mRNA_Ecto-sp9_F_contig1159.1336.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB1_9PHAE) HSP 1 Score: 164 bits (414), Expect = 4.490e-45 Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1
Query: 13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKP+IWASFLGRFIDA
Sbjct: 154 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPAIWASFLGRFIDA 235
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV7_ECTSI) HSP 1 Score: 162 bits (410), Expect = 1.550e-44 Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1
Query: 13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYG EKP+IWASFLGRFIDA
Sbjct: 286 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGAEKPAIWASFLGRFIDA 367
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJE0_PHYRM) HSP 1 Score: 86.7 bits (213), Expect = 6.130e-18 Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
G SELKEHV L++E+HKVTP++L ++LP V QL+ ++V RS A AL+G+LF+S RA+YG + + FLGRF DA
Sbjct: 325 GSQQASELKEHVYTLIYEVHKVTPSLLLYVLPNVCLQLQVDEVATRSDAIALMGKLFASSRADYGSQYMKNFRDFLGRFRDA 406
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Sister (chromatid cohesion protein pds5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFJ9_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.390e-18 Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFID 255
G + +EHV PL++ELHKV PN + +I P VA QL AED VR+ A AL GRLF++ A+YG E P I+ FLGRF D
Sbjct: 256 GCGVSEIEEEHVHPLIYELHKVNPNFMLYIFPNVATQLAAEDTAVRARAVALFGRLFAALHADYGNEYPRIFREFLGRFKD 336
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Sister (chromatid cohesion protein PDS5 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWJ1_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 5.400e-17 Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 1 ITIAGGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFID 255
+ + G + S LKEH L++E+HK+ P++L ++LP V QL+ +D+D RS A AL+GRLF+S A+YG + + FLGRF D
Sbjct: 230 VDVKGASENSALKEHTHTLIYEVHKINPSLLLYVLPNVCLQLQVDDLDTRSNAIALMGRLFASSHADYGAQYMKNFRDFLGRFRD 314
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2REL4_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 5.640e-17 Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
G SELKEHV L++E+HK+ P++L ++LP V QL+ ++V RS A L+G+LF+S A+YG E + FLGRF DA
Sbjct: 14 GSQRSSELKEHVYTLIYEVHKIDPSLLLYVLPNVCLQLQVDEVATRSEAIGLMGKLFASSHADYGHEFMKNFRDFLGRFRDA 95
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC75_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.380e-16 Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFID 255
G ESELKEH L++E HK+ P +L ++LP V QL+ +++++RS A AL+GRLF+S A+YG + + FLGRF D
Sbjct: 252 GNHHESELKEHAHALIYETHKIQPGLLLYVLPNVCLQLQVDEMEIRSNAIALMGRLFASSHADYGAQYMKNFREFLGRFRD 332
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YMS1_PHYSP) HSP 1 Score: 82.0 bits (201), Expect = 2.570e-16 Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
G SELKEHV L++E+HK+ P++L ++LP V QL+ ++V RS A AL+G+LF+S A+YG + + FLGRF DA
Sbjct: 333 GSQKSSELKEHVYTLIYEVHKINPSLLLYVLPNVCLQLQVDEVATRSEAIALMGKLFASSHADYGHQYMKNFRDFLGRFRDA 414
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1P7_HYAAE) HSP 1 Score: 82.0 bits (201), Expect = 2.580e-16 Identity = 37/77 (48.05%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 28 SELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
+ELKEH+ L++++H + P++L ++LP V +L+A+DV RSGA AL+G+LF+SP A+YG + + FLGRF DA
Sbjct: 344 AELKEHLDTLIYDVHTINPSLLLYVLPNVCLKLQADDVATRSGAVALMGKLFASPHADYGHQYMKNFCEFLGRFRDA 420
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I6F7_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.580e-16 Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
G SELKEHV L++E+HK+ P++L ++LP V QL+ ++V RS A AL+G+LF+S A+YG + + FLGRF DA
Sbjct: 324 GSLKPSELKEHVYTLIYEMHKINPSLLLYVLPNVCLQLQVDEVATRSEAIALMGKLFASSHADYGHQYMKNFRDFLGRFRDA 405 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1159.1336.1 >prot_Ecto-sp9_F_contig1159.1336.1 ID=prot_Ecto-sp9_F_contig1159.1336.1|Name=mRNA_Ecto-sp9_F_contig1159.1336.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=86bp ITIAGGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRback to top mRNA from alignment at Ecto-sp9_F_contig1159:736..1759- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1159.1336.1 ID=mRNA_Ecto-sp9_F_contig1159.1336.1|Name=mRNA_Ecto-sp9_F_contig1159.1336.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1024bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1159:736..1759- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1159:736..1759- >mRNA_Ecto-sp9_F_contig1159.1336.1 ID=mRNA_Ecto-sp9_F_contig1159.1336.1|Name=mRNA_Ecto-sp9_F_contig1159.1336.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1159:736..1759- (Ectocarpus species9 EcSCA_722f female)back to top |