mRNA_Ecto-sp9_F_contig1165.1377.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1165.1377.1
Unique NamemRNA_Ecto-sp9_F_contig1165.1377.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1165.1377.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG4_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 4.690e-72
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:    1 GERYGAQYSWDGVKSPERFLIYKRKMHRTMILHRELLRCLTKLPGHRVGSRALDLDRVILDTQLSTFITMFGCPPNYLHSKEMYKVLKKAEGKKATIRQAPRAIWEIMRTVPWYKEALM 357
            GERYGAQYSWDGVKSPERFLIYKRKMHRTMILHRELLRCLT+LPGHRVGSRALDLDRVILDTQLSTFITMFGCPPNYLHSKEMYKVLKKAE KKATIRQAPRAIWEIMRTVPWYKEALM
Sbjct:  604 GERYGAQYSWDGVKSPERFLIYKRKMHRTMILHRELLRCLTRLPGHRVGSRALDLDRVILDTQLSTFITMFGCPPNYLHSKEMYKVLKKAESKKATIRQAPRAIWEIMRTVPWYKEALM 722
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BLAST of mRNA_Ecto-sp9_F_contig1165.1377.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA5_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.030e-68
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1 
Query:    1 GERYGAQYSWDGVKSPERFLIYKRKMHRTMILHRELLRCLTKLPGHRVGSRALDLDRVILDTQLSTFITMFGCPPNYLHSKEMYKVLKKAEGKKATIRQAPRAIWEIMRTVPWYKEALM 357
            GERYGAQYSWDGVKSPERFLI+KRKM RTMILHRELLRCLT+LPG RVGSRALDLDRVILD QLSTFITMFGCPPNYLHSKEMYKVLKKAE KKATIRQAPRAIWEIMRTVPWYKEALM
Sbjct:  652 GERYGAQYSWDGVKSPERFLIHKRKMQRTMILHRELLRCLTRLPGQRVGSRALDLDRVILDMQLSTFITMFGCPPNYLHSKEMYKVLKKAEAKKATIRQAPRAIWEIMRTVPWYKEALM 770
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1165.1377.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.690e-7298.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.030e-6894.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1165contigEcto-sp9_F_contig1165:23879..25324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size363
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1165.1377.1prot_Ecto-sp9_F_contig1165.1377.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1165 23879..25324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928422.9897819-CDS-Ecto-sp9_F_contig1165:23878..240481622928422.9897819-CDS-Ecto-sp9_F_contig1165:23878..24048Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1165 23879..24048 +
1692277865.6756275-CDS-Ecto-sp9_F_contig1165:23878..240481692277865.6756275-CDS-Ecto-sp9_F_contig1165:23878..24048Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1165 23879..24048 +
1622928423.0318449-CDS-Ecto-sp9_F_contig1165:24612..247461622928423.0318449-CDS-Ecto-sp9_F_contig1165:24612..24746Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1165 24613..24746 +
1692277865.6842525-CDS-Ecto-sp9_F_contig1165:24612..247461692277865.6842525-CDS-Ecto-sp9_F_contig1165:24612..24746Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1165 24613..24746 +
1622928423.0497684-CDS-Ecto-sp9_F_contig1165:25265..253241622928423.0497684-CDS-Ecto-sp9_F_contig1165:25265..25324Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1165 25266..25324 +
1692277865.6935894-CDS-Ecto-sp9_F_contig1165:25265..253241692277865.6935894-CDS-Ecto-sp9_F_contig1165:25265..25324Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1165 25266..25324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1165.1377.1

