mRNA_Ecto-sp9_F_contig11608.1352.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE) HSP 1 Score: 498 bits (1283), Expect = 1.730e-176 Identity = 261/266 (98.12%), Postives = 263/266 (98.87%), Query Frame = 1
Query: 1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 798
GWRARLLGDTTFMTKLAIEMVTGT AQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAW TAAAAAPPVV G+GAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLA+NPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ
Sbjct: 37 GWRARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWTTAAAAAPPVVAGKGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 302
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI) HSP 1 Score: 499 bits (1284), Expect = 1.030e-174 Identity = 263/267 (98.50%), Postives = 265/267 (99.25%), Query Frame = 1
Query: 1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH 801
GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGK+FMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVV RGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLA+NPGLSSLASTAVRSANLYVGSLTIVD LRYVGVQH
Sbjct: 161 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVERGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDGLRYVGVQH 427
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF64_9STRA) HSP 1 Score: 186 bits (472), Expect = 1.610e-54 Identity = 112/243 (46.09%), Postives = 141/243 (58.02%), Query Frame = 1
Query: 79 QFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAG--GTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH 801
Q LAEY+KR +F +E DFV AD LT FANFAAVW SCPT+ +AA G +L +F+ +CPSNAFQ+VVA + +S+A+RGAAL+ PMP+LFVIGFGA AGYGL + + A P +V P+ S LA+G FLAV +NLRYQ IAG +EQR D LA P +S+ S +R+ANLY+G+ IVDWLR VGVQH
Sbjct: 2 QVLAEYEKRRDKFFKEFDFVLADILTSCFANFAAVWASCPTMRPAIAGSADAASKGMFASLGRFMNSCPSNAFQRVVAP---ATHYSLAQRGAALIKPMPQLFVIGFGACAAGYGLTSLMSHIRL------ALDPTMV-------------------------KNTEDAPIFKSSLAIGAFLAVSSNLRYQIIAGGIEQRFLDVALASKPAVSNACSFVLRTANLYLGASMIVDWLRIVGVQH 210
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK) HSP 1 Score: 156 bits (394), Expect = 5.020e-42 Identity = 98/268 (36.57%), Postives = 143/268 (53.36%), Query Frame = 1
Query: 1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPP---VPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGV 795
G+R RL+ D +F+TK A+E+ G Q AE ++RG + +Q+LDFV AD LTC+ ANF AVWL+ PT+A A A AG +++F +CP NAFQKV F+VA+R L+ P+LF++GF A++AG+G GL K +K A+ EE P V VL L +G +L V TN+RYQ +AG +E+R+ + A L++ S R+ N +VGS +V L++ G+
Sbjct: 62 GFRNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALA---PPPAAAGNAVKRFFDSCPGNAFQKVTPGRA---PFTVAQRCGTLVGAFPQLFLVGFAASVAGFGFTLGLS----------------------------KLREKLNPASAEEEPLGGPAKEVQVLKPALVIGAYLGVSTNVRYQLVAGLLEERLLGALFANQQFLNTAGSFIFRTGNTFVGSSQMVMTLKWTGL 295
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EMP3_HEMAN) HSP 1 Score: 152 bits (385), Expect = 9.730e-41 Identity = 100/269 (37.17%), Postives = 145/269 (53.90%), Query Frame = 1
Query: 4 WRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGL----IAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 798
+R RLL D TF+ K+AIE+V G A Q +AEYQ RGK F++E DFV A TC+ ANF ++L+ PT+ KA +A A KF +CP NAFQ V+ +G + +F +R + PMP+LF IG A GY +A + F+ A + +G+ G+AVG ++A+ +NLRYQF+AG +EQR+ DT+LA L + ST +R+AN Y+GS +V +LR++G+Q
Sbjct: 56 FRDRLLADNTFLNKVAIEVVIGGAMQLIAEYQNRGKAFVKEFDFVIAGIATCVLANFFTLYLAAPTLVPKAASLTTSAVA-----KFFNSCPDNAFQTVL-KGMPAPSF--VQRCGGIFKPMPELFFIGLVAASGGYLYTACNVAVRKFFNPKSQGGADLDALQIGK---------------------------------IGVAVGAYVAISSNLRYQFMAGVLEQRVLDTLLAGQVSLRTAGSTVIRTANTYLGSYLLVAYLRWLGLQ 283
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VLI5_HELAN) HSP 1 Score: 152 bits (383), Expect = 1.200e-39 Identity = 101/269 (37.55%), Postives = 146/269 (54.28%), Query Frame = 1
Query: 1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH*R 807
G++ RLL D FMTK+AIE G + AE +KR + F +ELDFV AD + L A+F VWL PTV+++A A + G + KF A CP NAFQ VA G S +S+ +R A+ KLF +G GA+L G G+ L A+KA A EA + +P+L + +A G+++AV +NLRYQ IAG +EQR+ + +L ++ + S AVR+ N ++GSL VD+ R++G+Q R
Sbjct: 144 GFKERLLADDLFMTKVAIECGVGIFTKSAAELEKRRENFSKELDFVTADVIMALIADFMLVWLPAPTVSLRA----PVAVSAGRVAKFFAGCPDNAFQ--VALAGTS--YSLLQRIGAIARNGAKLFGVGTGASLIGTGITNLLIN-----------------------------ARKAVDKTFAAEADEEDIPILSTSVAYGVYMAVSSNLRYQVIAGVIEQRMLEPLLHQHKLILSAICFAVRTGNTFLGSLMWVDYARWIGIQRSR 375
