mRNA_Ecto-sp9_F_contig1168.1392.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1168.1392.1
Unique NamemRNA_Ecto-sp9_F_contig1168.1392.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: RNA (pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 2.410e-48
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = -1
Query:    1 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGAAGDGXXXXXXXXXXXXXXXXNGMRRKLEAGGMKVSEVSSPGGGNSSTVGGRRDTGDRASSSG 360
            NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPG A   XXXXXXXXXXXXXXXXNGMRR++EAGGMKVSEVSSPG G S+TVGG RDTGDRA SSG
Sbjct:  324 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXXXXXXXXXXXXXXXXXXXNGMRREMEAGGMKVSEVSSPGTGLSNTVGGGRDTGDRAGSSG 443          
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.160e-45
Identity = 91/115 (79.13%), Postives = 93/115 (80.87%), Query Frame = -1
Query:    1 KICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGAAGDGXXXXXXXXXXXXXXXXNGMRRKLEAGGMKVSEVSSPGGGNSSTVGGRRDTGDRASSSG 345
            KICKYLCLTVNRLART YGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPG A    XXX            NGMRR+LEAG M+VSEVSSPGGGNSSTVGG RDT DRA SSG
Sbjct:   42 KICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXX--XXXGTSGRRLGPGPGNGMRRELEAGRMRVSEVSSPGGGNSSTVGGGRDTDDRAISSG 154          
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.260e-8
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  214 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRL 360
            N QIR++C++L LTVNRL RT +GPF LGK+ +GGVA V + + F++++
Sbjct:  241 NNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQV 289          
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E6X8W3_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 1.480e-6
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = -1
Query:  220 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMR 360
            NR++RK+  +L LTVNRL RT YGPF LGK+R GG+   EI    MR
Sbjct:  147 NREVRKVLAHLGLTVNRLIRTTYGPFQLGKIRRGGIE--EIKNKVMR 191          
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6B1HIP4_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 2.640e-6
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = -1
Query:  217 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRR 360
            NR+IRK+C +L LT NRL RT YGPF LGK+ AG V    IP+  +R+
Sbjct:  201 NREIRKLCAHLGLTANRLIRTAYGPFQLGKLAAGAVE--RIPERVLRQ 246          
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7X4D014_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 3.590e-6
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = -1
Query:  217 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRR 360
            NR+IRK+C +L LT NRL RT YGPF LGK+ AG V    +P+  +R+
Sbjct:  200 NREIRKLCAHLGLTANRLIRTAYGPFQLGKLAAGAVE--RVPERVLRQ 245          
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E8AI73_9HYPH)

HSP 1 Score: 53.5 bits (127), Expect = 5.700e-6
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = -1
Query:  217 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRR 360
            NR+IRKIC Y+ L VNRL R  YGPFSLG +   GV   EI K F++R
Sbjct:  194 NREIRKICNYMNLEVNRLIRYSYGPFSLGNLAKCGVK--EISKIFLKR 239          
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SFA6_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.520e-5
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = -1
Query:  214 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRL 360
            NR+IR+IC++L L VNRL RT YGPF LG+++ G +A V  P+    +L
Sbjct:  190 NREIRRICEHLGLKVNRLIRTAYGPFQLGRLKRGALAEVS-PRQLREQL 237          
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: rRNA (pseudouridine synthase n=1 Tax=Sphingomonadaceae bacterium LXI357 TaxID=2826939 RepID=UPI001B819D27)

HSP 1 Score: 50.4 bits (119), Expect = 8.670e-5
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = -1
Query:  244 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAV 360
            NR++R++ +YL L VNRL RTRYGPF LG + +GG+  V
Sbjct:  239 NREVRRVLEYLGLEVNRLIRTRYGPFELGDLPSGGIGEV 277          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
RNA2.410e-4890.83pseudouridylate synthase domain-containing protein... [more]
Uncharacterized1.160e-4579.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Pseudouridine2.260e-853.06synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
Pseudouridine1.480e-657.45synthase n=1 Tax=Magnetovibrio sp. TaxID=2024836 R... [more]
Pseudouridine2.640e-656.25synthase n=1 Tax=Rhodospirillaceae bacterium TaxID... [more]
Pseudouridine3.590e-654.17synthase n=2 Tax=Rhodospirillaceae bacterium TaxID... [more]
Pseudouridine5.700e-658.33synthase n=1 Tax=Rhodobiaceae bacterium TaxID=2026... [more]
Pseudouridine1.520e-551.02synthase n=1 Tax=Thermopetrobacter sp. TaxID=22681... [more]
rRNA8.670e-556.41pseudouridine synthase n=1 Tax=Sphingomonadaceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1168contigEcto-sp9_F_contig1168:25556..25915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928424.9483957-CDS-Ecto-sp9_F_contig1168:25555..259151622928424.9483957-CDS-Ecto-sp9_F_contig1168:25555..25915Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1168 25556..25915 +
1692277866.4382088-CDS-Ecto-sp9_F_contig1168:25555..259151692277866.4382088-CDS-Ecto-sp9_F_contig1168:25555..25915Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1168 25556..25915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1168.1392.1prot_Ecto-sp9_F_contig1168.1392.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1168 25556..25915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1168.1392.1

