mRNA_Ecto-sp9_F_contig1159.1336.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1159.1336.1
Unique NamemRNA_Ecto-sp9_F_contig1159.1336.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB1_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.490e-45
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1
Query:   13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
            GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKP+IWASFLGRFIDA
Sbjct:  154 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPAIWASFLGRFIDA 235          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV7_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.550e-44
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1
Query:   13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
            GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYG EKP+IWASFLGRFIDA
Sbjct:  286 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGAEKPAIWASFLGRFIDA 367          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJE0_PHYRM)

HSP 1 Score: 86.7 bits (213), Expect = 6.130e-18
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
            G    SELKEHV  L++E+HKVTP++L ++LP V  QL+ ++V  RS A AL+G+LF+S RA+YG +    +  FLGRF DA
Sbjct:  325 GSQQASELKEHVYTLIYEVHKVTPSLLLYVLPNVCLQLQVDEVATRSDAIALMGKLFASSRADYGSQYMKNFRDFLGRFRDA 406          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Sister (chromatid cohesion protein pds5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFJ9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.390e-18
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFID 255
            G  +    +EHV PL++ELHKV PN + +I P VA QL AED  VR+ A AL GRLF++  A+YG E P I+  FLGRF D
Sbjct:  256 GCGVSEIEEEHVHPLIYELHKVNPNFMLYIFPNVATQLAAEDTAVRARAVALFGRLFAALHADYGNEYPRIFREFLGRFKD 336          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Sister (chromatid cohesion protein PDS5 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWJ1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.400e-17
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 ITIAGGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFID 255
            + + G +  S LKEH   L++E+HK+ P++L ++LP V  QL+ +D+D RS A AL+GRLF+S  A+YG +    +  FLGRF D
Sbjct:  230 VDVKGASENSALKEHTHTLIYEVHKINPSLLLYVLPNVCLQLQVDDLDTRSNAIALMGRLFASSHADYGAQYMKNFRDFLGRFRD 314          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2REL4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.640e-17
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
            G    SELKEHV  L++E+HK+ P++L ++LP V  QL+ ++V  RS A  L+G+LF+S  A+YG E    +  FLGRF DA
Sbjct:   14 GSQRSSELKEHVYTLIYEVHKIDPSLLLYVLPNVCLQLQVDEVATRSEAIGLMGKLFASSHADYGHEFMKNFRDFLGRFRDA 95          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC75_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.380e-16
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFID 255
            G   ESELKEH   L++E HK+ P +L ++LP V  QL+ +++++RS A AL+GRLF+S  A+YG +    +  FLGRF D
Sbjct:  252 GNHHESELKEHAHALIYETHKIQPGLLLYVLPNVCLQLQVDEMEIRSNAIALMGRLFASSHADYGAQYMKNFREFLGRFRD 332          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YMS1_PHYSP)

HSP 1 Score: 82.0 bits (201), Expect = 2.570e-16
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
            G    SELKEHV  L++E+HK+ P++L ++LP V  QL+ ++V  RS A AL+G+LF+S  A+YG +    +  FLGRF DA
Sbjct:  333 GSQKSSELKEHVYTLIYEVHKINPSLLLYVLPNVCLQLQVDEVATRSEAIALMGKLFASSHADYGHQYMKNFRDFLGRFRDA 414          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1P7_HYAAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.580e-16
Identity = 37/77 (48.05%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   28 SELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
            +ELKEH+  L++++H + P++L ++LP V  +L+A+DV  RSGA AL+G+LF+SP A+YG +    +  FLGRF DA
Sbjct:  344 AELKEHLDTLIYDVHTINPSLLLYVLPNVCLKLQADDVATRSGAVALMGKLFASPHADYGHQYMKNFCEFLGRFRDA 420          
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Match: Uncharacterized (protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I6F7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.580e-16
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   13 GGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVRSGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA 258
            G    SELKEHV  L++E+HK+ P++L ++LP V  QL+ ++V  RS A AL+G+LF+S  A+YG +    +  FLGRF DA
Sbjct:  324 GSLKPSELKEHVYTLIYEMHKINPSLLLYVLPNVCLQLQVDEVATRSEAIALMGKLFASSHADYGHQYMKNFRDFLGRFRDA 405          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1159.1336.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.490e-4598.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.550e-4497.56protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.130e-1851.22protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
Sister8.390e-1853.09chromatid cohesion protein pds5 n=2 Tax=Monodopsid... [more]
Sister5.400e-1744.71chromatid cohesion protein PDS5 n=1 Tax=Thraustoth... [more]
Uncharacterized5.640e-1747.56protein n=3 Tax=Phytophthora kernoviae TaxID=32545... [more]
Uncharacterized1.380e-1646.91protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized2.570e-1647.56protein n=1 Tax=Phytophthora sojae (strain P6497) ... [more]
Uncharacterized2.580e-1648.05protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Uncharacterized2.580e-1647.56protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1159contigEcto-sp9_F_contig1159:736..1759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue5e-38
Seed eggNOG ortholog2880.D7FVV7
KEGG koko:K11267
EggNOG free text desc.mitotic sister chromatid cohesion
EggNOG OGsKOG1525@1,KOG1525@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928415.0768478-CDS-Ecto-sp9_F_contig1159:735..8491622928415.0768478-CDS-Ecto-sp9_F_contig1159:735..849Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 736..849 -
1692277863.144756-CDS-Ecto-sp9_F_contig1159:735..8491692277863.144756-CDS-Ecto-sp9_F_contig1159:735..849Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 736..849 -
1622928415.0984154-CDS-Ecto-sp9_F_contig1159:1615..17591622928415.0984154-CDS-Ecto-sp9_F_contig1159:1615..1759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 1616..1759 -
1692277863.1564407-CDS-Ecto-sp9_F_contig1159:1615..17591692277863.1564407-CDS-Ecto-sp9_F_contig1159:1615..1759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1159 1616..1759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1159.1336.1prot_Ecto-sp9_F_contig1159.1336.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1159 736..1759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1159.1336.1

