mRNA_Ecto-sp9_F_contig11608.1352.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11608.1352.1
Unique NamemRNA_Ecto-sp9_F_contig11608.1352.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE)

HSP 1 Score: 498 bits (1283), Expect = 1.730e-176
Identity = 261/266 (98.12%), Postives = 263/266 (98.87%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 798
            GWRARLLGDTTFMTKLAIEMVTGT AQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAW TAAAAAPPVV G+GAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLA+NPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ
Sbjct:   37 GWRARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWTTAAAAAPPVVAGKGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 302          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI)

HSP 1 Score: 499 bits (1284), Expect = 1.030e-174
Identity = 263/267 (98.50%), Postives = 265/267 (99.25%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH 801
            GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGK+FMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVV RGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLA+NPGLSSLASTAVRSANLYVGSLTIVD LRYVGVQH
Sbjct:  161 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVERGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDGLRYVGVQH 427          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF64_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.610e-54
Identity = 112/243 (46.09%), Postives = 141/243 (58.02%), Query Frame = 1
Query:   79 QFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAG--GTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH 801
            Q LAEY+KR  +F +E DFV AD LT  FANFAAVW SCPT+        +AA  G   +L +F+ +CPSNAFQ+VVA    +  +S+A+RGAAL+ PMP+LFVIGFGA  AGYGL + +           A  P +V                               P+  S LA+G FLAV +NLRYQ IAG +EQR  D  LA  P +S+  S  +R+ANLY+G+  IVDWLR VGVQH
Sbjct:    2 QVLAEYEKRRDKFFKEFDFVLADILTSCFANFAAVWASCPTMRPAIAGSADAASKGMFASLGRFMNSCPSNAFQRVVAP---ATHYSLAQRGAALIKPMPQLFVIGFGACAAGYGLTSLMSHIRL------ALDPTMV-------------------------KNTEDAPIFKSSLAIGAFLAVSSNLRYQIIAGGIEQRFLDVALASKPAVSNACSFVLRTANLYLGASMIVDWLRIVGVQH 210          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK)

HSP 1 Score: 156 bits (394), Expect = 5.020e-42
Identity = 98/268 (36.57%), Postives = 143/268 (53.36%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPP---VPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGV 795
            G+R RL+ D +F+TK A+E+  G   Q  AE ++RG + +Q+LDFV AD LTC+ ANF AVWL+ PT+A  A      A AG  +++F  +CP NAFQKV         F+VA+R   L+   P+LF++GF A++AG+G   GL                             K  +K   A+  EE    P   V VL   L +G +L V TN+RYQ +AG +E+R+   + A    L++  S   R+ N +VGS  +V  L++ G+
Sbjct:   62 GFRNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALA---PPPAAAGNAVKRFFDSCPGNAFQKVTPGRA---PFTVAQRCGTLVGAFPQLFLVGFAASVAGFGFTLGLS----------------------------KLREKLNPASAEEEPLGGPAKEVQVLKPALVIGAYLGVSTNVRYQLVAGLLEERLLGALFANQQFLNTAGSFIFRTGNTFVGSSQMVMTLKWTGL 295          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EMP3_HEMAN)

HSP 1 Score: 152 bits (385), Expect = 9.730e-41
Identity = 100/269 (37.17%), Postives = 145/269 (53.90%), Query Frame = 1
Query:    4 WRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGL----IAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 798
            +R RLL D TF+ K+AIE+V G A Q +AEYQ RGK F++E DFV A   TC+ ANF  ++L+ PT+  KA     +A A     KF  +CP NAFQ V+ +G  + +F   +R   +  PMP+LF IG  A   GY      +A  + F+      A    + +G+                                  G+AVG ++A+ +NLRYQF+AG +EQR+ DT+LA    L +  ST +R+AN Y+GS  +V +LR++G+Q
Sbjct:   56 FRDRLLADNTFLNKVAIEVVIGGAMQLIAEYQNRGKAFVKEFDFVIAGIATCVLANFFTLYLAAPTLVPKAASLTTSAVA-----KFFNSCPDNAFQTVL-KGMPAPSF--VQRCGGIFKPMPELFFIGLVAASGGYLYTACNVAVRKFFNPKSQGGADLDALQIGK---------------------------------IGVAVGAYVAISSNLRYQFMAGVLEQRVLDTLLAGQVSLRTAGSTVIRTANTYLGSYLLVAYLRWLGLQ 283          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VLI5_HELAN)

