mRNA_Ecto-sp9_F_contig1159.1339.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1159.1339.1
Unique NamemRNA_Ecto-sp9_F_contig1159.1339.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: Methyltransf_11 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYG4_9PHAE)

HSP 1 Score: 551 bits (1419), Expect = 2.610e-193
Identity = 268/277 (96.75%), Postives = 274/277 (98.92%), Query Frame = 1 
Query:   67 MLRSTFVVLLARNAVGFSPNLSSIVGVDGGMGARSSRNFVSATRPAGSTALFASGGVSAEEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPGRSDPMYIVEGRKKA 897
            MLRSTFVVLLARNAVGFSPNLSSIVG DGGMGAR+SRNFVSATRPAGSTALFASGGVSAE+VLKAPKWPEKWPFYEDDFSRMDES+DGDFYSQPRLVYHIDDSAVKALTKYY KALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNE+ELSKNVQLDEY+VKDLNV+AKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVS DISPNPGRSDPMYIVEGRKKA
Sbjct:    1 MLRSTFVVLLARNAVGFSPNLSSIVGFDGGMGARNSRNFVSATRPAGSTALFASGGVSAEDVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHIDDSAVKALTKYYTKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEFELSKNVQLDEYRVKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSHDISPNPGRSDPMYIVEGRKKA 277
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5I5_HETAK)

HSP 1 Score: 357 bits (916), Expect = 2.840e-117
Identity = 160/222 (72.07%), Postives = 190/222 (85.59%), Query Frame = 1 
Query:  229 GGVSAEEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPGRSDPMYIVEGRKK 894
            GG+ AE++LKAPKWP +WPF +DDF RMDE  D  FY   RLVYHIDD AV ALT++Y +  P+GADVLDICSSWVSHFP+ W+HG+R+G GMNEYELSKN QLD+Y V+DLNV  + P++D SFD+VTCVVSVDYLN+PL +F+E+RRVLRPGG+A+MSMSNRCFPTKAI IW QTND+EH+FIVGSYFHYAGGF+ P + DISPNPGRSDPMYIV+  KK
Sbjct:   44 GGIKAEDILKAPKWPAEWPFTKDDFKRMDEEEDTVFYQDARLVYHIDDPAVGALTRFYKETFPEGADVLDICSSWVSHFPEGWKHGRRSGTGMNEYELSKNPQLDDYFVRDLNVRPELPYEDESFDLVTCVVSVDYLNQPLAIFDEVRRVLRPGGRAVMSMSNRCFPTKAINIWLQTNDLEHLFIVGSYFHYAGGFNAPEALDISPNPGRSDPMYIVQATKK 265
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P5_9STRA)

HSP 1 Score: 325 bits (834), Expect = 6.200e-105
Identity = 151/217 (69.59%), Postives = 177/217 (81.57%), Query Frame = 1 
Query:  232 GVSAEEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPGRSDPMYIVE 882
            G+  E+VLK PKWPE++PF   DF R DES D +FY  PRLV HIDD+AVKALT+YY+K LP+GADVLDICSSWVSHFP++W+HGKR GLGMNEYELS+N QLDEY V+DLNV   FPF D+SFDV+TCVVS+DYL    +VF E  RVLRP GK I+SMSNRCFPTKA ++W  TND EH+FIVG++FHY+G F P  + DISPNP RSDPMYIVE
Sbjct:   48 GLGIEDVLKNPKWPEQYPFKPADFKRQDESVDTEFYEYPRLVLHIDDAAVKALTEYYSKTLPEGADVLDICSSWVSHFPQNWKHGKRVGLGMNEYELSQNKQLDEYVVRDLNVNPAFPFPDSSFDVITCVVSIDYLVTLDKVFAEAARVLRPNGKFIISMSNRCFPTKAWKLWLSTNDFEHVFIVGAFFHYSGAFQPAQAHDISPNPSRSDPMYIVE 264
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3G7_PHATC)

HSP 1 Score: 324 bits (830), Expect = 6.230e-105
Identity = 151/217 (69.59%), Postives = 174/217 (80.18%), Query Frame = 1 
Query:  244 EEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPGRSDPMYIVEGRKK 894
