVAAIEIEDDLK+FEELQK+VNGYLALNSSSEAIRWYSGSAQPYLGGEQFHPF
Sbjct:  452 VQDRVDANTALDKMLYDAAVRHYNQMKAVAAIEIEDDLKQFEELQKVVNGYLALNSSSEAIRWYSGSAQPYLGGEQFHPF 531
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BLAST of mRNA_Ecto-sp9_F_contig11691.1404.1 vs.
Match: Sulfotransferase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI84_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.470e-42
Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 2 
Query:    2 VQDRVDANTALDKMLYDAAVRHYNQMKAVAAIEIEDDLKKFEELQKMVNGYLALNSSSEAIRWYSGSAQPYLGGEQFHPF 241
            VQDRVDANTALDKMLYDAAV HYN+MKAVAA+EIEDDLK+F+ELQK VNGYLALNSSSEAIRWYSGSAQPYLGGEQFHPF
Sbjct:  263 VQDRVDANTALDKMLYDAAVSHYNKMKAVAAMEIEDDLKEFDELQKTVNGYLALNSSSEAIRWYSGSAQPYLGGEQFHPF 342
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BLAST of mRNA_Ecto-sp9_F_contig11691.1404.1 vs.
Match: Sulfotransferase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 7.280e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:    2 VQDRVDANTALDKMLYDAAVRHYNQMKAVAAIEIEDDLKKFEELQKMVNGYLALNSSSEAIRWYSGSAQPYLGGEQFHPF 241
            VQD +DA TALD+ L++AAV  Y Q   V   + E DL +F+ELQ++V  YL  NSSSEA RWY+ +A+PY GG   + F
Sbjct:  235 VQDTIDATTALDRKLHEAAVLAYRQAAEVG--DAEQDLVEFKELQRIVTAYLQANSSSEARRWYAPNAEPYNGGPPLYAF 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11691.1404.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
ST1.140e-4397.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Sulfotransferase1.470e-4292.50n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Sulfotransferase7.280e-1551.25n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11691contigEcto-sp9_F_contig11691:1860..3601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue7.3e-08
Seed eggNOG ortholog2880.D7G4H5
Preferred nameGAL3ST3
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
EggNOG free text desc.galactosylceramide sulfotransferase activity
EggNOG OGs2CM97@1,2QPNT@2759
EC2.8.2.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons3
Model size495
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11691.1404.1prot_Ecto-sp9_F_contig11691.1404.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11691 2111..3561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928426.5378761-UTR-Ecto-sp9_F_contig11691:1859..21101622928426.5378761-UTR-Ecto-sp9_F_contig11691:1859..2110Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11691 1860..2110 -
1692277867.116382-UTR-Ecto-sp9_F_contig11691:1859..21101692277867.116382-UTR-Ecto-sp9_F_contig11691:1859..2110Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11691 1860..2110 -
1622928426.597515-UTR-Ecto-sp9_F_contig11691:3561..36011622928426.597515-UTR-Ecto-sp9_F_contig11691:3561..3601Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11691 3562..3601 -
1692277867.1645703-UTR-Ecto-sp9_F_contig11691:3561..36011692277867.1645703-UTR-Ecto-sp9_F_contig11691:3561..3601Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11691 3562..3601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928426.5580983-CDS-Ecto-sp9_F_contig11691:2110..21651622928426.5580983-CDS-Ecto-sp9_F_contig11691:2110..2165Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11691 2111..2165 -
1692277867.1339657-CDS-Ecto-sp9_F_contig11691:2110..21651692277867.1339657-CDS-Ecto-sp9_F_contig11691:2110..2165Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11691 2111..2165 -
1622928426.5715444-CDS-Ecto-sp9_F_contig11691:3141..32541622928426.5715444-CDS-Ecto-sp9_F_contig11691:3141..3254Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11691 3142..3254 -
1692277867.1453483-CDS-Ecto-sp9_F_contig11691:3141..32541692277867.1453483-CDS-Ecto-sp9_F_contig11691:3141..3254Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11691 3142..3254 -