HSP 1 Score: 152 bits (383), Expect = 1.200e-39
Identity = 101/269 (37.55%), Postives = 146/269 (54.28%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH*R 807
            G++ RLL D  FMTK+AIE   G   +  AE +KR + F +ELDFV AD +  L A+F  VWL  PTV+++A      A + G + KF A CP NAFQ  VA  G S  +S+ +R  A+     KLF +G GA+L G G+   L                               A+KA     A EA +  +P+L + +A G+++AV +NLRYQ IAG +EQR+ + +L ++  + S    AVR+ N ++GSL  VD+ R++G+Q  R
Sbjct:  144 GFKERLLADDLFMTKVAIECGVGIFTKSAAELEKRRENFSKELDFVTADVIMALIADFMLVWLPAPTVSLRA----PVAVSAGRVAKFFAGCPDNAFQ--VALAGTS--YSLLQRIGAIARNGAKLFGVGTGASLIGTGITNLLIN-----------------------------ARKAVDKTFAAEADEEDIPILSTSVAYGVYMAVSSNLRYQVIAGVIEQRMLEPLLHQHKLILSAICFAVRTGNTFLGSLMWVDYARWIGIQRSR 375          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9G5_CHABU)

HSP 1 Score: 150 bits (379), Expect = 3.870e-38
Identity = 102/266 (38.35%), Postives = 145/266 (54.51%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 798
            G+R RLL D  F++K+  E   G   +  AEY++R  RFM+ELDFV AD +  + A+F  VWL  PTVA++A      AK   +  KF   CP NAFQ  VA  G   T+++ +R  A++    KLF +G GA+L G     GL                            ++R     +AA  E+A+   VP+L + +A G ++AV +NLRYQ +AG VEQRI + +L +     SL+S AVR+AN ++GSL  VD+  +VGVQ
Sbjct:  263 GFRERLLADDLFVSKVLFECGIGVCTKTAAEYERRRDRFMKELDFVFADVIMAIIADFMLVWLPAPTVAIRA----PIAKGANSFAKFFYNCPDNAFQ--VALNGT--TYTLLQRCGAIVRNGAKLFAVGTGASLVGTAATNGLIA--------------------------VRRILDPSSAASGEDAED--VPILETSVAYGAYMAVSSNLRYQVLAGVVEQRILEPLLHQQKLALSLSSFAVRTANTFLGSLLWVDYAIWVGVQ 492          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TLP3_CAJCA)

HSP 1 Score: 147 bits (372), Expect = 3.920e-38
Identity = 100/269 (37.17%), Postives = 146/269 (54.28%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH*R 807
            G+R RLL D  F+TK+AIE   G   +  AE +KR ++F +ELDFV AD +  + A+F  VWL  PTV+++       A + GT+ KF   CP NAFQ  VA  G S  +++ +R  A++    KLF +G GA+L G G+   L                               A+K    + A EA+   VPV+ + +A G+++AV +NLRYQ +AG +EQRI + +L +   + S    AVR+ N ++GSL  VD+ R+VGVQ  R
Sbjct:  136 GFRERLLADDLFLTKVAIECGVGIFTKTAAELEKRKEKFSKELDFVCADVIMAIVADFMLVWLPAPTVSLR----PPLAVSAGTIAKFFYGCPENAFQ--VALAGTS--YTLIQRIGAIVRNGAKLFAVGTGASLIGTGVTNALIN-----------------------------ARKVVDKSFAAEAED--VPVISTSIAYGVYMAVSSNLRYQILAGIIEQRILEPLLHQQKLILSAICFAVRTGNTFLGSLLWVDYARWVGVQRSR 365          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: protein (RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125CEE82)

HSP 1 Score: 148 bits (373), Expect = 4.950e-38
Identity = 103/270 (38.15%), Postives = 143/270 (52.96%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQH*RA 810
            G+R RLLGD  F+ KL +E   G   +  AE QKRG++F +ELDFV AD +  L A+F  VWL  PTV+++      AA  GG L  F   CP NAFQ  +A  G S TF   +R  ALL    KLF IG GA++ G  +                                L R +KA   + A EA+   +P+L +G A G+++++ +NLRYQ +AG +EQR+ + +L     L S    A R+ N ++GSL  VD+ R++GVQ  RA
Sbjct:  162 GFRERLLGDDLFLAKLGMECGVGIFTKMAAELQKRGEKFSKELDFVCADVIMALVADFMLVWLPAPTVSLRPPLAITAA--GGPLTTFFYNCPDNAFQ--IALAGTSYTF--LQRLGALLRNGAKLFAIGTGASVTGTVIT-----------------------------NSLIRLRKAIDKSFAREAED--IPILATGAAYGVYMSLSSNLRYQTLAGIIEQRLLEPLLHNQKILLSALCFAFRTGNTFLGSLMWVDFARWIGVQRSRA 394          
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Match: Protein (RETICULATA-RELATED 4, chloroplastic-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PX79_9MAGN)

