mRNA_Ecto-sp9_F_contig11588.1334.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Serine (palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG3_ECTSI) HSP 1 Score: 288 bits (736), Expect = 2.330e-89 Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 1
Query: 1 LPLQVVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSEKFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALVPVEGL 471
L L+VVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGA+PGLKVTSCALSPIVHVALAGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSEKFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALVPVEGL
Sbjct: 218 LELKVVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAIPGLKVTSCALSPIVHVALAGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSEKFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALVPVEGL 374
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Aminotran_1_2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV36_9PHAE) HSP 1 Score: 282 bits (721), Expect = 1.310e-84 Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 1
Query: 10 QVVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSEKFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALVPVEGL 471
QVV HQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGA+PGLKVTSCALSPIVHVALAGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSEKFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALVP EGL
Sbjct: 427 QVVAHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAIPGLKVTSCALSPIVHVALAGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSEKFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALVPAEGL 580
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Pyridoxal (phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A0_9STRA) HSP 1 Score: 125 bits (313), Expect = 4.280e-27 Identity = 78/153 (50.98%), Postives = 97/153 (63.40%), Query Frame = 1
Query: 13 VVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAE-PNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAG-----EQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSEKFPPPPTIRITTNALHTREQLEQAVRVLAEATAAAL 453
VVDHQRLS AGYC+SAAAPPFT+AAA ++ +L +E P L+ LRTNA+ L + V GL+V S SPIVHVALAG +QE R L+ IA+ C G A+ S Y+ E+ PP TIR+ NAL TREQL V +A+A A L
Sbjct: 370 VVDHQRLSGAGYCFSAAAPPFTAAAAGESIRLLESEGPQLLQQLRTNAKRLSSGLARVNGLQVISSEESPIVHVALAGAGASNQQEHLQQRHTLEKIAEACRNEGYAVAVSRYLQKERHHPPATIRLAVNALQTREQLNGCVAAVAKAAAQVL 522
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Aminotran_1_2 (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT10_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.730e-26 Identity = 74/159 (46.54%), Postives = 96/159 (60.38%), Query Frame = 1
Query: 10 QVVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAGEQEAAAVR----LVLQGIAKRCAEGGVALTTSTY-------IPSEKFPPPPTIRITTNALHTREQLEQAVRVLAEATAAAL 453
+VVDHQRLS AGYCYSA+APPFTS+AA AAL +L EP LV LR NA +L A+G +PGLKV S +SP++HV +A R VLQ IA+ C + G A+ TS Y + P P++R+ +A+HTR +LE AV + A L
Sbjct: 362 EVVDHQRLSGAGYCYSASAPPFTSSAAMAALALLEKEPELVTKLRENAVWLARALGKIPGLKVRSQEISPVLHVGVAEAVSNGWTREEEERVLQAIARACVDAGYAVVTSKYTVLDVEAVSKGGLLPEPSLRLAVSAVHTRAELEGAVEAIRRGAAGVL 520
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Aminotran_1_2 (domain-containing protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3ZFM1_BRAFL) HSP 1 Score: 101 bits (251), Expect = 2.980e-19 Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query: 13 VVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSEK-FPPPPTIRITTNALHTREQLEQAVRVL 429
V+DHQRLS GYC+SA+ PP S AAS AL ++ +P + LRT ++LH + ++PGLKV +SPI+H+ LA A L+ + C GVALT + Y+ E+ PPP+IR+ N T + ++ A V+
Sbjct: 321 VIDHQRLSGQGYCFSASLPPMLSVAASEALRIMEEKPGIFEELRTRCQWLHTKLSSIPGLKVCGEPISPIMHLQLAAPSSRAEDTKKLETMCNECMNQGVALTVARYLEQEEHLVPPPSIRVAVNVELTEDDIDHATSVI 460
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Aminotran_1_2 (domain-containing protein n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6HYQ5_NEOLE) HSP 1 Score: 97.1 bits (240), Expect = 3.720e-19 Identity = 62/152 (40.79%), Postives = 89/152 (58.55%), Query Frame = 1
Query: 13 VVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVAL---AGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSE-KFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALV 456