>prot_Ecto-sp9_F_contig1159.1336.1 ID=prot_Ecto-sp9_F_contig1159.1336.1|Name=mRNA_Ecto-sp9_F_contig1159.1336.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=86bp
ITIAGGAIESELKEHVIPLVFELHKVTPNMLTFILPEVAEQLKAEDVDVR
SGACALLGRLFSSPRAEYGVEKPSIWASFLGRFIDA
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mRNA from alignment at Ecto-sp9_F_contig1159:736..1759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1159.1336.1 ID=mRNA_Ecto-sp9_F_contig1159.1336.1|Name=mRNA_Ecto-sp9_F_contig1159.1336.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1024bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1159:736..1759- (Ectocarpus species9 EcSCA_722f female)
ATAACAATCGCAGGCGGTGCGATTGAGTCCGAGCTGAAGGAGCACGTTAT CCCCCTGGTGTTCGAGCTGCACAAGGTGACCCCCAACATGCTCACCTTCA TCCTGCCCGAGGTGGCCGAACAGCTCAAGGCCGAAGACGTCGATGTGAGC TGATAACAGTAACATTCACCATCCGAGGAAGGGCAGGCGGGGGGGTCGTA CTCATGTCTTCGCATGCCTTAGCTATTAGACCATCGGCGACAGGACGGAG CATCGTTCCCACAGGACCGATGGCCAATCGCTCCTTCCTACTTTCCCACG GGTGGGGTAGGATAGTTTGCACGACCGGAATGCATTGATATGCGGGCGCT GTCCGCCCTTTGGTTATAATAGCGCCAGCGATTTCGTCGCGCGGCGTTTT CGCCAACGACCTTTGGTTAGCGTTAGCGATTTCGTCACGGATGACGGGGC CGGTGGCGGGGAGAGCGAGCGGGGGCATGCAGTCCAATCCTCTACGCGCT CTCGTGGTATGTGTTCATCCGCATGATGGAAACGACGCACTGTACTCTTC CAGGGGGGGGGGGGCGTATCTGAGTAACCCTTGTTCTTGACCAACAACAC CAGGAGNNNNNNNNNNCCCCCCTCTGCGCGCCCTGGTCGTGGGTGTTCAC CCGCGTGGTGTCAACGGCGCCCGTTCCTCCGCCGGGGGGGGGGGGGGGCG TATCTCAGTAACCCTTGTACTGTACCAACAACACCAGGGGGCCCGTATCT CAGTAATCCCTATAGCAACAACGATCCTTATCCTTATATTGAAAACGATC CTTCCTGTCGGGACGCGTGGCGGCCGATGGTCCAAATGCCCCAAGGTTTA GCACTGATATGCGATATATCCCACCTTACACGCGTACTATGTCTTACCCC CGCCCCACAGGTGCGCTCGGGCGCTTGCGCCCTGCTTGGGCGATTGTTCT CATCGCCGAGGGCCGAATACGGGGTGGAGAAGCCCTCCATCTGGGCTTCG TTCTTGGGGAGGTTCATCGACGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1159:736..1759-

>mRNA_Ecto-sp9_F_contig1159.1336.1 ID=mRNA_Ecto-sp9_F_contig1159.1336.1|Name=mRNA_Ecto-sp9_F_contig1159.1336.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1159:736..1759- (Ectocarpus species9 EcSCA_722f female)
ATAACAATCGCAGGCGGTGCGATTGAGTCCGAGCTGAAGGAGCACGTTAT
CCCCCTGGTGTTCGAGCTGCACAAGGTGACCCCCAACATGCTCACCTTCA
TCCTGCCCGAGGTGGCCGAACAGCTCAAGGCCGAAGACGTCGATATAACA
ATCGCAGGCGGTGCGATTGAGTCCGAGCTGAAGGAGCACGTTATCCCCCT
GGTGTTCGAGCTGCACAAGGTGACCCCCAACATGCTCACCTTCATCCTGC
CCGAGGTGGCCGAACAGCTCAAGGCCGAAGACGTCGATGTGCGCTCGGGC
GCTTGCGCCCTGCTTGGGCGATTGTTCTCATCGCCGAGGGCCGAATACGG
GGTGGAGAAGCCCTCCATCTGGGCTTCGTTCTTGGGGAGGTTCATCGACG
CCGTGCGCTCGGGCGCTTGCGCCCTGCTTGGGCGATTGTTCTCATCGCCG
AGGGCCGAATACGGGGTGGAGAAGCCCTCCATCTGGGCTTCGTTCTTGGG
GAGGTTCATCGACGCC
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