mRNA_Ecto-sp9_F_contig11647.1371.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11647.1371.1
Unique NamemRNA_Ecto-sp9_F_contig11647.1371.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11647.1371.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 6.590e-93
Identity = 145/152 (95.39%), Postives = 145/152 (95.39%), Query Frame = 1 
Query:    1 QAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLFRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRAGTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQR 456
            QAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVL  TTLCCGVCAPLRLLGWWVAAVSCVLKGDK GQRA T  RKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDI AAMDDPLQR
Sbjct:  775 QAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLLCTTLCCGVCAPLRLLGWWVAAVSCVLKGDKVGQRARTAVRKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIAAAMDDPLQR 926
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BLAST of mRNA_Ecto-sp9_F_contig11647.1371.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 9.160e-91
Identity = 147/152 (96.71%), Postives = 148/152 (97.37%), Query Frame = 1 
Query:    1 QAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLFRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRAGTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQR 456
            QAVSGACSVHGRFVFWLVLGPLA+ASAMLLNLAALF FWWFSVKRLFEDPRRAPRMLYVL RTTL CGVCAPLRLLGWWVAAVSCVLKGDKAGQRA TVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQR
Sbjct: 1481 QAVSGACSVHGRFVFWLVLGPLAVASAMLLNLAALFYFWWFSVKRLFEDPRRAPRMLYVLLRTTLRCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQR 1632
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11647.1371.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.590e-9395.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.160e-9196.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11647contigEcto-sp9_F_contig11647:1783..3454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size458
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11647.1371.1prot_Ecto-sp9_F_contig11647.1371.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11647 1785..3454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928422.3544304-CDS-Ecto-sp9_F_contig11647:1784..19301622928422.3544304-CDS-Ecto-sp9_F_contig11647:1784..1930Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11647 1785..1930 -
1692277865.3040154-CDS-Ecto-sp9_F_contig11647:1784..19301692277865.3040154-CDS-Ecto-sp9_F_contig11647:1784..1930Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11647 1785..1930 -
1622928422.3668597-CDS-Ecto-sp9_F_contig11647:2431..26161622928422.3668597-CDS-Ecto-sp9_F_contig11647:2431..2616Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11647 2432..2616 -
1692277865.3117867-CDS-Ecto-sp9_F_contig11647:2431..26161692277865.3117867-CDS-Ecto-sp9_F_contig11647:2431..2616Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11647 2432..2616 -
1622928422.3784118-CDS-Ecto-sp9_F_contig11647:3329..34541622928422.3784118-CDS-Ecto-sp9_F_contig11647:3329..3454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11647 3330..3454 -
1692277865.321165-CDS-Ecto-sp9_F_contig11647:3329..34541692277865.321165-CDS-Ecto-sp9_F_contig11647:3329..3454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11647 3330..3454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11647.1371.1

>prot_Ecto-sp9_F_contig11647.1371.1 ID=prot_Ecto-sp9_F_contig11647.1371.1|Name=mRNA_Ecto-sp9_F_contig11647.1371.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=152bp
QAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDP
RRAPRMLYVLFRTTLCCGVCAPLRLLGWWVAAVSCVLKGDKAGQRAGTVA
RKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPL
QR
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mRNA from alignment at Ecto-sp9_F_contig11647:1783..3454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11647.1371.1 ID=mRNA_Ecto-sp9_F_contig11647.1371.1|Name=mRNA_Ecto-sp9_F_contig11647.1371.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11647:1783..3454- (Ectocarpus species9 EcSCA_722f female)
CAGGCCGTGTCAGGCGCGTGTTCGGTGCATGGACGGTTCGTGTTCTGGCT
AGTCCTGGGACCCTTGGCCCTGGCTTCGGCGATGCTGCTGAACTTGGCCG
CGCTCTTCTGTTTTTGGTGGTTCAGGTGAGAAGCAGCAATAGTCGGATAT
CTAGTAGCAGTTCTGGCCGTTTACCCTTGGTTCCTTCCTCTCCATCGCCC
ATGGCACGCAAACACCCCTCCCAGGAAGAGGGTATAAGAAAGCTCGTTTG
GAGTTGTGGTAACTTTTGTTTTCGGGTATGTACGGCCGGTAGAATGGTAG
ACTAGACGAGGTGGCAAGTATCGCTGATTGGCTTCTGGTTTGCGAGGCAG
AAGAGTCGAGGCAAACAAAAGTGACCCATGCGTCTTCTTCGTGTGTATTT
GGCACAAGGCTAAGCGTCTCCTTCGAATCACGAATCACATGTCAAATTTT
CCGTGCCAAGTGTTCCATTGGTGCCGGGCAGGGCGAGAATCACGAATCAC
ATGTCAATCGCTGCCAAGTGTTCCTTCCATTGGTGCTATGCAAAGGCAGG
GCGAGCGAGTATTCTCGCTCACCCACAGCATCGCGTTTGGCCTGAGGTAC
TCTCGCTGCTGTAGGATGCTTACACGCGGCACATGAATACTGCTGTCTTG
TGTCGCGAGCAGGGCTCAATCGGTGTTGTATCCCTAGCTTCGCGCTCGTG
CTTCTCTCTCGCACTCACCTTCACTCCCCTCCATCGATGGTTTCTCTGCC
CCCTGCCTCTCCTTCAATCGCTCTCTCTCACTCTCCACCTATCCCGCTTT
CTCTTGTTGCTCCCGTGTTGCCCTACCACCGCACACAGCGTGAAGCGCCT
GTTCGAAGATCCTCGGCGGGCCCCGAGGATGCTGTACGTCCTCTTCCGCA
CCACGCTTTGTTGCGGAGTGTGTGCCCCCCTTAGGCTGCTGGGGTGGTGG
GTTGCGGCTGTGTCGTGCGTGCTGAAAGGAGACAAGGCAGGACAGAGAGC
GGGGACGGTTGCGAGAAAGGCTGGTGAGTGAGATTGCGCTCTTTTTTTTT
CTCCTCACGAGATGGTACTGATGTTGACAACTCACTTCGTGCATGACACA
AAATTGCTGAGTCGGCAAGGGATTCATTGCGTGCATGACCTACCGAAAGT
GTTGTAACGCTGCTAGCCCTAGTTGCAGTCATACATACCTCCAGTAGTCT
TCCCTTGTGAGCAATCATTTCACGTGTTAGTAACATGGATGGGGAAGGAT
GTCTACCTCTATGCACGGCCGAGGATCCAACATGAGCAACTCTGTGGGTT
CCTAGTGACGCACACACATGATACACCATCTCCTTCTACCACGGATCGGG
TCGCTCCCGTTGCAAACATTCGGCAGTTACATTCCATTCCCCCGTTTCCC
CTGTTAGAAATAATAATTAACAACATCGCAAATATCACCACTTCCCACCC
ACAGTTTCGACCTCCACTTGACTCGGCTGCCGTCGCTCCCTTTCATGAAT
CGACCCGGGTGACTCACACGGCAGTCCTGAAGGGGAGAGAGGGCGGGGAC
TACCACCTGTCGCATCTCTTGAGGCGAACGAGGTGGGGGGCGGGCGGAGG
AAGCAGCAGCCTCGCACAGGGCTTTTCGGTGCGCGACATCGTGGCGGCGA
TGGACGATCCGCTGCAGAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11647:1783..3454-

>mRNA_Ecto-sp9_F_contig11647.1371.1 ID=mRNA_Ecto-sp9_F_contig11647.1371.1|Name=mRNA_Ecto-sp9_F_contig11647.1371.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11647:1783..3454- (Ectocarpus species9 EcSCA_722f female)
CAGGCCGTGTCAGGCGCGTGTTCGGTGCATGGACGGTTCGTGTTCTGGCT
AGTCCTGGGACCCTTGGCCCTGGCTTCGGCGATGCTGCTGAACTTGGCCG
CGCTCTTCTGTTTTTGGTGGTTCAGCAGGCCGTGTCAGGCGCGTGTTCGG
TGCATGGACGGTTCGTGTTCTGGCTAGTCCTGGGACCCTTGGCCCTGGCT
TCGGCGATGCTGCTGAACTTGGCCGCGCTCTTCTGTTTTTGGTGGTTCAG
CGTGAAGCGCCTGTTCGAAGATCCTCGGCGGGCCCCGAGGATGCTGTACG
TCCTCTTCCGCACCACGCTTTGTTGCGGAGTGTGTGCCCCCCTTAGGCTG
CTGGGGTGGTGGGTTGCGGCTGTGTCGTGCGTGCTGAAAGGAGACAAGGC
AGGACAGAGAGCGGGGACGGTTGCGAGAAAGGCTGCGTGAAGCGCCTGTT
CGAAGATCCTCGGCGGGCCCCGAGGATGCTGTACGTCCTCTTCCGCACCA
CGCTTTGTTGCGGAGTGTGTGCCCCCCTTAGGCTGCTGGGGTGGTGGGTT
GCGGCTGTGTCGTGCGTGCTGAAAGGAGACAAGGCAGGACAGAGAGCGGG
GACGGTTGCGAGAAAGGCTGTCCTGAAGGGGAGAGAGGGCGGGGACTACC
ACCTGTCGCATCTCTTGAGGCGAACGAGGTGGGGGGCGGGCGGAGGAAGC
AGCAGCCTCGCACAGGGCTTTTCGGTGCGCGACATCGTGGCGGCGATGGA
CGATCCGCTGCAGAGGTCCTGAAGGGGAGAGAGGGCGGGGACTACCACCT
GTCGCATCTCTTGAGGCGAACGAGGTGGGGGGCGGGCGGAGGAAGCAGCA
GCCTCGCACAGGGCTTTTCGGTGCGCGACATCGTGGCGGCGATGGACGAT
CCGCTGCAGAGG
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