HSP 1 Score: 147 bits (372), Expect = 5.450e-38
Identity = 99/267 (37.08%), Postives = 144/267 (53.93%), Query Frame = 1
Query:    1 GWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVGRGAAKSKRGLKRAQKARAAALAEEA-QKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 798
            G++ RLL D  F+ K+ +E+V G  A+  AEY +RG++F +ELDFV AD +  + A+F  VWL  PTV+++       A + G + KF   CP NAFQ  +A  G S  +S  +R  A+     KLFV+G  A++ G G+   L                                 KAR A   E A +   VP+L + +A G+++AV +NLRYQ +AG VEQRI + +L ++  + S    AVR+ N Y+GSL  VD+ R+VGVQ
Sbjct:  156 GFKERLLADELFLHKITMEIVVGMFAKTAAEYNRRGEKFFKELDFVIADVVMAIIADFMLVWLPAPTVSLR----PPLAISAGPIAKFFHTCPDNAFQ--IALRGTS--YSFLQRIGAIARNGAKLFVVGTSASMVGTGVTNALI--------------------------------KARKAVNTEYAGEVEDVPILSTSVAYGVYMAVSSNLRYQLLAGVVEQRILEPLLHQHKLMLSAMCFAVRTGNTYLGSLMWVDYARWVGVQ 382          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11608.1352.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.730e-17698.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.030e-17498.50protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.610e-5446.09protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical5.020e-4236.57protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical9.730e-4137.17protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Uncharacterized1.200e-3937.55protein n=1 Tax=Helianthus annuus TaxID=4232 RepID... [more]
Uncharacterized3.870e-3838.35protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0... [more]
Uncharacterized3.920e-3837.17protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A... [more]
protein4.950e-3838.15RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=I... [more]
Protein5.450e-3837.08RETICULATA-RELATED 4, chloroplastic-like protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11608contigEcto-sp9_F_contig11608:1136..3119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score478.0
Seed ortholog evalue2.7e-132
Seed eggNOG ortholog2880.D7FZL4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Protein RETICULATA-related
EggNOG OGs28IK9@1,2QQX6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size918
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11608.1352.1prot_Ecto-sp9_F_contig11608.1352.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11608 1250..3083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928419.508404-UTR-Ecto-sp9_F_contig11608:1135..12491622928419.508404-UTR-Ecto-sp9_F_contig11608:1135..1249Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11608 1136..1249 -
1692277864.100731-UTR-Ecto-sp9_F_contig11608:1135..12491692277864.100731-UTR-Ecto-sp9_F_contig11608:1135..1249Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11608 1136..1249 -
1622928419.6029358-UTR-Ecto-sp9_F_contig11608:3083..31191622928419.6029358-UTR-Ecto-sp9_F_contig11608:3083..3119Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11608 3084..3119 -
1692277864.139585-UTR-Ecto-sp9_F_contig11608:3083..31191692277864.139585-UTR-Ecto-sp9_F_contig11608:3083..3119Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11608 3084..3119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928419.5293114-CDS-Ecto-sp9_F_contig11608:1249..14081622928419.5293114-CDS-Ecto-sp9_F_contig11608:1249..1408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11608 1250..1408 -
1692277864.1125617-CDS-Ecto-sp9_F_contig11608:1249..14081692277864.1125617-CDS-Ecto-sp9_F_contig11608:1249..1408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11608 1250..1408 -
1622928419.5681953-CDS-Ecto-sp9_F_contig11608:2130..25171622928419.5681953-CDS-Ecto-sp9_F_contig11608:2130..2517Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11608 2131..2517 -
1692277864.1242802-CDS-Ecto-sp9_F_contig11608:2130..25171692277864.1242802-CDS-Ecto-sp9_F_contig11608:2130..2517Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11608 2131..2517 -
1622928419.5861194-CDS-Ecto-sp9_F_contig11608:2861..30831622928419.5861194-CDS-Ecto-sp9_F_contig11608:2861..3083Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11608 2862..3083 -
1692277864.132097-CDS-Ecto-sp9_F_contig11608:2861..30831692277864.132097-CDS-Ecto-sp9_F_contig11608:2861..3083Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11608 2862..3083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11608.1352.1

