mRNA_Ecto-sp9_F_contig11656.1379.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11656.1379.1
Unique NamemRNA_Ecto-sp9_F_contig11656.1379.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11656.1379.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11656contigEcto-sp9_F_contig11656:2205..2524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928423.2647774-CDS-Ecto-sp9_F_contig11656:2204..25221622928423.2647774-CDS-Ecto-sp9_F_contig11656:2204..2522Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11656 2205..2522 +
1692277865.7345355-CDS-Ecto-sp9_F_contig11656:2204..25221692277865.7345355-CDS-Ecto-sp9_F_contig11656:2204..2522Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11656 2205..2522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11656.1379.1prot_Ecto-sp9_F_contig11656.1379.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11656 2205..2522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11656.1379.1

>prot_Ecto-sp9_F_contig11656.1379.1 ID=prot_Ecto-sp9_F_contig11656.1379.1|Name=mRNA_Ecto-sp9_F_contig11656.1379.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
LGLAGAVCFFSQHDTTNPSLSKIESVRLATNFICVLVALAETTCISRVSR
GQVFLLIPLVSLFRKGGRIDVEDKFDDEKKCRGCWLTPKNNTVERASAKT
TRFLRA
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mRNA from alignment at Ecto-sp9_F_contig11656:2205..2524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11656.1379.1 ID=mRNA_Ecto-sp9_F_contig11656.1379.1|Name=mRNA_Ecto-sp9_F_contig11656.1379.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=320bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11656:2205..2524+ (Ectocarpus species9 EcSCA_722f female)
CTAGGTTTGGCCGGGGCTGTTTGTTTTTTTTCGCAACATGACACAACCAA
TCCATCTCTTTCCAAAATAGAGTCTGTACGATTAGCAACGAATTTCATTT
GCGTACTTGTAGCGTTGGCGGAAACTACCTGTATTTCTAGGGTGTCCCGA
GGGCAAGTTTTCTTGTTGATACCTCTTGTAAGCTTGTTCCGAAAAGGTGG
AAGGATCGACGTCGAGGATAAATTTGATGACGAAAAAAAATGTAGAGGAT
GTTGGCTTACCCCAAAAAACAACACTGTGGAACGAGCTTCGGCCAAAACA
ACAAGGTTCTTAAGGGCGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11656:2205..2524+

>mRNA_Ecto-sp9_F_contig11656.1379.1 ID=mRNA_Ecto-sp9_F_contig11656.1379.1|Name=mRNA_Ecto-sp9_F_contig11656.1379.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11656:2205..2524+ (Ectocarpus species9 EcSCA_722f female)
CTAGGTTTGGCCGGGGCTGTTTGTTTTTTTTCGCAACATGACACAACCAA
TCCATCTCTTTCCAAAATAGAGTCTGTACGATTAGCAACGAATTTCATTT
GCGTACTTGTAGCGTTGGCGGAAACTACCTGTATTTCTAGGGTGTCCCGA
GGGCAAGTTTTCTTGTTGATACCTCTTGTAAGCTTGTTCCGAAAAGGTGG
AAGGATCGACGTCGAGGATAAATTTGATGACGAAAAAAAATGTAGAGGAT
GTTGGCTTACCCCAAAAAACAACACTGTGGAACGAGCTTCGGCCAAAACA
ACAAGGTTCTTAAGGGCGCTAGGTTTGGCCGGGGCTGTTTGTTTTTTTTC
GCAACATGACACAACCAATCCATCTCTTTCCAAAATAGAGTCTGTACGAT
TAGCAACGAATTTCATTTGCGTACTTGTAGCGTTGGCGGAAACTACCTGT
ATTTCTAGGGTGTCCCGAGGGCAAGTTTTCTTGTTGATACCTCTTGTAAG
CTTGTTCCGAAAAGGTGGAAGGATCGACGTCGAGGATAAATTTGATGACG
AAAAAAAATGTAGAGGATGTTGGCTTACCCCAAAAAACAACACTGTGGAA
CGAGCTTCGGCCAAAACAACAAGGTTCTTAAGGGCG
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