>prot_Ecto-sp9_F_contig1168.1392.1 ID=prot_Ecto-sp9_F_contig1168.1392.1|Name=mRNA_Ecto-sp9_F_contig1168.1392.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=120bp
SRATSAIAGVPSPAYSAAVPAPRRRHLRYLHPPSLQFPPHPVPRSRAHSS
PAATTAAATVPCRARRATAVLETAHERLRDFHGGNPAGPYLSQAEGAVAG
PGQPVYGQAQVLADLADLPV
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mRNA from alignment at Ecto-sp9_F_contig1168:25556..25915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1168.1392.1 ID=mRNA_Ecto-sp9_F_contig1168.1392.1|Name=mRNA_Ecto-sp9_F_contig1168.1392.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1168:25556..25915+ (Ectocarpus species9 EcSCA_722f female)
TCCAGAGCTACTAGCGCGATCGCCGGTGTCCCTTCTCCCGCCTACAGTGC TGCTGTTCCCGCCCCCCGGCGACGACACCTCCGATACCTTCATCCCCCCA GCCTCCAATTTCCGCCGCATCCCGTTCCCAGGTCCCGGGCCCACTCTTCT CCTGCTGCTACCACTGCCGCTGCCACCGTCCCCTGCCGCGCCCGGCGAGC CACCGCCGTCCTCGAGACGGCGCATGAACGCCTTCGGGATTTCCACGGCG GCAACCCCGCCGGCCCGTACCTTTCCCAGGCTGAAGGGGCCGTAGCGGGT CCTGGCCAGCCGGTTTACGGTCAGGCACAGGTACTTGCAGATCTTGCGGA TTTGCCGGTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1168:25556..25915+

>mRNA_Ecto-sp9_F_contig1168.1392.1 ID=mRNA_Ecto-sp9_F_contig1168.1392.1|Name=mRNA_Ecto-sp9_F_contig1168.1392.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1168:25556..25915+ (Ectocarpus species9 EcSCA_722f female)
TCCAGAGCTACTAGCGCGATCGCCGGTGTCCCTTCTCCCGCCTACAGTGC
TGCTGTTCCCGCCCCCCGGCGACGACACCTCCGATACCTTCATCCCCCCA
GCCTCCAATTTCCGCCGCATCCCGTTCCCAGGTCCCGGGCCCACTCTTCT
CCTGCTGCTACCACTGCCGCTGCCACCGTCCCCTGCCGCGCCCGGCGAGC
CACCGCCGTCCTCGAGACGGCGCATGAACGCCTTCGGGATTTCCACGGCG
GCAACCCCGCCGGCCCGTACCTTTCCCAGGCTGAAGGGGCCGTAGCGGGT
CCTGGCCAGCCGGTTTACGGTCAGGCACAGGTACTTGCAGATCTTGCGGA
TTTGCCGGTTTCCAGAGCTACTAGCGCGATCGCCGGTGTCCCTTCTCCCG
CCTACAGTGCTGCTGTTCCCGCCCCCCGGCGACGACACCTCCGATACCTT
CATCCCCCCAGCCTCCAATTTCCGCCGCATCCCGTTCCCAGGTCCCGGGC
CCACTCTTCTCCTGCTGCTACCACTGCCGCTGCCACCGTCCCCTGCCGCG
CCCGGCGAGCCACCGCCGTCCTCGAGACGGCGCATGAACGCCTTCGGGAT
TTCCACGGCGGCAACCCCGCCGGCCCGTACCTTTCCCAGGCTGAAGGGGC
CGTAGCGGGTCCTGGCCAGCCGGTTTACGGTCAGGCACAGGTACTTGCAG
ATCTTGCGGATTTGCCGGTT
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