mRNA_Ecto-sp9_F_contig1158.1329.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1158.1329.1
Unique NamemRNA_Ecto-sp9_F_contig1158.1329.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z7_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.830e-43
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 226
            YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD
Sbjct:  581 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 655          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Cyclopropane-fatty-acyl-phospholipid (synthase/ oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I1_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.020e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 226
            YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD
Sbjct:  996 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 1070          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUH5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.570e-20
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLR 223
            YA TL++WR RFN +L  V AQGFDS F+RC+NYY  YCEAGF S+TEG ++L F+RPG   L P + T+ + R
Sbjct:  667 YAETLREWRRRFNKNLTAVRAQGFDSIFIRCWNYYLCYCEAGFQSQTEGCLILVFSRPGNRNLLPYSSTNFITR 740          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDE0_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 1.250e-19
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLR 223
            YA TL++WRHRFN +L ++  QGFDS FVRC+NYY  YCEAGF ++TEG  +L F+RPG   L P A T  + R
Sbjct:  366 YAQTLREWRHRFNANLPEIRRQGFDSVFVRCWNYYLCYCEAGFQTQTEGCTILVFSRPGNYNLIPFADTRFIER 439          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Mycolic (acid cyclopropane synthetase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.790e-19
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILL 220
            YA TL++WR RF  +L  + A+GFD+ F RC++YYFAYCEAGF S+TEG ++LTF+RPG AAL  +A T  +L
Sbjct:  652 YAETLREWRCRFTDALPALRARGFDAVFARCWHYYFAYCEAGFASQTEGCLILTFSRPGNAALLVDAETHRVL 724          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REM9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.400e-15
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 226
            YA TL++WR RFN    +V   GFD  FVRC+NYY  YCEAGF S+T G ++L FAR  T  L P   TS ++R+
Sbjct:  886 YAETLREWRRRFNQQRARVRDLGFDELFVRCWNYYLCYCEAGFDSQTLGCLILVFARQCTRDLAPLGTTSAVVRE 960          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Cyclopropane-fatty-acyl-phospholipid (synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K125_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 2.600e-15
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDP 196
            YA TL +WR RFN S D V   GFD  F+RC+NYY  YCEAGF S+TE  ++L F+R G A+L P
Sbjct:  911 YAQTLAEWRRRFNASEDVVRKLGFDDVFLRCWNYYLTYCEAGFFSQTENCLILVFSRQGCASLLP 975          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQJ1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.670e-14
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDP 196
            YA TL +WR RFN   D V   GFD  F+R +NYY  YCEAGF S+TE  ++L F+RPG  AL P
Sbjct:  811 YAETLAEWRRRFNGKEDVVRKMGFDDVFLRVWNYYLTYCEAGFRSQTENCLILVFSRPGNKALMP 875          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SWZ7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.190e-14
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPGTAALDPNAVTSILLRD 226
            YA TL +WR RFN +   V + GFD  F+R +NYY  YCEAGF S+TE  ++L F+RPG  +L P + +  + +D
Sbjct:  368 YARTLAEWRRRFNSNESTVRSLGFDDIFMRVWNYYLTYCEAGFHSQTENCLILVFSRPGCRSLAPLSESRCITQD 442          
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Match: Amino_oxidase (domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DRB0_CAFRO)

HSP 1 Score: 76.3 bits (186), Expect = 8.040e-14
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 2
Query:    2 YAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARP 175
            YA TL+ WR  FN  LD+V A GFD+AFVR +NYY AYCEAGF ++T GL  L FA+P