            E+VL+ PKWP +WP+  +DF+R DES D  FY  PRLVYHIDD+AV ALT+YYA+    G DVLDICSSWV H+P  W+ GK  GLGMNEYELS+N  LD Y VKDLN E   PFDDNSFD VTCVVSVDYLNKPLEVF EI RVLRPGG+ I+SMSNRCFPTKA +IW QT+D+EH+FI GS+FHYA  FDPP  +DISPNPGRSDP++IV+  KK
Sbjct:   12 EKVLQNPKWPPEWPYSAEDFARQDESDDELFYESPRLVYHIDDAAVGALTQYYAEEFKDGDDVLDICSSWVCHYPNQWKGGKVVGLGMNEYELSQNPVLDSYVVKDLNKEPTIPFDDNSFDKVTCVVSVDYLNKPLEVFQEIGRVLRPGGECILSMSNRCFPTKAFRIWLQTSDLEHVFIAGSFFHYAEKFDPPSGKDISPNPGRSDPLFIVKAAKK 228
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: Methyltransf_11 (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C942_THAPS)

HSP 1 Score: 319 bits (817), Expect = 4.710e-103
Identity = 150/219 (68.49%), Postives = 173/219 (79.00%), Query Frame = 1 
Query:  241 AEEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPGRSDPMYIVEGRKKA 897
            AE+VL  PK+P +WP+   DF R DES DG FY QPRLVYHIDDSAV ALT+YY  A  +G DVLDICSSWVSHFPK+W+ G   GLGMNEYELS+N QL  + VKDLN +  FPF D  FD VTCVVSVDYLN+P ++F EI RVLRPGG+ I+SMSNRCFPTKA +IW QTND+EHIFIVGS+FHYAG FD     DISPNPGRSDP++IV+  KK+
Sbjct:    5 AEKVLTNPKFPPQWPYSPSDFQRSDESDDGIFYDQPRLVYHIDDSAVSALTQYYTDAFNEGEDVLDICSSWVSHFPKEWKGGNVVGLGMNEYELSQNEQLSSFVVKDLNKDPTFPFGDEEFDKVTCVVSVDYLNQPEKIFKEIARVLRPGGECIISMSNRCFPTKAFRIWLQTNDLEHIFIVGSFFHYAGQFDAATCEDISPNPGRSDPLFIVKAAKKS 223
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ELA4_9STRA)

HSP 1 Score: 317 bits (813), Expect = 2.160e-102
Identity = 151/222 (68.02%), Postives = 182/222 (81.98%), Query Frame = 1 
Query:  232 GVSAEEVLKAPKWPEKWPFYED-DFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPGRSDPMYIVEGRKK 894
            G  AE+VL+ PK+P++WP+ +D DFSR DES D  FY  PRL YHIDD AV ALTKYY++ L +G DVLDICSSWVSH+PKD++ GK  GLGMNEYELS+N QL ++ VKDLN +  FPF+D+SFD VTCVVSVDYLNKPL+VF EI RVLRPGG+ ++SMSNRCFPTKA +IW QT+D+EHIFI GS+FHY+  FD P   DISPNPGRSDP+YIV+G +K
Sbjct:    6 GSMAEKVLENPKFPDEWPYSDDTDFSRQDESKDTIFYDTPRLCYHIDDDAVSALTKYYSENLKEGDDVLDICSSWVSHYPKDFKGGKVVGLGMNEYELSQNPQLTDFVVKDLNADPVFPFEDSSFDKVTCVVSVDYLNKPLQVFKEIGRVLRPGGECLISMSNRCFPTKAFKIWLQTSDLEHIFITGSFFHYSDLFDVPSCSDISPNPGRSDPLYIVKGVRK 227
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: Methyltransf_11 (domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JA50_GUITC)

HSP 1 Score: 316 bits (810), Expect = 6.540e-102
Identity = 151/226 (66.81%), Postives = 177/226 (78.32%), Query Frame = 1 
Query:  235 VSAEEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEH--GKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPG----RSDPMYIVEGRKK 894
            VS E+VLK PKWP+ WP+   DFSR DES D  FY  PRLVYHIDD A+ ALT YYAK +P+ +D+LDICSSWVSHFPKD+    GKR GLGMN++ELSKN QL E+ V++LN   KFPF DNSFDVVTCVVSVDYL KPLE+F E+ RVLRPGG+ I+S SNRCFP+KAI+IW  TND+EHIFI+GSYFHYAGGF+P  + DISP        SDPMYI++  KK
Sbjct:    3 VSVEDVLKNPKWPQSWPYSSKDFSRTDESEDEYFYDTPRLVYHIDDKAIAALTDYYAKTIPEKSDILDICSSWVSHFPKDFPQKMGKRVGLGMNQFELSKNEQLSEFVVQNLNKNPKFPFPDNSFDVVTCVVSVDYLIKPLEIFQEVSRVLRPGGRFIISQSNRCFPSKAIRIWLDTNDLEHIFIIGSYFHYAGGFNPAQAFDISPKKSIFSPPSDPMYIIQAEKK 228