1622928426.5863252-CDS-Ecto-sp9_F_contig11691:3525..35611622928426.5863252-CDS-Ecto-sp9_F_contig11691:3525..3561Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11691 3526..3561 -
1692277867.1548896-CDS-Ecto-sp9_F_contig11691:3525..35611692277867.1548896-CDS-Ecto-sp9_F_contig11691:3525..3561Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11691 3526..3561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11691.1404.1

>prot_Ecto-sp9_F_contig11691.1404.1 ID=prot_Ecto-sp9_F_contig11691.1404.1|Name=mRNA_Ecto-sp9_F_contig11691.1404.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=68bp
MLYDAAVRHYNQMKAVAAIEIEDDLKKFEELQKMVNGYLALNSSSEAIRW
YSGSAQPYLGGEQFHPF*
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mRNA from alignment at Ecto-sp9_F_contig11691:1860..3601-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11691.1404.1 ID=mRNA_Ecto-sp9_F_contig11691.1404.1|Name=mRNA_Ecto-sp9_F_contig11691.1404.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1742bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11691:1860..3601- (Ectocarpus species9 EcSCA_722f female)
GGTTCAAGACAGGGTTGACGCCAACACCGCTCTGGACAAGATGCTGTACG
ACGCGGCCGTTAGGCATTATAACCAGGTGACGACGGGTTGGGGGTTGCAT
GGAGTTTCATTGGAATACCCGCCGCCCCCCCTGTGTTCACAGGCTCCATC
CTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTAAAAGGCATGCAAAAC
AGTAAGAGTACCCCCCCTTCCCTCTGTTCACTACTGCTTAACCGTGGAGC
ATTTCGTTAATTTTACATGTAGATGTATAACGTGGGCAGGCCGCGAGACT
CCCGCCAACCTCCCCCCGCGGCGTTCTTTTTGCTTGTTGCACCGCAGATG
AAGGCCGTTGCGGCCATCGAGATCGAAGACGACCTCAAGAAGTTCGAGGA
GCTGCAGAAGATGGTCAACGGGTACCTAGCGCTAAACTCGTCGAGCGAGG
CGATTCGCTGGTGAGCAAAGGGCGGCGGTTTTGGGGGTGCTCGCGTAAAC
ACATGATGCCGTAGTCGTTGAACGATTGACCTCGAATCTGTACAATATCG
GGACCAGGCGATATGCCGGGGTTTTGCCGGCCCACGCTTGTACGTTTCAC
GAGGATGGACCTGGGAGGGCAAGCTTTTCATGGGGTCACTGCTGTTGTTA
TCGATCGGGTTTGATTTTCCTGTATGGTTTTGGGTACCACCCTCGAAAAA
CATGTCACACGGTCCGCAACTCGTGCCCAGTGTGAGGATGTGTTTGCCGC
TGCGGTTCGGAGATAGCTGTCTGGATGGTGACAGTTTTCTTTAAACCCAT
TTTCGCGCGGGAGGGAAGTAGAGGGAATCTGAAAACCCTACAGAAGTACA
CGCATCCCCGTAAGTTGCGTAAGATATCATACCCCCTGGACCGATTTTCA
AAGCTCCATTACTCGGCAGCAGGAAAAGCACCAACGGTGCCGAAAATGGC
CGCGTCGGAACCGCCTAGTTGAGAGCTTTACACAAGCGAATTGTTTGATT
TCGGCATGCTCTTCGTCGTGGAGCAATCAGGCCTTTTCAAAATCGGTCAA
GGGGATGTGGTATCTTACGTCATGCAACCTAACGGTGTCCCCGTAGTCTT
GGTTGGGAAGAACACGCCCTCCGGAAATAAGAAAAAAAGTGCGTGTGTTT
TTTGTCGCTCGTGGCTTCTGGTTGTTTCCTCAAAACGGTCTGTCTCGAAG
TGCCCCGTGACCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCTTCCTCCCCCCNNNNNNNNNNAGGGGGGTTGT
TTTTTTTGGGGCGGGGTTTTTTGTTTTTTTTCCAAAACGGCTTTGCCGGA
GGGGCCCCTGGCCCCCCCCCCCCCCCCCCCCTCTTTTCCACCCACCGGTG
CCCCCTCCCGCCCCCCGTCTCCGGCTGCCGCCGCAGGTACTCAGGGAGCG
CGCAGCCTTACCTGGGAGGAGAACAATTTCACCCGTTCTGATTATCTTGA
TTCCGTCGTTCAATAACCGACAACATCGTTTTGCTTTGTCAAGATGGTGA
ATGGTTATTCTGGGTCACACGCCGCAAGCAGCTTGGGGGCGGTGCCACCG
AAGCTGGGGGGGGGCGGTGGAGGCTGCGGCGGTTTCGAGCAATGGAGCGC
CACGCGATCAGTCCATGGCGACCAGGCGTTGTGTTGTTTGTTTCGCGCTC
CGCTCTACCGTTTGTTGGCGTCCTCATCAATCGAGGTGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11691:1860..3601-

>mRNA_Ecto-sp9_F_contig11691.1404.1 ID=mRNA_Ecto-sp9_F_contig11691.1404.1|Name=mRNA_Ecto-sp9_F_contig11691.1404.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11691:1860..3601- (Ectocarpus species9 EcSCA_722f female)
ATGCTGTACGACGCGGCCGTTAGGCATTATAACCAGATGCTGTACGACGC
GGCCGTTAGGCATTATAACCAGATGAAGGCCGTTGCGGCCATCGAGATCG
AAGACGACCTCAAGAAGTTCGAGGAGCTGCAGAAGATGGTCAACGGGTAC
CTAGCGCTAAACTCGTCGAGCGAGGCGATTCGCTGATGAAGGCCGTTGCG
GCCATCGAGATCGAAGACGACCTCAAGAAGTTCGAGGAGCTGCAGAAGAT
GGTCAACGGGTACCTAGCGCTAAACTCGTCGAGCGAGGCGATTCGCTGGT
ACTCAGGGAGCGCGCAGCCTTACCTGGGAGGAGAACAATTTCACCCGTTC
TGAGTACTCAGGGAGCGCGCAGCCTTACCTGGGAGGAGAACAATTTCACC
CGTTCTGA
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