mRNA_Ecto-sp9_F_contig1168.1392.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: RNA (pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI) HSP 1 Score: 170 bits (430), Expect = 2.410e-48 Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = -1
Query: 1 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGAAGDGXXXXXXXXXXXXXXXXNGMRRKLEAGGMKVSEVSSPGGGNSSTVGGRRDTGDRASSSG 360
NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPG A XXXXXXXXXXXXXXXXNGMRR++EAGGMKVSEVSSPG G S+TVGG RDTGDRA SSG
Sbjct: 324 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXXXXXXXXXXXXXXXXXXXNGMRREMEAGGMKVSEVSSPGTGLSNTVGGGRDTGDRAGSSG 443
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.160e-45 Identity = 91/115 (79.13%), Postives = 93/115 (80.87%), Query Frame = -1
Query: 1 KICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGAAGDGXXXXXXXXXXXXXXXXNGMRRKLEAGGMKVSEVSSPGGGNSSTVGGRRDTGDRASSSG 345
KICKYLCLTVNRLART YGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPG A XXX NGMRR+LEAG M+VSEVSSPGGGNSSTVGG RDT DRA SSG
Sbjct: 42 KICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXX--XXXGTSGRRLGPGPGNGMRRELEAGRMRVSEVSSPGGGNSSTVGGGRDTDDRAISSG 154
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.260e-8 Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = -1
Query: 214 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRL 360
N QIR++C++L LTVNRL RT +GPF LGK+ +GGVA V + + F++++
Sbjct: 241 NNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQV 289
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E6X8W3_9PROT) HSP 1 Score: 54.7 bits (130), Expect = 1.480e-6 Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = -1
Query: 220 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMR 360
NR++RK+ +L LTVNRL RT YGPF LGK+R GG+ EI MR
Sbjct: 147 NREVRKVLAHLGLTVNRLIRTTYGPFQLGKIRRGGIE--EIKNKVMR 191
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6B1HIP4_9PROT) HSP 1 Score: 54.7 bits (130), Expect = 2.640e-6 Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = -1
Query: 217 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRR 360
NR+IRK+C +L LT NRL RT YGPF LGK+ AG V IP+ +R+
Sbjct: 201 NREIRKLCAHLGLTANRLIRTAYGPFQLGKLAAGAVE--RIPERVLRQ 246
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7X4D014_9PROT) HSP 1 Score: 54.3 bits (129), Expect = 3.590e-6 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = -1
Query: 217 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRR 360
NR+IRK+C +L LT NRL RT YGPF LGK+ AG V +P+ +R+
Sbjct: 200 NREIRKLCAHLGLTANRLIRTAYGPFQLGKLAAGAVE--RVPERVLRQ 245
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E8AI73_9HYPH) HSP 1 Score: 53.5 bits (127), Expect = 5.700e-6 Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = -1
Query: 217 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRR 360
NR+IRKIC Y+ L VNRL R YGPFSLG + GV EI K F++R
Sbjct: 194 NREIRKICNYMNLEVNRLIRYSYGPFSLGNLAKCGVK--EISKIFLKR 239
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SFA6_9PROT) HSP 1 Score: 52.4 bits (124), Expect = 1.520e-5 Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = -1
Query: 214 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRL 360
NR+IR+IC++L L VNRL RT YGPF LG+++ G +A V P+ +L
Sbjct: 190 NREIRRICEHLGLKVNRLIRTAYGPFQLGRLKRGALAEVS-PRQLREQL 237
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Match: rRNA (pseudouridine synthase n=1 Tax=Sphingomonadaceae bacterium LXI357 TaxID=2826939 RepID=UPI001B819D27) HSP 1 Score: 50.4 bits (119), Expect = 8.670e-5 Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = -1
Query: 244 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAV 360
NR++R++ +YL L VNRL RTRYGPF LG + +GG+ V
Sbjct: 239 NREVRRVLEYLGLEVNRLIRTRYGPFELGDLPSGGIGEV 277 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1168.1392.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1168.1392.1 >prot_Ecto-sp9_F_contig1168.1392.1 ID=prot_Ecto-sp9_F_contig1168.1392.1|Name=mRNA_Ecto-sp9_F_contig1168.1392.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=120bp SRATSAIAGVPSPAYSAAVPAPRRRHLRYLHPPSLQFPPHPVPRSRAHSSback to top mRNA from alignment at Ecto-sp9_F_contig1168:25556..25915+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1168.1392.1 ID=mRNA_Ecto-sp9_F_contig1168.1392.1|Name=mRNA_Ecto-sp9_F_contig1168.1392.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1168:25556..25915+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1168:25556..25915+ >mRNA_Ecto-sp9_F_contig1168.1392.1 ID=mRNA_Ecto-sp9_F_contig1168.1392.1|Name=mRNA_Ecto-sp9_F_contig1168.1392.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1168:25556..25915+ (Ectocarpus species9 EcSCA_722f female)back to top |