VVDHQRLS GYC+SA+ PP +AAA AL ++ P + A L+ + +H ++ + GLKV +LSP +H+ L G +E V+L LQ I +C G+ALT + Y+ E K PPP+IR+ T E+LE+A + EA A L+
Sbjct: 91 VVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKKKCQHIHKSLQGISGLKVVGESLSPALHLQLEESTGSREKD-VKL-LQEIVIQCMNEGIALTQARYLDKEEKCLPPPSIRVVVTVEQTEEELERAASTIREAAQAVLL 240
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Aminotran_1_2 (domain-containing protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A643BS04_BALPH) HSP 1 Score: 95.5 bits (236), Expect = 7.120e-19 Identity = 56/153 (36.60%), Postives = 89/153 (58.17%), Query Frame = 1
Query: 13 VVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAGEQEAAAVR----LVLQGIAKRCAEGGVALTTSTYIPSE-KFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALV 456
V+DHQRLS GYC+SA+ PP +AAA AL ++ P + A L+ + +H A+ + GLKV ++SP H+ L +E+ R +LQ I +C + G+ALT + Y+ E K+ PPP+IR+ T E+LE+A ++++ L+
Sbjct: 64 VIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCKRIHKALQGISGLKVVGESISPAFHLQL---EESTGCRERDVKLLQEIVTQCMDRGIALTLARYLEKEEKYLPPPSIRVVVTVEQTEEELEKAATMISKVAQTVLL 213
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Aminotran_1_2 (domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=N1PB18_CAPTE) HSP 1 Score: 100 bits (248), Expect = 7.690e-19 Identity = 57/141 (40.43%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 13 VVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAGEQEAAAV-RLVLQGIAKRCAEGGVALTTSTYIPSEK-FPPPPTIRITTNALHTREQLEQAVRVL 429
VVDHQRLS GYC+SA+ PP S AA AL +L+ +P + L+ N++++H + + GLKV+ A+SPI++V L+ V R +LQ I C G+ALT ++ E+ F PPP+IR+ N T+E++++A+R++
Sbjct: 322 VVDHQRLSGLGYCFSASNPPMLSQAAITALQILQDKPEKLERLQENSKWMHRQLAQIDGLKVSGEAISPIIYVQLSDATGQTGVDRALLQRIVSECEIQGIALTCPAFLDDEELFVPPPSIRVAVNCDLTKEEIDEAIRII 462
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Aminotran_1_2 (domain-containing protein (Fragment) n=5 Tax=Euarchontoglires TaxID=314146 RepID=Q3V3A0_MOUSE) HSP 1 Score: 98.2 bits (243), Expect = 8.100e-19 Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 13 VVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVAL---AGEQEAAAVRLVLQGIAKRCAEGGVALTTSTYIPSE-KFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALV 456
VVDHQRLS GYC+SA+ PP +AAA AL ++ P++ A L+ + +H ++ V GLKV +LSP +H+ L G +E V+L LQ I +C + G+ALT + Y+ E K PPP+IR+ T E+L++A + EA A L+
Sbjct: 187 VVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPDIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQLEESTGSREKD-VKL-LQAIVDQCMDKGIALTQARYLDKEEKCLPPPSIRVVVTVEQTEEELQRAASTIREAAQAVLL 336
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Match: Serine (palmitoyltransferase long chain base subunit 1 n=2 Tax=Neovison vison TaxID=452646 RepID=A0A8C7BAJ0_NEOVI) HSP 1 Score: 99.8 bits (247), Expect = 9.380e-19 Identity = 60/150 (40.00%), Postives = 85/150 (56.67%), Query Frame = 1
Query: 13 VVDHQRLSAAGYCYSAAAPPFTSAAASAALGMLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAGEQEAAAVRL-VLQGIAKRCAEGGVALTTSTYIPSE-KFPPPPTIRITTNALHTREQLEQAVRVLAEATAAALV 456
V+DHQRLS GYC+SA+ PP +AAA AL ++ P + L+ E +H A+ + GLKV +LSP H+ L A + +LQ I C G+ALT + Y+ E K PPP+IR+ T E+LE+A R++ EA A L+
Sbjct: 315 VIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFLVLKEKCERIHKALQGISGLKVVGESLSPAFHLQLTDSTGAREKDVTLLQEIVNHCMNRGIALTQARYLEKEEKCLPPPSIRVVVTVEQTDEELERAARIIKEAAQAVLL 464 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11588.1334.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11588.1334.1 >prot_Ecto-sp9_F_contig11588.1334.1 ID=prot_Ecto-sp9_F_contig11588.1334.1|Name=mRNA_Ecto-sp9_F_contig11588.1334.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=123bp MLRAEPNLVAALRTNAEFLHGAVGAVPGLKVTSCALSPIVHVALAGEQEAback to top mRNA from alignment at Ecto-sp9_F_contig11588:714..3690- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11588.1334.1 ID=mRNA_Ecto-sp9_F_contig11588.1334.1|Name=mRNA_Ecto-sp9_F_contig11588.1334.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2977bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11588:714..3690- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11588:714..3690- >mRNA_Ecto-sp9_F_contig11588.1334.1 ID=mRNA_Ecto-sp9_F_contig11588.1334.1|Name=mRNA_Ecto-sp9_F_contig11588.1334.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11588:714..3690- (Ectocarpus species9 EcSCA_722f female)back to top |