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SKG7_9STRA)

HSP 1 Score: 313 bits (802), Expect = 6.580e-100
Identity = 146/216 (67.59%), Postives = 171/216 (79.17%), Query Frame = 1 
Query:  244 EEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPGRSDPMYIVEGRK 891
            E+VL+ PKWP  WP+ ++DFSRMDES D  FY  PRLVYHIDD AV ALT+YY + +  G DVLDICSSWVSH+PK ++ G   GLGMNEYELS+N QL  + VKDLN +  FPFDD+SFD VTCVVSVDYLNKP E+FNEI RVLRPGG  ++SMSNRCFPTKA +IW  TND+EHIFIVGS+F Y G F PP   DISPNPGRSDP++I++  K
Sbjct:   68 EKVLQNPKWPPSWPYSDEDFSRMDESDDSVFYESPRLVYHIDDPAVGALTEYYKENIKDGEDVLDICSSWVSHYPKHFKGGNVVGLGMNEYELSQNKQLSSFVVKDLNEDPVFPFDDSSFDKVTCVVSVDYLNKPKEIFNEIGRVLRPGGTCLLSMSNRCFPTKAFRIWLNTNDLEHIFIVGSFFQYTGLFGPPSCDDISPNPGRSDPLFIIKATK 283
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: Methyltransf_11 (domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF71_FISSO)

HSP 1 Score: 311 bits (798), Expect = 1.380e-99
Identity = 152/228 (66.67%), Postives = 186/228 (81.58%), Query Frame = 1 
Query:  220 FASGGVSAEEVLKAPKWPEKWPFYED--DFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPGRSDPMYIVEGRKKA 897
            F++ G+ AE+VL  PKWP  WP Y+D  DF+ MD S D  FYSQPRLVYHIDD+AV ALT++YA +L +G DVLDICSSWVSH+PK+++ GK  GLGMNE+ELSKN QL +Y V++LN   KFPFDD SFD VTCVVS+DYL +PLEV  EI RVLRPGG+AI+S+SNRCFPTKA+QIW QT+D+EHIFIVGS+FHYAG FDPP   D SPNPGRSDP++I+  ++ +
Sbjct:   39 FSTKGM-AEKVLANPKWPASWP-YDDKVDFAVMDPSEDEIFYSQPRLVYHIDDAAVLALTEHYATSLEEGDDVLDICSSWVSHYPKNFKGGKVVGLGMNEFELSKNPQLTDYVVQNLNKNPKFPFDDASFDKVTCVVSIDYLTQPLEVVKEIGRVLRPGGEAIISISNRCFPTKAMQIWLQTSDLEHIFIVGSFFHYAGCFDPPKCTDASPNPGRSDPLFIITAKRSS 264
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Match: Hypothetical (protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E449_9CRYP)

HSP 1 Score: 312 bits (800), Expect = 2.030e-99
Identity = 148/226 (65.49%), Postives = 177/226 (78.32%), Query Frame = 1 
Query:  235 VSAEEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHIDDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEH--GKRTGLGMNEYELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSRDISPNPG----RSDPMYIVEGRKK 894
            +S E+VLK PKWPE WP+   DFSR DES D  FY  PRLVYHIDD A+ ALT+YY K +P+ +D+LDICSSWVSHFPKD+    GKR GLGMNE+ELSKN QL E+ V++LN   KFPF DNSFDVVTCVVSVDYL +PL++F E+ RVLRPGG+ I+S SNRCFP+KAI+IW  TND+EHIFI+GSYFHYAGGF+P  + DI+P        SDPMYI++  KK
Sbjct:   70 ISVEDVLKNPKWPESWPYSPRDFSRTDESEDEYFYDTPRLVYHIDDKAIGALTEYYGKTIPEKSDILDICSSWVSHFPKDFPQKMGKRVGLGMNEFELSKNEQLSEFVVQNLNKNTKFPFPDNSFDVVTCVVSVDYLIQPLQIFQEVARVLRPGGRFIVSQSNRCFPSKAIRIWLDTNDLEHIFIIGSYFHYAGGFNPAQAFDITPKRSIFSPPSDPMYIIQAEKK 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1159.1339.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Methyltransf_112.610e-19396.75domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical2.840e-11772.07protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
