mRNA_Ecto-sp9_F_contig1158.1329.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z7_9PHAE) HSP 1 Score: 157 bits (398), Expect = 6.830e-43 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 226
YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD
Sbjct: 581 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 655
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Cyclopropane-fatty-acyl-phospholipid (synthase/ oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I1_ECTSI) HSP 1 Score: 157 bits (398), Expect = 2.020e-42 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 226
YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD
Sbjct: 996 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 1070
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUH5_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 6.570e-20 Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLR 223
YA TL++WR RFN +L V AQGFDS F+RC+NYY YCEAGF S+TEG ++L F+RPG L P + T+ + R
Sbjct: 667 YAETLREWRRRFNKNLTAVRAQGFDSIFIRCWNYYLCYCEAGFQSQTEGCLILVFSRPGNRNLLPYSSTNFITR 740
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDE0_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 1.250e-19 Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLR 223
YA TL++WRHRFN +L ++ QGFDS FVRC+NYY YCEAGF ++TEG +L F+RPG L P A T + R
Sbjct: 366 YAQTLREWRHRFNANLPEIRRQGFDSVFVRCWNYYLCYCEAGFQTQTEGCTILVFSRPGNYNLIPFADTRFIER 439
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Mycolic (acid cyclopropane synthetase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ8_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.790e-19 Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILL 220
YA TL++WR RF +L + A+GFD+ F RC++YYFAYCEAGF S+TEG ++LTF+RPG AAL +A T +L
Sbjct: 652 YAETLREWRCRFTDALPALRARGFDAVFARCWHYYFAYCEAGFASQTEGCLILTFSRPGNAALLVDAETHRVL 724
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REM9_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.400e-15 Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 226
YA TL++WR RFN +V GFD FVRC+NYY YCEAGF S+T G ++L FAR T L P TS ++R+
Sbjct: 886 YAETLREWRRRFNQQRARVRDLGFDELFVRCWNYYLCYCEAGFDSQTLGCLILVFARQCTRDLAPLGTTSAVVRE 960
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Cyclopropane-fatty-acyl-phospholipid (synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K125_FISSO) HSP 1 Score: 80.5 bits (197), Expect = 2.600e-15 Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDP 196
YA TL +WR RFN S D V GFD F+RC+NYY YCEAGF S+TE ++L F+R G A+L P
Sbjct: 911 YAQTLAEWRRRFNASEDVVRKLGFDDVFLRCWNYYLTYCEAGFFSQTENCLILVFSRQGCASLLP 975
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQJ1_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.670e-14 Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDP 196
YA TL +WR RFN D V GFD F+R +NYY YCEAGF S+TE ++L F+RPG AL P
Sbjct: 811 YAETLAEWRRRFNGKEDVVRKMGFDDVFLRVWNYYLTYCEAGFRSQTENCLILVFSRPGNKALMP 875
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SWZ7_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 5.190e-14 Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 226
YA TL +WR RFN + V + GFD F+R +NYY YCEAGF S+TE ++L F+RPG +L P + + + +D
Sbjct: 368 YARTLAEWRRRFNSNESTVRSLGFDDIFMRVWNYYLTYCEAGFHSQTENCLILVFSRPGCRSLAPLSESRCITQD 442
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Amino_oxidase (domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DRB0_CAFRO) HSP 1 Score: 76.3 bits (186), Expect = 8.040e-14 Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 2
Query: 2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARP 175
YA TL+ WR FN LD+V A GFD+AFVR +NYY AYCEAGF ++T GL L FA+P
Sbjct: 1151 YAETLRVWRRNFNARLDRVRALGFDAAFVRMWNYYLAYCEAGFDTQTLGLHALVFAKP 1208 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1158.1329.1 >prot_Ecto-sp9_F_contig1158.1329.1 ID=prot_Ecto-sp9_F_contig1158.1329.1|Name=mRNA_Ecto-sp9_F_contig1158.1329.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp LRAHPQAVEASLQPLVGPGYGPRLRLGLRQVLQLLLRLLRGRLRQPHGGAback to top mRNA from alignment at Ecto-sp9_F_contig1158:21004..22084- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1158.1329.1 ID=mRNA_Ecto-sp9_F_contig1158.1329.1|Name=mRNA_Ecto-sp9_F_contig1158.1329.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1081bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1158:21004..22084- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1158:21004..22084- >mRNA_Ecto-sp9_F_contig1158.1329.1 ID=mRNA_Ecto-sp9_F_contig1158.1329.1|Name=mRNA_Ecto-sp9_F_contig1158.1329.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1158:21004..22084- (Ectocarpus species9 EcSCA_722f female)back to top |