mRNA_Ecto-sp9_F_contig11589.1335.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig11589.1335.1
Unique Name	mRNA_Ecto-sp9_F_contig11589.1335.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig11589.1335.1 vs.
Match: Kinesin-like (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR6_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.340e-43
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 2

Query:  311 MWNAIGSKAQKVAQGMSSAVAEIQQDIQKERRSRGGGAGGGDFDEAEIYKQMLVGFQMDQAKLGKETQAALREKEDEAKHWKKLYLK 571
            MWNAIGSKAQKVAQGMSSAVAEIQQD+QKERRSRGGGAGGGDFDEAEIYKQMLVGFQMDQAKLGKETQAALREKEDEAKHWKKLYLK
Sbjct:    1 MWNAIGSKAQKVAQGMSSAVAEIQQDLQKERRSRGGGAGGGDFDEAEIYKQMLVGFQMDQAKLGKETQAALREKEDEAKHWKKLYLK 87

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11589.1335.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11589.1335.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Kinesin-like	1.340e-43	98.85	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR6...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11589	contig	Ecto-sp9_F_contig11589:443..3633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	573
Cds size	444
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11589.1335.1	prot_Ecto-sp9_F_contig11589.1335.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig11589 443..2622 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928414.96276-CDS-Ecto-sp9_F_contig11589:442..776	1622928414.96276-CDS-Ecto-sp9_F_contig11589:442..776	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11589 443..776 +
1692277863.1039166-CDS-Ecto-sp9_F_contig11589:442..776	1692277863.1039166-CDS-Ecto-sp9_F_contig11589:442..776	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11589 443..776 +
1622928414.9789062-CDS-Ecto-sp9_F_contig11589:2512..2622	1622928414.9789062-CDS-Ecto-sp9_F_contig11589:2512..2622	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11589 2513..2622 +
1692277863.1129978-CDS-Ecto-sp9_F_contig11589:2512..2622	1692277863.1129978-CDS-Ecto-sp9_F_contig11589:2512..2622	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11589 2513..2622 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928414.9945664-UTR-Ecto-sp9_F_contig11589:2622..2629	1622928414.9945664-UTR-Ecto-sp9_F_contig11589:2622..2629	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11589 2623..2629 +
1692277863.125313-UTR-Ecto-sp9_F_contig11589:2622..2629	1692277863.125313-UTR-Ecto-sp9_F_contig11589:2622..2629	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11589 2623..2629 +
1622928415.0080376-UTR-Ecto-sp9_F_contig11589:3511..3633	1622928415.0080376-UTR-Ecto-sp9_F_contig11589:3511..3633	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11589 3512..3633 +
1692277863.1354933-UTR-Ecto-sp9_F_contig11589:3511..3633	1692277863.1354933-UTR-Ecto-sp9_F_contig11589:3511..3633	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11589 3512..3633 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig11589:443..3633+
coding sequence from alignment at Ecto-sp9_F_contig11589:443..3633+

protein sequence of mRNA_Ecto-sp9_F_contig11589.1335.1

>prot_Ecto-sp9_F_contig11589.1335.1 ID=prot_Ecto-sp9_F_contig11589.1335.1|Name=mRNA_Ecto-sp9_F_contig11589.1335.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp
REERSTHDECCSSGSCRSSQRLLSDTRVPRESPHGSVVDSNAEQRGGTWC
FSSPFSLHHQQRTHVLPPRSRTRKSQCVREGEVGAFGWEKRSSCTEASET
YFDHVERHWFQGPKGGAGHELRRRRDPAGHPEGAAKQGRGGRRRRLR*