S-adenosyl-L-methionine-dependent6.200e-10569.59methyltransferase n=1 Tax=Tribonema minus TaxID=30... [more]
Predicted6.230e-10569.59protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Methyltransf_114.710e-10368.49domain-containing protein n=1 Tax=Thalassiosira ps... [more]
S-adenosyl-L-methionine-dependent2.160e-10268.02methyltransferase n=1 Tax=Fragilariopsis cylindrus... [more]
Methyltransf_116.540e-10266.81domain-containing protein n=1 Tax=Guillardia theta... [more]
Hypothetical6.580e-10067.59protein n=1 Tax=Eucampia antarctica TaxID=49252 Re... [more]
Methyltransf_111.380e-9966.67domain-containing protein n=2 Tax=Fistulifera sola... [more]
Hypothetical2.030e-9965.49protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1159contigEcto-sp9_F_contig1159:12385..18857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score560.5
Seed ortholog evalue4.5e-157
Seed eggNOG ortholog2880.D7FVV9
EggNOG free text desc.Methyltransferase domain
EggNOG OGs28JTZ@1,2QS7X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-01_002330.1
Exons7
Model size1706
Cds size834
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928415.304607-UTR-Ecto-sp9_F_contig1159:12384..124501622928415.304607-UTR-Ecto-sp9_F_contig1159:12384..12450Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1159 12385..12450 +
1692277863.2248747-UTR-Ecto-sp9_F_contig1159:12384..124501692277863.2248747-UTR-Ecto-sp9_F_contig1159:12384..12450Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1159 12385..12450 +
1622928415.6308808-UTR-Ecto-sp9_F_contig1159:18051..188571622928415.6308808-UTR-Ecto-sp9_F_contig1159:18051..18857Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1159 18052..18857 +
1692277863.3068848-UTR-Ecto-sp9_F_contig1159:18051..188571692277863.3068848-UTR-Ecto-sp9_F_contig1159:18051..18857Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1159 18052..18857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928415.3503144-CDS-Ecto-sp9_F_contig1159:12450..126141622928415.3503144-CDS-Ecto-sp9_F_contig1159:12450..12614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 12451..12614 +
1692277863.2393184-CDS-Ecto-sp9_F_contig1159:12450..126141692277863.2393184-CDS-Ecto-sp9_F_contig1159:12450..12614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 12451..12614 +
1622928415.3713608-CDS-Ecto-sp9_F_contig1159:14404..145411622928415.3713608-CDS-Ecto-sp9_F_contig1159:14404..14541Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 14405..14541 +
1692277863.2490518-CDS-Ecto-sp9_F_contig1159:14404..145411692277863.2490518-CDS-Ecto-sp9_F_contig1159:14404..14541Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 14405..14541 +
1622928415.3854575-CDS-Ecto-sp9_F_contig1159:15109..152391622928415.3854575-CDS-Ecto-sp9_F_contig1159:15109..15239Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 15110..15239 +
