mRNA_Ecto-sp9_F_contig1165.1376.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1165.1376.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG4_ECTSI) HSP 1 Score: 1142 bits (2953), Expect = 0.000e+0 Identity = 588/612 (96.08%), Postives = 597/612 (97.55%), Query Frame = 2
Query: 182 MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEQEQRSVGVVASRPVRMRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGASTSEVLDGVNRIIGSDKKDDYVEVVTTQTSKYRVPNKTREGAFLGSQRITAMQLYPVYDRLASTGLIFKSVVQKPATGNEEDGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAALLQATRREDRGLLGEEPERVRDLEGLHEGYGTADGAGVXXXXXXXXXXAGLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKFLDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATAPQPKRWAWRGRMKTFGHGEMILLPDAKTDPESLTEYAENFYAVEAAVHRESTRIKAASHF 2017
MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLE+EQRSVGVVASRPVR+RALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGAST+EVLDGVNRIIGSDKKDDYVEVVTTQTSKYRVPNKTREGAFLGSQRITAMQLYPVYDRLASTGLIFKSVVQKPAT NEE+GEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAALLQATRREDRGLLGEEPER+RDLEGLH+ DGAG XXXXXXXXX GLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAK LDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATAPQP+RWAWRGRMKTFGHGEM+LLPDAKTDPESL EYAENFYAVE AVHRESTRIKA +
Sbjct: 1 MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEKEQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGASTAEVLDGVNRIIGSDKKDDYVEVVTTQTSKYRVPNKTREGAFLGSQRITAMQLYPVYDRLASTGLIFKSVVQKPATDNEENGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAALLQATRREDRGLLGEEPERLRDLEGLHK-----DGAGAGXXXXXXXXXXGLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKSLDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATAPQPERWAWRGRMKTFGHGEMVLLPDAKTDPESLAEYAENFYAVETAVHRESTRIKAGERY 607
BLAST of mRNA_Ecto-sp9_F_contig1165.1376.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA5_9PHAE) HSP 1 Score: 845 bits (2182), Expect = 3.800e-285 Identity = 485/725 (66.90%), Postives = 500/725 (68.97%), Query Frame = 2
Query: 182 MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEQEQRSVGVVASRPVRMRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGASTSEVLDGVNRIIGSDKKDDYVEVVTTQTSKYRVPNKTREGAFLGSQRITAMQLYPVYDRLASTGLIFKSVVQKPATGNEEDGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAALLQATRREDRGLL------------GEEPERVRDLE------------------------GLHEGY----------------------------------------------------------------------------------------GTADGAGVXXXXXXXXXXAGLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKFLDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATAPQPKRWAWRGRMKTFGHGEMILLPDAKTDPESLTEYAENFYAVEAAVHR 1984
MAMPDLQGVWETAVREVALEGSNGCTLERLWKLV+L PSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEQEQRSVGVVASRPVR+RALGLDTATLKSVTLVSPAYLQVLE ASTGLIFKSVVQKPATGNEEDGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLK ++ L + G+ GE+ V ++ G+ +GY +ADG XXXXXXXXXX LGDVNWSDDDELDAMVDDIGREVDEAAAAAAAK LDKI+VDR+KFEMNP+YPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTA APQPKRWAWRGRMKTFGHGEMILLPDAKTDPESL EYAENFYAVEAA R
Sbjct: 1 MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVQLHRPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEQEQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLE-----------------------------------------------------------------------ASTGLIFKSVVQKPATGNEEDGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKHSSELEPPALKRPYGISLARSIMGIVKSRGEDGANVEAMQQQLHCSKRPAVKIVDLLVKNPSAYGIWKGYTREGRNAKVQALFYDEELLGRGNTKRPAATITTSAPAIKTDIPTPSKASPTQGAATPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADGXXXXXXXXXXXXXXXLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKSLDKIVVDRLKFEMNPMYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTAIAPQPKRWAWRGRMKTFGHGEMILLPDAKTDPESLAEYAENFYAVEAAGER 654
BLAST of mRNA_Ecto-sp9_F_contig1165.1376.1 vs.
Match: Hypothetical (protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKM4_DUNTE) HSP 1 Score: 58.2 bits (139), Expect = 5.700e-5 Identity = 49/178 (27.53%), Postives = 77/178 (43.26%), Query Frame = 2
Query: 218 AVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRE--LFLATYNDQGESNNLKRGDPEDSRLAA--------IKDIPTLEQ-EQRSVGVVASRPVRMRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGASTSEVLDGVN 718
AV EVA+EGS+GC++ LW+L+E P G + + VK ++W S++ +R + L+L + E +G +DS+ A + +P + E+R V + AS R LGL A L P + LE + R R GA S + +N
Sbjct: 8 AVEEVAVEGSSGCSVSELWRLLEAKLPLPSGHVTAL----------------TDTVKQYIWVSLLQQRPLDILLYLPSGTSPHEPRPATKGKKKDSQQAQEELQETCPFESVPHYKDAEERGVRIKASTLARNNVLGLYDAHTSRFQLSGPQ-IMTLETIARARHLGALQSNLASKMN 168 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1165.1376.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1165.1376.1 >prot_Ecto-sp9_F_contig1165.1376.1 ID=prot_Ecto-sp9_F_contig1165.1376.1|Name=mRNA_Ecto-sp9_F_contig1165.1376.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=616bp MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQback to top mRNA from alignment at Ecto-sp9_F_contig1165:11864..22786+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1165.1376.1 ID=mRNA_Ecto-sp9_F_contig1165.1376.1|Name=mRNA_Ecto-sp9_F_contig1165.1376.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=10923bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1165:11864..22786+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1165:11864..22786+ >mRNA_Ecto-sp9_F_contig1165.1376.1 ID=mRNA_Ecto-sp9_F_contig1165.1376.1|Name=mRNA_Ecto-sp9_F_contig1165.1376.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3696bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1165:11864..22786+ (Ectocarpus species9 EcSCA_722f female)back to top |