mRNA from alignment at Ecto-sp9_F_contig11589:443..3633+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig11589.1335.1 ID=mRNA_Ecto-sp9_F_contig11589.1335.1|Name=mRNA_Ecto-sp9_F_contig11589.1335.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3191bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11589:443..3633+ (Ectocarpus species9 EcSCA_722f female)
CGCGAGGAGAGAAGCACGCACGACGAGTGCTGCAGTAGTGGCTCGTGTCG
TTCTAGTCAACGTTTGCTCTCCGACACACGTGTACCTCGGGAATCTCCTC
ACGGTTCTGTGGTTGATAGCAACGCGGAACAACGCGGCGGCACCTGGTGT
TTCTCATCGCCTTTTAGCCTACACCACCAGCAGCGCACGCACGTACTTCC
GCCCCGCAGCCGAACAAGGAAATCCCAGTGTGTAAGAGAGGGAGAGGTCG
GAGCATTTGGTTGGGAAAAGAGAAGCAGTTGCACGGAAGCATCGGAGACT
TACTTCGACCATGTGGAACGCCATTGGTTCCAAGGTAAGGCCAATGAGTT
GTGTTTTGTATTTTGAAATGCTTCCGCTTCGTCCATCTCTACTATTTACT
TGTATTTACTACAGCAGTACTTCGGATGTACTTACTCTAGGTTGTAGTAG
GTCTGCCTTCAGCAGTATCATCGTAGAATACTTCTGTGCTGCTGTGCACG
CCTAGAGCTGTACCTTGCTCATGAGCATTCGTCCGAAAGCTTGCTGCACG
CAGCAGATGTACCATGCTCTTGTGTGGCGACGCCCGCCTGCTTTCGCTCC
TGCCGTCTTGACTCGAGCCATCATCACACGTTGTACAATATATATTATAG
CGAGAGAGAAAACGCGCTGGATTTATCTGTTGTATCTGCTGTATTTTCAT
GAGTCAACTGCGACAGCCGCGGCGATGTGTTGAGACCATGTTGGAACAGC
GGGGAAAATCACACCGTCCCCCTCGCGAGCAACTCGTGACACCCTTTACT
GCCCAGGTATCTGCAATAGACACCAGCGCCTTTCAGTTTACCGTAACAAT
AGCAATACCACGAGCTAGACACTCTGGTCGAGGGGGAACAAATGAGACAA
GTTGAGTTCTGGTTCGTACAACTACCACTACTCTGTAAGAAGAGGAAGCG
GCGGGGGTAGCGGACGCGGAAGCAGCGGCGGCGGCGGCGGACTGTGCAAC
AACGGCGGCAACCGGGCGCGTTGTGTGGGTTACTATTCTCGAACAGGCGC
GTTTCACGCCAGCCTGTTTTGGCAACCACCGCCAAGTGACGGGCGTCGAA
AGCAGCAGACCGTTTCAAGCTGCTGTCGCACGCAAGGACAGCAGTGCTTG
GTGAATCAACAGCCATAATACTTCAAGTTCAGCATATGTACATCGTATTG
TAACAGGAGTGTTTGGCCCTTTGGTCTTGCCGAACGCTGTCTCGTGAAGA
GGTGGCCGATCCCCGACGCACGCTTCCACCACGCCAGCAGAAGAGAGCCG
ACTGTTCCGAGTAAAGCGCTGCTCTGGTCGCGACTCTTTGGAAGGGTACC
GAATTGCTCGTGTCGGCTAGAACTTGCGCCATCATGTGTTGCGATGTTGT
ACATTGTTCGTACATGAGTGTTTTTGAAGACGGTTTGGCGAGTGCGGCGG
ACCCTTGAGTCGCAATCGCGCGGCTCCACCGCCGTGTATTGTTGTTCCTT
GTGCACGCGAAGTTTGCCGGATGCCTTCGTTGTCGATCGGCGGGGAGGGT
GACAATGTTCCGCTACCTCGACCTTGAAACCGGCTGGTAGCGGTGGAAGT
GTCGGTGACAAAACAACAGCTGCTGTGCTCCGTACGGCGCTTTGAGTCGT
AAGGACCATCGCAGTTGTCCCCGTCTTGGCACCCTCTTTGAGTTAGCCTC
TAGACTTGTGCCCACCGAAGCCGAACGATATTCCTCCGGGTCAACACGGA
GTGTGACCCAGGCATGCTAGGAAGAAAGAGGTTATTTGGTTTGGGTGCAA
TTCTTGTGTGTCGAAAAGAGTGAAGACAGCACTACAAATATCAGCAACAA
ACGCCGACGGCAGCAGCGCAGAGCGTCGTGCGTGCCTCTTCCGGCTTCGC
CTTTCGCAGGACACAAATATGATGCCGTGGATGAAGCTACAGTAGTGCGG
GAGAGAATAGTTGCGGCGCAAAGCAGCCGTCGCTGTTGAGGGCAGGCACG
AGCCAAGACGTATCGGTGTTCCTAACCGTCGTCATTCCACCGCTGCTGCT
GCTGCTTATTACGCGAACAGGCCCAAAAGGTGGCGCAGGGCATGAGCTCC
GCCGTCGCAGAGATCCAGCAGGACATCCAGAAGGAGCGGCGAAGCAGGGG
CGGGGGGGCCGGCGGCGGCGACTTCGATGAGGCAGAGGTACGCATACGCG
GTGCCGGCGGGGGGAGGACAAACTCGCGTCGTTTTCGCGGAAAGCGGAGT
TTATAGGGGGTCCAACGCACACAGCCGCATGTCATTTCTCGGGGGGTGCC
TAAATCTTGTTGTCGTCGTCCAGGTCTTGTTCTTGTTGTAGTTCTTATGT
TGTTGTCGTCGCCGTTGTTCTGAATATCGTTGCCATGTTGTTCCTTCGTT
GCCATTCCGATCTTGTCCGTGTTTGAGACCTCGCTATTCTCTTGTTCTTG
TCGTCGTCAGATCATAGCCATTCTCGTCTTGTCCTCTACTTCTCGTCTTG
TTTGTGTCTTCGACTGGCTCAGTCACCTTCTCACCACAAGCGCCTCTTTT
GTTGAGCGCAAACGCACTTGGATACCATGACACCCTTCTCACAAACCGAA
GACACGCCTTGTCAGCACGAAAACTATTATGGAGGCCCTCTTGTGCGGCG
ATGCCGTCAAGATCACCGGCACGCCCCGCGGTCTGTACAAATTGCCGTGC
GCTGCGCACTTGGCGAATTTTGCGGATGATGGAACCGACTCAAGACTGAT
AGGGCGCCCCACGTCTTGTCGACTGCGCGCACTTCCCCCCTTCGAATCCG
GTTGCCATGGATAGCCAGCTCTGTACGCTCCTGTCACACTGCGGAGCGTT
CGCCACCCCCCTGCCAGTATAGCCCACGCAGGTTTTTATTGAGCAAACAT
GTTGGATGAAGCATGGAATTGGTGAAAAGTCTGGGGAGCGTTAGGGTCTA
CATAGCACCTGCCTCTCTCTATTGTACTTACTAGATAAGCTTCAGAATTT
CTTCGCGTAGGAAGTCGTGCTCGAAACCCTCAACCCCCCCCCCCCCCGGC
CTCTCTTCGAACGTCCCAGATCTACAAGCAAATGCTGGTGGGGTTCCAGA
TGGACCAGGCGAAGCTAGGCAAGGAAACCCAGGCGGCCCTGAGAGAGAAA
GAAGACGAGGCGAAACATTGGAAGAAGCTGTACCTCAAGGC