1692277863.2620704-CDS-Ecto-sp9_F_contig1159:15109..152391692277863.2620704-CDS-Ecto-sp9_F_contig1159:15109..15239Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 15110..15239 +
1622928415.5566838-CDS-Ecto-sp9_F_contig1159:16196..163261622928415.5566838-CDS-Ecto-sp9_F_contig1159:16196..16326Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 16197..16326 +
1692277863.2699225-CDS-Ecto-sp9_F_contig1159:16196..163261692277863.2699225-CDS-Ecto-sp9_F_contig1159:16196..16326Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 16197..16326 +
1622928415.574549-CDS-Ecto-sp9_F_contig1159:16723..168151622928415.574549-CDS-Ecto-sp9_F_contig1159:16723..16815Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 16724..16815 +
1692277863.2785058-CDS-Ecto-sp9_F_contig1159:16723..168151692277863.2785058-CDS-Ecto-sp9_F_contig1159:16723..16815Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 16724..16815 +
1622928415.599196-CDS-Ecto-sp9_F_contig1159:17385..174531622928415.599196-CDS-Ecto-sp9_F_contig1159:17385..17453Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 17386..17453 +
1692277863.2876382-CDS-Ecto-sp9_F_contig1159:17385..174531692277863.2876382-CDS-Ecto-sp9_F_contig1159:17385..17453Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 17386..17453 +
1622928415.6178741-CDS-Ecto-sp9_F_contig1159:17938..180511622928415.6178741-CDS-Ecto-sp9_F_contig1159:17938..18051Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 17939..18051 +
1692277863.296961-CDS-Ecto-sp9_F_contig1159:17938..180511692277863.296961-CDS-Ecto-sp9_F_contig1159:17938..18051Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 17939..18051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1159.1339.1prot_Ecto-sp9_F_contig1159.1339.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1159 12451..18051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1159.1339.1

>prot_Ecto-sp9_F_contig1159.1339.1 ID=prot_Ecto-sp9_F_contig1159.1339.1|Name=mRNA_Ecto-sp9_F_contig1159.1339.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=278bp
MLRSTFVVLLARNAVGFSPNLSSIVGVDGGMGARSSRNFVSATRPAGSTA
LFASGGVSAEEVLKAPKWPEKWPFYEDDFSRMDESTDGDFYSQPRLVYHI
DDSAVKALTKYYAKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEY
ELSKNVQLDEYKVKDLNVEAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNE
IRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGF
DPPVSRDISPNPGRSDPMYIVEGRKKA*
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mRNA from alignment at Ecto-sp9_F_contig1159:12385..18857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1159.1339.1 ID=mRNA_Ecto-sp9_F_contig1159.1339.1|Name=mRNA_Ecto-sp9_F_contig1159.1339.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6473bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1159:12385..18857+ (Ectocarpus species9 EcSCA_722f female)
GTGCTTTACGTGCGTCTGGCAGCTGGTGGGTTTGCGCTGCTTTCTCTCGC
