mRNA_Ecto-sp9_F_contig11584.1331.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11584.1331.1
Unique NamemRNA_Ecto-sp9_F_contig11584.1331.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11584.1331.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.700e-41
Identity = 101/107 (94.39%), Postives = 102/107 (95.33%), Query Frame = -2 
Query:    3 GQGSPSTPGLMPPWTGGVSPARGACPPSPCPPPSPWGVGGVGEGWYAPGGVAGSSXXXXXXXXXXXXQSLPSPSPRRSLNGTPXXXXXXXXXXLDRASSAGIVGFSP 323
            GQGSPSTPGLMPPWTGGVSPARGACPPSPCPPPSPWGVGGVGEGWYAPGG AGS XXXXXXXXXX   SLPSPSPRRSLNGTPXXXXXXXXXXLD+ASSAGIVGFSP
Sbjct: 1229 GQGSPSTPGLMPPWTGGVSPARGACPPSPCPPPSPWGVGGVGEGWYAPGGAAGSXXXXXXXXXXX---SLPSPSPRRSLNGTPXXXXXXXXXXLDQASSAGIVGFSP 1332
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11584.1331.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.700e-4194.39protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11584contigEcto-sp9_F_contig11584:1838..2212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928414.3878508-UTR-Ecto-sp9_F_contig11584:1837..18551622928414.3878508-UTR-Ecto-sp9_F_contig11584:1837..1855Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11584 1838..1855 +
1692277862.8975298-UTR-Ecto-sp9_F_contig11584:1837..18551692277862.8975298-UTR-Ecto-sp9_F_contig11584:1837..1855Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11584 1838..1855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928414.3982317-CDS-Ecto-sp9_F_contig11584:1855..22121622928414.3982317-CDS-Ecto-sp9_F_contig11584:1855..2212Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11584 1856..2212 +
1692277862.9071019-CDS-Ecto-sp9_F_contig11584:1855..22121692277862.9071019-CDS-Ecto-sp9_F_contig11584:1855..2212Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11584 1856..2212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11584.1331.1prot_Ecto-sp9_F_contig11584.1331.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11584 1856..2212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11584.1331.1

>prot_Ecto-sp9_F_contig11584.1331.1 ID=prot_Ecto-sp9_F_contig11584.1331.1|Name=mRNA_Ecto-sp9_F_contig11584.1331.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MPALDARSSGGVPSTGLRGGVPLSERRGDGDGNDCCFCFRCCCCCCEELP
ATPPGAYHPSPTPPTPQGEGGGHGDGGQAPLAGETPPVQGGISPGVDGEP
CPTPPPAAAVAAAAAAPPP
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mRNA from alignment at Ecto-sp9_F_contig11584:1838..2212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11584.1331.1 ID=mRNA_Ecto-sp9_F_contig11584.1331.1|Name=mRNA_Ecto-sp9_F_contig11584.1331.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11584:1838..2212+ (Ectocarpus species9 EcSCA_722f female)
CGCGGGGAAAACCCAACGATGCCGGCGCTTGACGCCCGGTCCAGCGGAGG
GGTCCCGTCGACTGGCCTGCGCGGGGGAGTACCGTTGAGCGAGCGGCGCG
GCGACGGTGACGGCAACGATTGTTGCTTCTGCTTCCGCTGCTGCTGCTGC
TGCTGTGAGGAGCTTCCCGCTACCCCGCCGGGCGCGTACCACCCTTCACC
GACTCCACCGACCCCCCAGGGAGAGGGCGGGGGGCACGGGGACGGCGGGC
AAGCGCCCCTCGCGGGGGAAACGCCGCCTGTCCAAGGTGGCATCAGTCCC
GGGGTGGACGGGGAGCCTTGCCCAACGCCGCCGCCTGCGGCAGCTGTGGC
AGCAGCTGCGGCTGCGCCGCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11584:1838..2212+

>mRNA_Ecto-sp9_F_contig11584.1331.1 ID=mRNA_Ecto-sp9_F_contig11584.1331.1|Name=mRNA_Ecto-sp9_F_contig11584.1331.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11584:1838..2212+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGGCGCTTGACGCCCGGTCCAGCGGAGGGGTCCCGTCGACTGGCCT
GCGCGGGGGAGTACCGTTGAGCGAGCGGCGCGGCGACGGTGACGGCAACG
ATTGTTGCTTCTGCTTCCGCTGCTGCTGCTGCTGCTGTGAGGAGCTTCCC
GCTACCCCGCCGGGCGCGTACCACCCTTCACCGACTCCACCGACCCCCCA
GGGAGAGGGCGGGGGGCACGGGGACGGCGGGCAAGCGCCCCTCGCGGGGG
AAACGCCGCCTGTCCAAGGTGGCATCAGTCCCGGGGTGGACGGGGAGCCT
TGCCCAACGCCGCCGCCTGCGGCAGCTGTGGCAGCAGCTGCGGCTGCGCC
GCCGCCGATGCCGGCGCTTGACGCCCGGTCCAGCGGAGGGGTCCCGTCGA
CTGGCCTGCGCGGGGGAGTACCGTTGAGCGAGCGGCGCGGCGACGGTGAC
GGCAACGATTGTTGCTTCTGCTTCCGCTGCTGCTGCTGCTGCTGTGAGGA
GCTTCCCGCTACCCCGCCGGGCGCGTACCACCCTTCACCGACTCCACCGA
CCCCCCAGGGAGAGGGCGGGGGGCACGGGGACGGCGGGCAAGCGCCCCTC
GCGGGGGAAACGCCGCCTGTCCAAGGTGGCATCAGTCCCGGGGTGGACGG
GGAGCCTTGCCCAACGCCGCCGCCTGCGGCAGCTGTGGCAGCAGCTGCGG
CTGCGCCGCCGCCG
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