>prot_Ecto-sp9_F_contig1165.1377.1 ID=prot_Ecto-sp9_F_contig1165.1377.1|Name=mRNA_Ecto-sp9_F_contig1165.1377.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=121bp
GERYGAQYSWDGVKSPERFLIYKRKMHRTMILHRELLRCLTKLPGHRVGS
RALDLDRVILDTQLSTFITMFGCPPNYLHSKEMYKVLKKAEGKKATIRQA
PRAIWEIMRTVPWYKEALMR*
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mRNA from alignment at Ecto-sp9_F_contig1165:23879..25324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1165.1377.1 ID=mRNA_Ecto-sp9_F_contig1165.1377.1|Name=mRNA_Ecto-sp9_F_contig1165.1377.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1446bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1165:23879..25324+ (Ectocarpus species9 EcSCA_722f female)
GGGGAGCGCTACGGCGCGCAGTACTCGTGGGACGGCGTCAAGTCGCCAGA
GCGCTTCCTCATCTACAAGAGAAAGATGCACCGCACCATGATCCTGCACC
GAGAACTGCTGCGATGTCTGACCAAGCTGCCCGGCCATAGGGTGGGGTCT
CGCGCGCTCGACCTAGATCGGTAAGCAAGAGAGAGAGAGAGAGAGAGAGA
GGAAGAGGGAGAGGCAGAGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGGAGGGAAGGAGAGAGACTCGCCCAAACAAGAGAACCAAAAAA
CACAAACGGTGCGAGTGCAGGTGCGTTTGTGCCGAGTGCGTCGAGTCAGA
AAATATATATAATCGCTCCAGAGAGCAGGCACACGTGAGCCCACGGGTGA
TTGCACTTCGAACAAGCCGCATCAATCATGTCACGTTCAAAACCGCTGGC
ACCTACTTAGCACATGGTGTCATCGTGATGATGGAGGTTTAATGACATCC
TTTAGCGGGGACATCGAGTGGTGATCAATGTAGCAAGAGAGGAAACAATT
TGGTTTGAGTTGGGTTCGTGGTATGTAGGCTTGTCCTCGTCGGTGGTACC
CGCCCACAGCCTCGTGCCAGCAGCAGGCACCAGCAGCTCTTAGGTCTCGC
TCCACACACGCGGCACTCGCTTCGTGTCGTCTGAGCGCTACTGTCGCCTT
GTTCGCCTCTCTCTTCTTTTTATTTCGCTTGCAGGGTCATACTCGACACG
CAGCTGAGCACCTTCATAACCATGTTCGGCTGCCCCCCGAACTACCTGCA
CTCGAAAGAGATGTACAAGGTTCTCAAGAAGGCCGAGGGCAAGAAGGCGA
CCATCCGGCAGGCCCCAAGTAAGAGCTTGCTTCTTGTCTATCTGTCTGTC
CTCTGCTGCCGCCGCTGCCGCCGCCGCTCGTGCATGCTTGGTCCTTACAA
AAGACTACAAGGCCACCCGCTATGGTCATTTCCTCCTGAACCGCCAGTCG
GGAGAACTTCGACCGAAAACGCAGAGAAGGGAGAGAGCACGTGCTTCAGT
TTTGTCGTGTCGTTCATTTTTGTGCTGGATTTGCCCGGGGGGGGGGGCGT
TGTTACCGTAGGTACGCGGGTCATGGCGCACCACCCTAGACCGAATATTT
GAGAGGTCGATTTCTCCACAGCACCAAGAGGGTGCGAAGCGCGACCGATA
CGTCTAAAGCAAGCTCTCGACAAGGTCTGGATGCGAGCACGATTGGCGAT
ACAAGTTCCTGTGGTGTTGTGGTTACAACGACACCACCACCCGCCTTGCC
TGCGCGCTTACTCCCCCCCCTCCCCGTTCCGTTTCGTTTCCCCTAATGTC
TCGCTCGATCTGCGTTATGTTTCGCCCGCCGCCGCAGGGGCTATCTGGGA
AATCATGCGCACCGTCCCGTGGTACAAGGAAGCGCTAATGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1165:23879..25324+

>mRNA_Ecto-sp9_F_contig1165.1377.1 ID=mRNA_Ecto-sp9_F_contig1165.1377.1|Name=mRNA_Ecto-sp9_F_contig1165.1377.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1165:23879..25324+ (Ectocarpus species9 EcSCA_722f female)
GGGGAGCGCTACGGCGCGCAGTACTCGTGGGACGGCGTCAAGTCGCCAGA
GCGCTTCCTCATCTACAAGAGAAAGATGCACCGCACCATGATCCTGCACC
GAGAACTGCTGCGATGTCTGACCAAGCTGCCCGGCCATAGGGTGGGGTCT
CGCGCGCTCGACCTAGATCGGGGGAGCGCTACGGCGCGCAGTACTCGTGG
GACGGCGTCAAGTCGCCAGAGCGCTTCCTCATCTACAAGAGAAAGATGCA
CCGCACCATGATCCTGCACCGAGAACTGCTGCGATGTCTGACCAAGCTGC
CCGGCCATAGGGTGGGGTCTCGCGCGCTCGACCTAGATCGGGTCATACTC
GACACGCAGCTGAGCACCTTCATAACCATGTTCGGCTGCCCCCCGAACTA
CCTGCACTCGAAAGAGATGTACAAGGTTCTCAAGAAGGCCGAGGGCAAGA
AGGCGACCATCCGGCAGGCCCCAAGGTCATACTCGACACGCAGCTGAGCA
CCTTCATAACCATGTTCGGCTGCCCCCCGAACTACCTGCACTCGAAAGAG
ATGTACAAGGTTCTCAAGAAGGCCGAGGGCAAGAAGGCGACCATCCGGCA
GGCCCCAAGGGCTATCTGGGAAATCATGCGCACCGTCCCGTGGTACAAGG
AAGCGCTAATGAGGTAAGGGCTATCTGGGAAATCATGCGCACCGTCCCGT
GGTACAAGGAAGCGCTAATGAGGTAA
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