>prot_Ecto-sp9_F_contig11608.1352.1 ID=prot_Ecto-sp9_F_contig11608.1352.1|Name=mRNA_Ecto-sp9_F_contig11608.1352.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=256bp
MTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVW
LSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSV
AERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVV
GRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNL
RYQFIAGAVEQRIFDTMLARNPGLSSLASTAVRSANLYVGSLTIVDWLRY
VGVQH*
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mRNA from alignment at Ecto-sp9_F_contig11608:1136..3119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11608.1352.1 ID=mRNA_Ecto-sp9_F_contig11608.1352.1|Name=mRNA_Ecto-sp9_F_contig11608.1352.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1984bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11608:1136..3119- (Ectocarpus species9 EcSCA_722f female)
GGCTGGAGAGCGCGTCTCCTGGGAGACACCACGTTCATGACGAAGCTGGC CATCGAGATGGTCACCGGCACTGCGGCTCAGTTCCTGGCGGAGTACCAGA AGAGGGGCAAGAGGTTCATGCAGGAGCTCGACTTCGTGGCAGCGGACACC TTGACGTGCCTCTTCGCCAACTTTGCCGCGGTGTGGCTGTCGTGCCCCAC CGTGGCCGTCAAGGCCGTGTGTAAGAAGGAGGCGGCGAAGGCGGGCGGGA CGTTGCAGGTGAACGGAAGCGAAAGAAAAGCGCCGCAGGCGCCACAGCCG CGGGCGTGTGGTAAATGTGCCGGTGAAGTGATTTGCATCGATGTAGCTGT TGGTGTTGCGTTGTCTTCACGCCCGATGAGAGTCGCGTTTTTTGTTTCAG CTCAAAGGCGTTCGCGCTAGTTTGACCAGTACGGGTATTGAAGGTACTGA GCGGAGACCGGAACGGTTTTTAATGTGAACATAACTCAACAACGACAACA ACAACAACAACATATCCTCTTCAAGCTCCTCCTATCAAACCCATCCTCTT TCTACGATTCGCAGCGAACCCAGCCCCCCCCCCCTTCATTTTTCCGCCGC AGAAATTCCTGGCCGCGTGCCCTTCGAACGCGTTCCAAAAAGTGGTGGCA GAAGGAGGGGTTTCTAAGACCTTCAGCGTCGCCGAGAGGGGAGCGGCCCT CCTGGTCCCCATGCCCAAGCTCTTCGTGATCGGCTTCGGAGCCACGCTAG CGGGGTACGGCCTGATCGCCGGCCTGGAGACCTTCTCGGCCTGGAGAACC GCCGCCGCCGCGGCACCGCCGGTGGTGGTAGGGAGGGGCGCCGCGAAATC GAAGAGGGGTCTCAAGAGAGCGCAGAAGGCTCGGGCGGCGGCTCTTGCGG AAGAGGCGCAGAAGCCCCCGGTGCCGGTGCTGGGGTCCGGGTTGGCGGTG GGGATGTTCCTGGCCGTGTGGACGAATTTACGTTATCAGGTACAATACGG CAGCGGCAATTGTCGGCTTTATCCCTGGTTTAATTAAGGACCCCATGTTT TGCAGAAGCTTGGTGCCCCGCAGAAGTGTATAAGGAATAGGGGGGGCATT AAGTTGAGGACAACTCTACGTTATCAGGTACGGCAGCAGCACTTGTCGTC CTTATCCCTGGTTTATTTTAAGGGCACCATGTTTTTCAGAAGGTTGGTGC CTCGTCGAGAGGGGAGGCAGTACAGCGGCAGTCGGCATCCCTGGTTTATT GCTTTATTGATCGACACCCATGTTTTTCAGAAGCTTGGGGCCCCGCAGAG TTTAACAAAATAGGGGGGGGAGGAGAAGTTAAGGGTACTCCTTCCTTGTC TTGAGGACACTGTTGTTGAAGGAAAACAGTACGTTTGTGTGTATGCATGC ATACGTGCGTTCATTTAACGGTCGGGAGTAACGAATGTCAACTTGGAGGC TGTGTCGTGTCATTTTTCTTTTCGTCCCCACCGCCCAGCGATCGTAGACG CTTGTACTGTACCCCATTTGGTCCAGGGTCCATCGCTGAAACGCAAACGT GTTTTTTGTTTTTTGGCGAGGATTTAGGATCCCAGCCTCTCATGTTGTCA CCGGCAAGAGTTATCCTTATCTCCGGACCTTTGCCGTATATCCGCCCGCC GCTCACTTCCGTCTATCCGTCAAAACGCCACTTTGTAATTTTTGTTTGTT TTTCGTCGCAGTTCATCGCTGGCGCCGTGGAGCAGAGGATTTTCGACACC ATGCTGGCGAGAAACCCGGGGCTGAGCAGCCTCGCCTCGACGGCCGTGCG GTCGGCGAATCTCTACGTGGGGTCCCTGACCATCGTCGACTGGCTACGTT ACGTTGGGGTACAGCATTAAAGAGCACACCGTTGGTACCCCACGAATCAG CGGGGCCCCTTCCATCAGCGACTGCCTGTGATGGCTAGACGCGGTTCTGA TGGTTTATTCCACACGGCGGCGATAGTTTTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11608:1136..3119-