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11589:443..3633+

>mRNA_Ecto-sp9_F_contig11589.1335.1 ID=mRNA_Ecto-sp9_F_contig11589.1335.1|Name=mRNA_Ecto-sp9_F_contig11589.1335.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11589:443..3633+ (Ectocarpus species9 EcSCA_722f female)
CGCGAGGAGAGAAGCACGCACGACGAGTGCTGCAGTAGTGGCTCGTGTCG
TTCTAGTCAACGTTTGCTCTCCGACACACGTGTACCTCGGGAATCTCCTC
ACGGTTCTGTGGTTGATAGCAACGCGGAACAACGCGGCGGCACCTGGTGT
TTCTCATCGCCTTTTAGCCTACACCACCAGCAGCGCACGCACGTACTTCC
GCCCCGCAGCCGAACAAGGAAATCCCAGTGTGTAAGAGAGGGAGAGGTCG
GAGCATTTGGTTGGGAAAAGAGAAGCAGTTGCACGGAAGCATCGGAGACT
TACTTCGACCATGTGGAACGCCATTGGTTCCAAGCGCGAGGAGAGAAGCA
CGCACGACGAGTGCTGCAGTAGTGGCTCGTGTCGTTCTAGTCAACGTTTG
CTCTCCGACACACGTGTACCTCGGGAATCTCCTCACGGTTCTGTGGTTGA
TAGCAACGCGGAACAACGCGGCGGCACCTGGTGTTTCTCATCGCCTTTTA
GCCTACACCACCAGCAGCGCACGCACGTACTTCCGCCCCGCAGCCGAACA
AGGAAATCCCAGTGTGTAAGAGAGGGAGAGGTCGGAGCATTTGGTTGGGA
AAAGAGAAGCAGTTGCACGGAAGCATCGGAGACTTACTTCGACCATGTGG
AACGCCATTGGTTCCAAGGCCCAAAAGGTGGCGCAGGGCATGAGCTCCGC
CGTCGCAGAGATCCAGCAGGACATCCAGAAGGAGCGGCGAAGCAGGGGCG
GGGGGGCCGGCGGCGGCGACTTCGATGAGCCCAAAAGGTGGCGCAGGGCA
TGAGCTCCGCCGTCGCAGAGATCCAGCAGGACATCCAGAAGGAGCGGCGA
AGCAGGGGCGGGGGGGCCGGCGGCGGCGACTTCGATGA