mRNA_Ecto-sp9_F_contig1159.1337.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV7_ECTSI) HSP 1 Score: 255 bits (651), Expect = 4.290e-76 Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 1
Query: 1 EEIPDGLAETAEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAAAKPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEHNE 390
EEIPDGLAETAEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAA KPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEHNE
Sbjct: 82 EEIPDGLAETAEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAATKPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEHNE 211
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8V2_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.030e-30 Identity = 65/131 (49.62%), Postives = 89/131 (67.94%), Query Frame = 1
Query: 10 PDGLAETAEDLVSASVMNHPDS------DYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAAAKPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEH 384
PDGL ETA DL S +++H D D R LVACCLV++LR++AP APY +++ + +L+ QLRGL + A + RT T+++L+SLA+CKSCVI+ LA E V GG + LV+ FE LLTG+R EH
Sbjct: 42 PDGLRETAADLASPELLSHKDRQGFTIMDVRQLVACCLVDILRVYAPQAPYKPEELQSIFALLTQQLRGL-SQAVDANDPRTARTHYILQSLASCKSCVILVDLARERVEGGEDALVDFFECLLTGIRAEH 171
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB1_9PHAE) HSP 1 Score: 104 bits (259), Expect = 2.640e-23 Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1
Query: 232 RTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEHNE 390
R LTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEHNE
Sbjct: 27 RQHLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEHNE 79
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2API7_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 6.070e-22 Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 55 VMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTA-AAKPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEHNEVRQSY 405
++NH D D RL+ AC L ++LRIFAP+APY + +L SL + QL GL T A+ TR Y +LESLA SC+I+ L +G G + E+ E LL+ +RPEH + QS+
Sbjct: 4 LLNHSDKDVRLITACILADILRIFAPEAPYVSEHLLEIFSLFVKQLHGLSTDFRAEANTGGTRCAY-ILESLATVNSCIILTELMQQGHHGAEDITNELCECLLSSIRPEHPKSVQSH 120
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL83_9ARCH) HSP 1 Score: 94.4 bits (233), Expect = 2.790e-21 Identity = 47/119 (39.50%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 34 EDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAAAKPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEHNE 390
++LV+ +M+H D + RLL+ CCL EVLRI+AP+APY ++ L+I Q+RGL T P+ + + +L SLA KSCV+ +L +GV E + +FEV++ +RP+ E
Sbjct: 55 KELVANELMSHSDKEVRLLLGCCLTEVLRIYAPEAPYPLPDMIRVFQLLIAQIRGLETH--DPKSSQGSMMLAILHSLAKVKSCVVPIMLLQQGVDEAQEVVTSLFEVMVNILRPDSTE 171
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Sister (chromatid cohesion protein pds5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFJ9_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.850e-18 Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 10 PDGLAETAEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAAAKPREERTRLTY------HLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEH 384
P GL + + L S+ +++H D D RL AC L E+LRI+AP+AP++ +L +LI QLR L + K + + +LL SLA KSC+I++ L + +P E+LV+ F LL VR +H
Sbjct: 50 PTGLEGSTKALGSSRILDHTDKDVRLYTACALAEILRIYAPEAPFSSPVLLQGFALITAQLRSLVSVPGKQAQAAAACGHKPVPVLYLLHSLATVKSCIILSELVQQDLPRAEEELVDFFSCLLGSVREDH 180
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHZ8_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.420e-17 Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1
Query: 7 IPDGLAETAEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRG-----LGTAAAKPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPEH 384
+P GL + A+ L + + H D RLLVAC L EVLRI+APDAP+ + + L L G G E++ L HLL SLA KS VI+ L G P EQL EVLL+ RPEH
Sbjct: 90 LPRGLKKLAQALATPVYLKHKQRDVRLLVACALAEVLRIYAPDAPFASKDLQSIFGLFSQSLSGGLPNLAGATGEASLEDKCVL--HLLHSLAEVKSAVILVELFQAGAPNAEEQLRGFVEVLLSAARPEH 218
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Armadillo-type (protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PI28_9FUNG) HSP 1 Score: 83.2 bits (204), Expect = 6.650e-16 Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 1
Query: 13 DGLAETAEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAAAKPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPE 381
D LA+ +DLV+ ++ H D R LVACC+ ++LR++APDAPY D ++ II QL+ L + ++LLESL+ KS V++A L+N E + ++F V +RPE
Sbjct: 55 DSLADVTKDLVNPTLREHSDKGVRALVACCIADLLRLYAPDAPYNDRELREIFEFIILQLQNL----SHTNSPHFSFHFYLLESLSTVKSIVLIADLSNSN-----ELIADLFRVFFEIIRPE 168
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Uncharacterized (protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0STY6_ALLM3) HSP 1 Score: 78.2 bits (191), Expect = 3.490e-14 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 31 AEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAAAKPREERTRLTY-HLLESLANCKSCVI 291
A+DLV+ S++NH D R+LVACCL E+LRI+APDAPY DDQ+ A L Q+R +G ++ Y HLL SLA +S +
Sbjct: 57 AKDLVAPSLLNHRDRGVRILVACCLAEILRIYAPDAPYEDDQIKAIFELFALQMRAIGNV-----DDAYHAYYAHLLTSLAVIRSITL 139
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Match: Armadillo-type (protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GT92_9FUNG) HSP 1 Score: 77.4 bits (189), Expect = 6.890e-14 Identity = 38/121 (31.40%), Postives = 69/121 (57.02%), Query Frame = 1
Query: 19 LAETAEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDDQVLATLSLIITQLRGLGTAAAKPREERTRLTYHLLESLANCKSCVIVALLANEGVPGGLEQLVEMFEVLLTGVRPE 381
L+ + L + ++NH D R+ ACC+ ++LR++APDAPYT++ + A L + +LR + T ++ + Y+LLESL+ KS V++ L N + ++++F + VRP+
Sbjct: 45 LSSVTKQLADSPLINHKDKGVRIYTACCIADMLRLYAPDAPYTNNTLKAIFELFVNELRNIATTSSP----YFGMYYYLLESLSAVKSIVLITQLRN-----AKDLMIDLFRGIFDSVRPQ 156 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1159.1337.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1159.1337.1 >prot_Ecto-sp9_F_contig1159.1337.1 ID=prot_Ecto-sp9_F_contig1159.1337.1|Name=mRNA_Ecto-sp9_F_contig1159.1337.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=136bp EEIPDGLAETAEDLVSASVMNHPDSDYRLLVACCLVEVLRIFAPDAPYTDback to top mRNA from alignment at Ecto-sp9_F_contig1159:3670..5703- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1159.1337.1 ID=mRNA_Ecto-sp9_F_contig1159.1337.1|Name=mRNA_Ecto-sp9_F_contig1159.1337.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2034bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1159:3670..5703- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1159:3670..5703- >mRNA_Ecto-sp9_F_contig1159.1337.1 ID=mRNA_Ecto-sp9_F_contig1159.1337.1|Name=mRNA_Ecto-sp9_F_contig1159.1337.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1159:3670..5703- (Ectocarpus species9 EcSCA_722f female)back to top |