TCGCACTCTCTCTACCATGCTTCGCTCTACCTTCGTAGTCCTCCTCGCTA
GGAACGCGGTGGGTTTCTCGCCGAATCTGTCAAGCATTGTCGGCGTTGAC
GGCGGGATGGGAGCCAGAAGTAGCAGGAATTTCGTCAGCGCAACTCGGCC
TGCTGGATCTACCGCGCTGTTCGCCTCAGGGTAAGCACGAAGGTCGCCCG
CGCGATTGCTTTGCCTACTCGTCAGTACGTTGAGGATGAAGTGGAGTGTA
TCATTGGTTCTACTGCTGTGGTGTGTGGTGTGCACGTAGGTGGGAAATGG
GCACACACTTAGCACCCAATAGTTTGAATCCTCTGGTGTGTTTCCAGCTT
CCTGCTCTGACTACCCCCCCCACTTTGTGACACGACCCGTTGTGCTTGCT
GCTGTGCGCGGCTGCAGCCCTTGATCTCTCTATGCATACGCCGGTTTACG
TAATGCCGAAGGCCGCCACACTGGTGGGTTCCATTGCGTCCTGAAGTGCT
TTACGCCCAACTCGACCGCAGTGCTTCATCCAAAAAGCCTAGTCAGGAGG
TCCTCCCGAAGTTGACGGCTCTCACCTTTGTGCAACCGCACCCCGCCACT
GCTGTGCATGCTGCAATACTGCTTTAGGTATCCGGCGTACTACAGTAGTT
GTGCTGTAAGATAGCCGTTCACGAAGTTTTGGAACTGGCATAACAAACCC
ACGCCACCCTTATTTTATTCTGTGATCAACCCGCCAATTGCGTCGTAAAC
AAGCCGTTGCATGTACAGCTGCTGCCCAATCCCATGATCCCGTTACCAAT
CTGTGTACAGTCAATCGTGTGGTCTACAGCATGCATAGTTTCCGTGGTGC
AGCAGTACCTCCGACACGGCAGCCCGTAATCTGCACTACTACCACCTTTT
GCGTGCTTCTCCCTCCATAACAACAACTGTGTGCGCTGCGTATGTAAATG
CATGAGCGCAGCCCAGAGCACCACATGCTCCTGGTACATTTCGCGTGGGT
CCCTTGCCTCTCGCTTGTCGTGCTCCACTGTTCGAGGGCCTAAATAAATA
GCAGTACGTATTTAGAAGTATGATATGTCAGACAAGAACACGCTAACTGT
CGTCAGCGCTGACTACTTTGGTCTACTCAAGGGGATAACCCCATACCTAA
CATCTCCCCTTCTGACACTTCCGCCACACGCTCCTCTCCACGGGAAAACG
CCTCTGGCACGATCGGAAGGGGGGTGATTTCCTGGAAAATCCGGTGTTCA
ACCCGTCCGCGCTGATTTTTACCTGAAGCAATACTGTAATGGTATGCACA
GATTTGGCGGAATCTCTTCCGTTCGCCCCACACTACTTCGTCCTTTGTCA
AACTACAGGCGGTGTTGTCGGCATCCTTCGCTTCCTCCCCTCCCCTCGGC
AACATGTCACGCCTGAAACACGTCATGCCTGACCTACCGTAGACTGATGG
GAACGCTTCACTTCCTTTGTTCCTTGCCAAATACATACATGCATGCAGTC
ACCTTGGACGCAACATCAGACAGTTCAAACGCCCTCTACTACCTTGCGAT
TCCTTCCCCCCATCGACATTACACAAAAACGGTTGCGGATGACAGCGGAT
GGTGTGCGTGGGCTACTAAGAAAATGCTTCCGTGAACGCACACGGGGGGG
GGGGAAACGATACCGTCTCCTCAGCGTTTGTATAATAATCCTATGCATAG
GTTCACCAAGAGGTAAGCAAGCGCGGGGGCGGGATTCAGTCACGAAAGAT
GACAGGCACGACCGCAAGGAGGGCGTGCACACACACTGTCAGGTTAAAGC
AGCAATCCCCTAGACCAAAGCAGTAGTCATGGCCACAGCTGACAACTTTG
CCCTGTGCGACCCATCAAACAGCAACGTGTTGTTCGGGGCTCGACTCCCA
CACCACCTTTCTCCGCCAACATCATCCCAACTCTTTTTTGTTTTTGCCCT
GGTGCCACGCGATTTCGTAGAGGGGTGTCCGCAGAGGAGGTGCTGAAGGC
ACCCAAGTGGCCGGAGAAGTGGCCCTTCTATGAGGACGACTTCAGTCGCA
TGGACGAGTCCACCGACGGGGATTTCTACTCGCAGCCGCGGCTCGTGTAC
CACATCGGTACGCATCTTTCCTTGTGTTTTTTTGTTTTCTGTTTTTGGAA
TGAATCAAACTACAGACATGTTGACGGTCAGCATGTTTTTTTCTTTCCTT
TCGTTTTTTTCTGCGGTATGCCATAAATCAGGCAGCGATGTTGTCGACGC
ACATCGGTCATTTTTTTTTTTACCGTTGTTTGTCCCTGCTGTACATGCGG
TAAATCAACCCAGCGATGTTGTTGAAGCACATGGCGTCGGTTTCCTTGTC
TGTGGAAAATAAGCCACAGCACAGAGAGGCTCTGTTGTTGTACAGACGGT
GTTCTCTCTTTCCTGCTTGGAAGGAGTGGTGTAGAGTAGCTCCCTGTTGT
AAATGTTAGTTTTTCATCGCTTGGTTCGTTTTTTTTGTTCTGTGCGTGCA
GAGTCCCCGCCGAGCCAGCATGGTTTGATTGGGAGGGAGGAAGGAAACAT
CCTGTTTTGTGGTCGTTATCTTTCTTTGGCATATGCATATGTAACCCCCT
AGAATATTTGTGCTCTGCGACTCTGTACTGATGCTGCTGTGAACCATTGT
TGGTATTGAACGCCTGTTTTTCAAGACGATTCCGCGGTGAAGGCGTTGAC
GAAGTACTACGCCAAGGCGTTGCCCAAGGGGGCGGACGTGCTGGACATCT
GCTCGTCGTGGGTGAGCCATTTCCCGAAGGACTGGGAGCACGGCAAGCGC
ACCGGGTGGGTCTGGATTGCTCTGTACTCTCTAGGATTGCTTGAATAGTC