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9G5_CHABU) HSP 1 Score: 150 bits (379), Expect = 3.870e-38 Identity = 102/266 (38.35%), Postives = 145/266 (54.51%), Query Frame = 1
Query: 1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 798
G+R RLL D F++K+ E G + AEY++R RFM+ELDFV AD + + A+F VWL PTVA++A AK + KF CP NAFQ VA G T+++ +R A++ KLF +G GA+L G GL ++R +AA E+A+ VP+L + +A G ++AV +NLRYQ +AG VEQRI + +L + SL+S AVR+AN ++GSL VD+ +VGVQ
Sbjct: 263 GFRERLLADDLFVSKVLFECGIGVCTKTAAEYERRRDRFMKELDFVFADVIMAIIADFMLVWLPAPTVAIRA----PIAKGANSFAKFFYNCPDNAFQ--VALNGT--TYTLLQRCGAIVRNGAKLFAVGTGASLVGTAATNGLIA--------------------------VRRILDPSSAASGEDAED--VPILETSVAYGAYMAVSSNLRYQVLAGVVEQRILEPLLHQQKLALSLSSFAVRTANTFLGSLLWVDYAIWVGVQ 492
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TLP3_CAJCA) HSP 1 Score: 147 bits (372), Expect = 3.920e-38 Identity = 100/269 (37.17%), Postives = 146/269 (54.28%), Query Frame = 1
Query: 1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH*R 807
G+R RLL D F+TK+AIE G + AE +KR ++F +ELDFV AD + + A+F VWL PTV+++ A + GT+ KF CP NAFQ VA G S +++ +R A++ KLF +G GA+L G G+ L A+K + A EA+ VPV+ + +A G+++AV +NLRYQ +AG +EQRI + +L + + S AVR+ N ++GSL VD+ R+VGVQ R
Sbjct: 136 GFRERLLADDLFLTKVAIECGVGIFTKTAAELEKRKEKFSKELDFVCADVIMAIVADFMLVWLPAPTVSLR----PPLAVSAGTIAKFFYGCPENAFQ--VALAGTS--YTLIQRIGAIVRNGAKLFAVGTGASLIGTGVTNALIN-----------------------------ARKVVDKSFAAEAED--VPVISTSIAYGVYMAVSSNLRYQILAGIIEQRILEPLLHQQKLILSAICFAVRTGNTFLGSLLWVDYARWVGVQRSR 365
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: protein (RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125CEE82) HSP 1 Score: 148 bits (373), Expect = 4.950e-38 Identity = 103/270 (38.15%), Postives = 143/270 (52.96%), Query Frame = 1
Query: 1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH*RA 810
G+R RLLGD F+ KL +E G + AE QKRG++F +ELDFV AD + L A+F VWL PTV+++ AA GG L F CP NAFQ +A G S TF +R ALL KLF IG GA++ G + L R +KA + A EA+ +P+L +G A G+++++ +NLRYQ +AG +EQR+ + +L L S A R+ N ++GSL VD+ R++GVQ RA
Sbjct: 162 GFRERLLGDDLFLAKLGMECGVGIFTKMAAELQKRGEKFSKELDFVCADVIMALVADFMLVWLPAPTVSLRPPLAITAA--GGPLTTFFYNCPDNAFQ--IALAGTSYTF--LQRLGALLRNGAKLFAIGTGASVTGTVIT-----------------------------NSLIRLRKAIDKSFAREAED--IPILATGAAYGVYMSLSSNLRYQTLAGIIEQRLLEPLLHNQKILLSALCFAFRTGNTFLGSLMWVDFARWIGVQRSRA 394
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Protein (RETICULATA-RELATED 4, chloroplastic-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PX79_9MAGN) HSP 1 Score: 147 bits (372), Expect = 5.450e-38 Identity = 99/267 (37.08%), Postives = 144/267 (53.93%), Query Frame = 1
Query: 1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEA-QKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 798
G++ RLL D F+ K+ +E+V G A+ AEY +RG++F +ELDFV AD + + A+F VWL PTV+++ A + G + KF CP NAFQ +A G S +S +R A+ KLFV+G A++ G G+ L KAR A E A + VP+L + +A G+++AV +NLRYQ +AG VEQRI + +L ++ + S AVR+ N Y+GSL VD+ R+VGVQ
Sbjct: 156 GFKERLLADELFLHKITMEIVVGMFAKTAAEYNRRGEKFFKELDFVIADVVMAIIADFMLVWLPAPTVSLR----PPLAISAGPIAKFFHTCPDNAFQ--IALRGTS--YSFLQRIGAIARNGAKLFVVGTSASMVGTGVTNALI--------------------------------KARKAVNTEYAGEVEDVPILSTSVAYGVYMAVSSNLRYQLLAGVVEQRILEPLLHQHKLMLSAMCFAVRTGNTYLGSLMWVDYARWVGVQ 382 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11608.1352.1 >prot_Ecto-sp9_F_contig11608.1352.1 ID=prot_Ecto-sp9_F_contig11608.1352.1|Name=mRNA_Ecto-sp9_F_contig11608.1352.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=256bp MTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWback to top mRNA from alignment at Ecto-sp9_F_contig11608:1136..3119- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11608.1352.1 ID=mRNA_Ecto-sp9_F_contig11608.1352.1|Name=mRNA_Ecto-sp9_F_contig11608.1352.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1984bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11608:1136..3119- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11608:1136..3119- >mRNA_Ecto-sp9_F_contig11608.1352.1 ID=mRNA_Ecto-sp9_F_contig11608.1352.1|Name=mRNA_Ecto-sp9_F_contig11608.1352.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11608:1136..3119- (Ectocarpus species9 EcSCA_722f female)back to top |