mRNA_Ecto-sp9_F_contig11670.1385.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11670.1385.1
Unique NamemRNA_Ecto-sp9_F_contig11670.1385.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11670.1385.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11670contigEcto-sp9_F_contig11670:1642..2324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928424.7230873-CDS-Ecto-sp9_F_contig11670:1642..18851622928424.7230873-CDS-Ecto-sp9_F_contig11670:1642..1885Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11670 1643..1885 -
1692277866.3437662-CDS-Ecto-sp9_F_contig11670:1642..18851692277866.3437662-CDS-Ecto-sp9_F_contig11670:1642..1885Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11670 1643..1885 -
1622928424.7355323-CDS-Ecto-sp9_F_contig11670:2279..23241622928424.7355323-CDS-Ecto-sp9_F_contig11670:2279..2324Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11670 2280..2324 -
1692277866.3522136-CDS-Ecto-sp9_F_contig11670:2279..23241692277866.3522136-CDS-Ecto-sp9_F_contig11670:2279..2324Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11670 2280..2324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11670.1385.1prot_Ecto-sp9_F_contig11670.1385.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11670 1643..2324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11670.1385.1

>prot_Ecto-sp9_F_contig11670.1385.1 ID=prot_Ecto-sp9_F_contig11670.1385.1|Name=mRNA_Ecto-sp9_F_contig11670.1385.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp
SFVERPSITNGHTMKDIHPNQQPPPQVIVGELQVTLDRAEVGKERRAPSS
HSSTVPPNESRARRAVSGEGERSTDRMFARMTTVFPDVCGGGHQEA
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mRNA from alignment at Ecto-sp9_F_contig11670:1642..2324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11670.1385.1 ID=mRNA_Ecto-sp9_F_contig11670.1385.1|Name=mRNA_Ecto-sp9_F_contig11670.1385.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=683bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11670:1642..2324- (Ectocarpus species9 EcSCA_722f female)
TCATTCGTTGAGCGCCCTTCCATAACAAACGGCCACACCATGAAAGTAAG
TGAGAGACTTTTTTCTGGAAGCAGAAGGTTGGGGGTGGGTTTCGTTGGTT
CGGCACACACATACTCCGCAATTTTTTTATATTATGCGTACATGTGCATA
GCGCGCGGGATGAAAATTCTCCGAGGCTTCACTTCTACAAGGAGACATAC
ATAAAGACTAGCGGTGCGTTCATTGTGCGCCTTTGCGCCCAGAATCATCT
GTGGCAGATTTTGGGAGGTGGAATATGTATGTATGTGTGACCAGCGAAGC
CAGCCCCGAAGTGTGCCGTTCACGCCCTCGCACGGGGACTGCTGTTTGTG
GTATTTTTCGCCTTGCTTCTTTCCTCCACCCTTGCTGTGAAATAAATACG
CACGTACGTTCGTTGCGATCGGGCTACTCATTCCGGCAGGACATACATCC
CAACCAACAACCTCCTCCGCAAGTAATTGTGGGCGAACTTCAAGTGACAC
TCGACAGAGCCGAGGTGGGGAAAGAAAGGCGTGCTCCCTCGTCACATTCA
TCTACAGTACCTCCAAACGAAAGTCGAGCGAGGCGGGCCGTCTCGGGTGA
GGGAGAAAGAAGCACAGACAGGATGTTTGCTCGTATGACGACGGTCTTTC
CTGACGTGTGTGGCGGGGGGCACCAAGAGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11670:1642..2324-

>mRNA_Ecto-sp9_F_contig11670.1385.1 ID=mRNA_Ecto-sp9_F_contig11670.1385.1|Name=mRNA_Ecto-sp9_F_contig11670.1385.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11670:1642..2324- (Ectocarpus species9 EcSCA_722f female)
TCATTCGTTGAGCGCCCTTCCATAACAAACGGCCACACCATGAAATCATT
CGTTGAGCGCCCTTCCATAACAAACGGCCACACCATGAAAGACATACATC
CCAACCAACAACCTCCTCCGCAAGTAATTGTGGGCGAACTTCAAGTGACA
CTCGACAGAGCCGAGGTGGGGAAAGAAAGGCGTGCTCCCTCGTCACATTC
ATCTACAGTACCTCCAAACGAAAGTCGAGCGAGGCGGGCCGTCTCGGGTG
AGGGAGAAAGAAGCACAGACAGGATGTTTGCTCGTATGACGACGGTCTTT
CCTGACGTGTGTGGCGGGGGGCACCAAGAGGCAGACATACATCCCAACCA
ACAACCTCCTCCGCAAGTAATTGTGGGCGAACTTCAAGTGACACTCGACA
GAGCCGAGGTGGGGAAAGAAAGGCGTGCTCCCTCGTCACATTCATCTACA
GTACCTCCAAACGAAAGTCGAGCGAGGCGGGCCGTCTCGGGTGAGGGAGA
AAGAAGCACAGACAGGATGTTTGCTCGTATGACGACGGTCTTTCCTGACG
TGTGTGGCGGGGGGCACCAAGAGGCA
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