>mRNA_Ecto-sp9_F_contig11608.1352.1 ID=mRNA_Ecto-sp9_F_contig11608.1352.1|Name=mRNA_Ecto-sp9_F_contig11608.1352.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11608:1136..3119- (Ectocarpus species9 EcSCA_722f female)
ATGACGAAGCTGGCCATCGAGATGGTCACCGGCACTGCGGCTCAGTTCCT
GGCGGAGTACCAGAAGAGGGGCAAGAGGTTCATGCAGGAGCTCGACTTCG
TGGCAGCGGACACCTTGACGTGCCTCTTCGCCAACTTTGCCGCGGTGTGG
CTGTCGTGCCCCACCGTGGCCGTCAAGGCCGTGTGTAAGAAGGAGGCGGC
GAAGGCGGGCGGGACGTTGCAGATGACGAAGCTGGCCATCGAGATGGTCA
CCGGCACTGCGGCTCAGTTCCTGGCGGAGTACCAGAAGAGGGGCAAGAGG
TTCATGCAGGAGCTCGACTTCGTGGCAGCGGACACCTTGACGTGCCTCTT
CGCCAACTTTGCCGCGGTGTGGCTGTCGTGCCCCACCGTGGCCGTCAAGG
CCGTGTGTAAGAAGGAGGCGGCGAAGGCGGGCGGGACGTTGCAGAAATTC
CTGGCCGCGTGCCCTTCGAACGCGTTCCAAAAAGTGGTGGCAGAAGGAGG
GGTTTCTAAGACCTTCAGCGTCGCCGAGAGGGGAGCGGCCCTCCTGGTCC
CCATGCCCAAGCTCTTCGTGATCGGCTTCGGAGCCACGCTAGCGGGGTAC
GGCCTGATCGCCGGCCTGGAGACCTTCTCGGCCTGGAGAACCGCCGCCGC
CGCGGCACCGCCGGTGGTGGTAGGGAGGGGCGCCGCGAAATCGAAGAGGG
GTCTCAAGAGAGCGCAGAAGGCTCGGGCGGCGGCTCTTGCGGAAGAGGCG
CAGAAGCCCCCGGTGCCGGTGCTGGGGTCCGGGTTGGCGGTGGGGATGTT
CCTGGCCGTGTGGACGAATTTACGTTATCAGAAATTCCTGGCCGCGTGCC
CTTCGAACGCGTTCCAAAAAGTGGTGGCAGAAGGAGGGGTTTCTAAGACC
TTCAGCGTCGCCGAGAGGGGAGCGGCCCTCCTGGTCCCCATGCCCAAGCT
CTTCGTGATCGGCTTCGGAGCCACGCTAGCGGGGTACGGCCTGATCGCCG
GCCTGGAGACCTTCTCGGCCTGGAGAACCGCCGCCGCCGCGGCACCGCCG
GTGGTGGTAGGGAGGGGCGCCGCGAAATCGAAGAGGGGTCTCAAGAGAGC
GCAGAAGGCTCGGGCGGCGGCTCTTGCGGAAGAGGCGCAGAAGCCCCCGG
TGCCGGTGCTGGGGTCCGGGTTGGCGGTGGGGATGTTCCTGGCCGTGTGG
ACGAATTTACGTTATCAGTTCATCGCTGGCGCCGTGGAGCAGAGGATTTT
CGACACCATGCTGGCGAGAAACCCGGGGCTGAGCAGCCTCGCCTCGACGG
CCGTGCGGTCGGCGAATCTCTACGTGGGGTCCCTGACCATCGTCGACTGG
CTACGTTACGTTGGGGTACAGCATTAATTCATCGCTGGCGCCGTGGAGCA
GAGGATTTTCGACACCATGCTGGCGAGAAACCCGGGGCTGAGCAGCCTCG
CCTCGACGGCCGTGCGGTCGGCGAATCTCTACGTGGGGTCCCTGACCATC
GTCGACTGGCTACGTTACGTTGGGGTACAGCATTAA
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