GAGTTTATCGTTTCTCCGCTTCCGACATGGGACATCGGACGATTTTCGAG
ACGCGCACAGGGTGGGGTGCGATTGTTCTAGGATACCCTAAATATACGTT
GCTTAACCCTTTAAAGATGCCAGTTAGCTACAGGTTGCAGGTCCAGACGA
TGATCCCGCTCCTTGGGAGAGGCTATACAGACCCGAGGAACGAAGACTGA
CATGGCTTTGACGTAAACGTATCCCCAAATACACTGGGGACACTTTCCAT
ATACTGAAGCCAAGACAGCAAATTTATCCGGTCCTATGCACAGGCTATGC
AGACTTAAATGTACAGGAAGGGGACACGCGGCTTGGGAGACACCTTTACA
GCAAGTCAGAGGCCGAGAAGAGGCACACAGACATCACAAAGCGTACCACC
TCACTCAAGCATGGTAGTCCAAGGTTTTCCACGGGCGTTTCACACAACGG
AGCGTAGTGACGACCGCGGTGGGGGACCGCGGTGCGGTAAACAAACGTTT
AAGAGCCTTTTCCCCAAAGCGTCCCCATTCGGGCTTCCAGTACTATAATG
GTAAGTAGTCGAGGTCACTGTTTCTCCTCTTGGCTTTTCGGATGATTTTC
GACACTGTTGAGTGCTTGCACCTTGCACATGCCTGCGTGTTTGGCCCGGG
GGACCCTCAACTGTTCTTTTCGGCGCGGGCCCAATATGCTTCCGTAATGC
CTCTGCGAAATATTGAACAACCATTTGCCTCACTTCCACGGCTCTCCGAG
CACTAGACTGCTTTTGACCGTATCACTCTTGACTAGCACCACACCCGCCC
AATCTCGAAAGAAAAAACGCCGTACAACCTCGAGGGAACCCCCGAACATG
GACCAACCGGCCAGCACTCACTTCCTGCCCACTCCGTACGACGCCCGAAC
GCCGAAAATAAGCCTGGGGATGAACGAGTACGAGCTGAGCAAGAACGTGC
AGCTGGACGAGTACAAGGTTAAGGACCTCAACGTTGAGGCGAAGTTTCCG
TTTGACGACAACTCCTTCGACGTCGTGACGTGCGTCGTGTCGGTGAGATG
CCCTTGTGATTTTTTCTGTCTAGTCTGTTCTGTCTGTCTGTCTGTCTGTC
TGTCCTCTGTGGTTCTGTTGCATGCATTCCTTCGTACTATTCCGCGTTCC
CGTTCTTCGATATTTTCTTGTCTTTTCGCGTCGTTTTTTGTTCGTCCCGG
TTTGTCGTTGTGGCTGGTGTATTGGTGAGGAGCAGCTAGCGGTTGGTTTC
AGCACCAAACAAGAACACTTGCTTAGTTACCACGAGCGCATCCCGCCCCG
TGCAGTGTTGCGGGGGATGCTGGGTGCGGAACGACAAGTGTATCGATGTT
TCGGTATCCTATGTACACACACAGGGTATTATGTTTCTTCCCCCGATTAT
GATATATTTCCCCCTGGTCGACGCCATTTACACGTGAAGGTGGACTACTT
GAACAAGCCGCTGGAGGTCTTCAACGAGATCCGACGAGTGCTGAGACCAG
GCGGCAAGGCCATCATGTCCATGTCCAACAGGTAACCGCGAGGGTGGTCT
TTTTTTTTCCCACGTGTATTCGCCTAATCCTTGTTTGTGCACATGTTGTA
CGTTAACCACTCAACCAGTCCACGACAAGCTCGTTCTGTCACCAGTCGTG
CCCGTGTCCGACAAGTGGTGGTACTACGTCACGGCCGTTACCTTCCAACT
AGGTTGTTTGTTTGGTCGAACGCCATATTTTCCAGCTCGCGACGTTGTAG
CTCTCGAGGGAAGAAAGTGTCTTGTTGAGAAAAACGCCGCTGATGGGGAT
GGGGGGCTTCCGGGAGAGTAGAATGATGAGTTCTTGTGCTCGGCCCCTGG
ATCGAAACTACGGTCAGCATTGACGAGACGAAAGAACGGGGCGATCGCAA
AGAAACTTGGTTTCACCGGGAAAATGCGAGTCAATGGAAAACAGGAGAAC
TGCTTCACTGGTTGTATTTGTGATCTGCGACTACTTCTCCCGAGGCTTTT
GAGACCACTAAACGGCCCACACCGTGAACTACCCAACGCTTCAAGTTTCA
CTAAACTCCGCCCAAACAAATGAAACGGCAACCCGCTCGGAACGGACGCA
GATGTTTCCCGACGAAGGCGATCCAGATCTGGAACCAGACTAACGACATG
GAGCACATCTTCATCGTCGGCAAGTTATCGTCGTTGTTGTTCCTGTTGTT
CCTGTTATTCCTGTTGTTCCTGTTGTTCCTGTTGTTGTTGATGTTGTTGA
TGTTGTTGTTGTCGTGGTTGTTGTCGTCGTCGTTGTTGTTGTACTCGTTG
GTTGTTGTTGCTGGCGCACCGCTCGGTTTCGTGTGGTGTGTAGAACGAGA
TACTGTCGACATTGACTCATTTATCCCTCACTCACTACTAATAATACACA
CCCCGATAGTACCTGCGAAGGAGCTCTCGTGTTCCCCTCTAGAAACCGAC
TTTACCCACCCTCCCTCTTCTCGCTCCCGTTCCGATGGGATCGTAAATCC
ACTAGAATGAGATGTACTCTGAGGTTGACCCATGTATCCCTCAGGCACTA
CACACCCCGACGTCACTGTCAGGAACTGTTGCAGTAGTCTATCGTATTCC
CCTCTCGTAACCGTCTCTACCCCCCGCTCCCCCTTGTTGCCGCCTATCCG
TTAGGATCGTACTTCCACTACGCGGGAGGCTTCGACCCGCCGGTCTCGCG
CGACATCTCGCCAAACCCGGGGCGATCGGACCCCATGTACATCGTAGAGG
GCAGAAAAAAGGCGTAAGCGCTCACACGGGCATAGCACAAACGTTATGAG
ACAGCTATAATAGCTACTGCACACCAGAAGAGCTAGAGTGCGGATCTTGG
TCGAAAAATGAAGTGCGATGTTGTCGGAGGCGAGCGTCGGGGGCATGGAT
GCGTGTTTTCCGGCTTTTTTCTATCGAAGAAGAGAGCCCTGCCGATATTT
CGGCAGCGAGAACCTTGCTTTTTGGGTTAGATTTTGTAAAGATTTTGGGA
TATCAGGAATCTCGGGGGACAAACTCCTTGTCCCGATTTGTGTAGAAGCG
GAACAGTTTTGGTGTTGTGGAGTGGAGGTGGGAGAGGGAGTAAGTGCCCG
CGGGACTCTTTCGCACCTGTCGAAAAACCTTCGTCATGCGTAATGAATAC
TAGGGGGAACGATTGGCCCCCCGCCTCCCAGTAGGGCGGGCGGCCACCAT
GCGTTGTTTTATTGTTGTTGTTGTTTCTCACATTAGGTCTATAGTCCACA
AAAATGGGGAGCCCGTGGTCGCAAAACCCCGGCACATACGGGTTGTATGT
GTGTTCAAAAGAAAGGGAGACATAGACTATATGGGTCATGATGTAAGTGC
CGGCCAAAAAGAAAATATTTTCTCATCTCGTACTATTTTTCCTCAACCAT
CGAGGAACGGCTGTGAAAGTGAGAGTAGATTGAGCACGTGGGATCCTACG
ATCTCTCGTCACCTTAGCTCTGCGTCTATCACCATGTGCCTGCCTCCGAC
ACTACATAGTTTGTGCCCCCATGTTTTTCACTCCGACTAGCGTTTGAAAC
TCGAATGAAATGCGCTCCTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1159:12385..18857+

>mRNA_Ecto-sp9_F_contig1159.1339.1 ID=mRNA_Ecto-sp9_F_contig1159.1339.1|Name=mRNA_Ecto-sp9_F_contig1159.1339.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1668bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1159:12385..18857+ (Ectocarpus species9 EcSCA_722f female)
ATGCTTCGCTCTACCTTCGTAGTCCTCCTCGCTAGGAACGCGGTGGGTTT
CTCGCCGAATCTGTCAAGCATTGTCGGCGTTGACGGCGGGATGGGAGCCA
GAAGTAGCAGGAATTTCGTCAGCGCAACTCGGCCTGCTGGATCTACCGCG
CTGTTCGCCTCAGGATGCTTCGCTCTACCTTCGTAGTCCTCCTCGCTAGG
AACGCGGTGGGTTTCTCGCCGAATCTGTCAAGCATTGTCGGCGTTGACGG
CGGGATGGGAGCCAGAAGTAGCAGGAATTTCGTCAGCGCAACTCGGCCTG
CTGGATCTACCGCGCTGTTCGCCTCAGGAGGGGTGTCCGCAGAGGAGGTG
CTGAAGGCACCCAAGTGGCCGGAGAAGTGGCCCTTCTATGAGGACGACTT
CAGTCGCATGGACGAGTCCACCGACGGGGATTTCTACTCGCAGCCGCGGC
TCGTGTACCACATCGAGGGGTGTCCGCAGAGGAGGTGCTGAAGGCACCCA
AGTGGCCGGAGAAGTGGCCCTTCTATGAGGACGACTTCAGTCGCATGGAC
GAGTCCACCGACGGGGATTTCTACTCGCAGCCGCGGCTCGTGTACCACAT
CGACGATTCCGCGGTGAAGGCGTTGACGAAGTACTACGCCAAGGCGTTGC
CCAAGGGGGCGGACGTGCTGGACATCTGCTCGTCGTGGGTGAGCCATTTC
CCGAAGGACTGGGAGCACGGCAAGCGCACCGGACGATTCCGCGGTGAAGG
CGTTGACGAAGTACTACGCCAAGGCGTTGCCCAAGGGGGCGGACGTGCTG
GACATCTGCTCGTCGTGGGTGAGCCATTTCCCGAAGGACTGGGAGCACGG
CAAGCGCACCGGCCTGGGGATGAACGAGTACGAGCTGAGCAAGAACGTGC
AGCTGGACGAGTACAAGGTTAAGGACCTCAACGTTGAGGCGAAGTTTCCG
TTTGACGACAACTCCTTCGACGTCGTGACGTGCGTCGTGTCGCCTGGGGA
TGAACGAGTACGAGCTGAGCAAGAACGTGCAGCTGGACGAGTACAAGGTT
AAGGACCTCAACGTTGAGGCGAAGTTTCCGTTTGACGACAACTCCTTCGA
CGTCGTGACGTGCGTCGTGTCGGTGGACTACTTGAACAAGCCGCTGGAGG
TCTTCAACGAGATCCGACGAGTGCTGAGACCAGGCGGCAAGGCCATCATG
TCCATGTCCAACAGGTGGACTACTTGAACAAGCCGCTGGAGGTCTTCAAC
GAGATCCGACGAGTGCTGAGACCAGGCGGCAAGGCCATCATGTCCATGTC
CAACAGATGTTTCCCGACGAAGGCGATCCAGATCTGGAACCAGACTAACG
ACATGGAGCACATCTTCATCGTCGATGTTTCCCGACGAAGGCGATCCAGA
TCTGGAACCAGACTAACGACATGGAGCACATCTTCATCGTCGGATCGTAC
TTCCACTACGCGGGAGGCTTCGACCCGCCGGTCTCGCGCGACATCTCGCC
AAACCCGGGGCGATCGGACCCCATGTACATCGTAGAGGGCAGAAAAAAGG
CGTAAGATCGTACTTCCACTACGCGGGAGGCTTCGACCCGCCGGTCTCGC
GCGACATCTCGCCAAACCCGGGGCGATCGGACCCCATGTACATCGTAGAG
GGCAGAAAAAAGGCGTAA
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