Sbjct: 1151 YAETLRVWRRNFNARLDRVRALGFDAAFVRMWNYYLAYCEAGFDTQTLGLHALVFAKP 1208          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1158.1329.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.830e-43100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Cyclopropane-fatty-acyl-phospholipid2.020e-42100.00synthase/ oxidoreductase n=1 Tax=Ectocarpus silicu... [more]
Hypothetical6.570e-2056.76protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical1.250e-1956.76protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Mycolic5.790e-1957.53acid cyclopropane synthetase-domain-containing pro... [more]
Hypothetical1.400e-1552.00protein n=2 Tax=Rhizochromulina marina TaxID=10348... [more]
Cyclopropane-fatty-acyl-phospholipid2.600e-1556.92synthase n=2 Tax=Fistulifera solaris TaxID=1519565... [more]
Hypothetical1.670e-1455.38protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Hypothetical5.190e-1446.67protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Amino_oxidase8.040e-1462.07domain-containing protein n=5 Tax=Cafeteria roenbe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1158contigEcto-sp9_F_contig1158:21004..22084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size240
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1158.1329.1prot_Ecto-sp9_F_contig1158.1329.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1158 21109..22084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928413.2624688-UTR-Ecto-sp9_F_contig1158:21003..211081622928413.2624688-UTR-Ecto-sp9_F_contig1158:21003..21108Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1158 21004..21108 -
1692277862.6591468-UTR-Ecto-sp9_F_contig1158:21003..211081692277862.6591468-UTR-Ecto-sp9_F_contig1158:21003..21108Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1158 21004..21108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928413.5984-CDS-Ecto-sp9_F_contig1158:21108..212931622928413.5984-CDS-Ecto-sp9_F_contig1158:21108..21293Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1158 21109..21293 -
1692277862.668339-CDS-Ecto-sp9_F_contig1158:21108..212931692277862.668339-CDS-Ecto-sp9_F_contig1158:21108..21293Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1158 21109..21293 -
1622928413.615541-CDS-Ecto-sp9_F_contig1158:22029..220841622928413.615541-CDS-Ecto-sp9_F_contig1158:22029..22084Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1158 22030..22084 -
1692277862.6775987-CDS-Ecto-sp9_F_contig1158:22029..220841692277862.6775987-CDS-Ecto-sp9_F_contig1158:22029..22084Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1158 22030..22084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1158.1329.1

>prot_Ecto-sp9_F_contig1158.1329.1 ID=prot_Ecto-sp9_F_contig1158.1329.1|Name=mRNA_Ecto-sp9_F_contig1158.1329.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp
LRAHPQAVEASLQPLVGPGYGPRLRLGLRQVLQLLLRLLRGRLRQPHGGA
HDAHLREAGDSGARPQCRHLDTPAGLDLP*
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mRNA from alignment at Ecto-sp9_F_contig1158:21004..22084-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1158.1329.1 ID=mRNA_Ecto-sp9_F_contig1158.1329.1|Name=mRNA_Ecto-sp9_F_contig1158.1329.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1081bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1158:21004..22084- (Ectocarpus species9 EcSCA_722f female)
CTACGCGCACACCCTCAAGCAGTGGAGGCATCGCTTCAACCACTCGTTGG ACCAGGTACTGTAACAAGAAAGGTTTTGTGGAGCCTGTTACCCACGGGGG GGATATAGCTGTCTGTGTGCTGCTCGGGGAATCGTAGAAATACAGGTACA GTAGCTCCCGCTGACTCTTTGTGAATTTATTCATTGCTAGTCTATCCCAG ACTTCAGGAGATGAATGAGTTGATTGTGTCATAGTAGGGGAAAAAAGAGA CCACCACCATTCCAGATCGTCGTACTTTTCCTGGGGCAAAGCAGGTGAAT AAAGACCAATACTATCGCAGTCGTCCTATCCTCTCATTGTCCGCCAACGT TCTACAATAATTCGAGCGCTCCTTCTCCTGAATACGATCAACAGCAGTCC AAGGCGTTTTTTTTCTCACACCATTACAATTTCGAGTGTGTTAGTCCTCC CGCGGTATTCTTCGTTCCAACTCTGCCTCTTGCTGCTAACGCATGCAAGC AGATCAACTGCTCCGCATGCGGAAAGCGTTTTTTTCTGACGCAGTCGTAC GCAAATAGAAGTACATCTTTTCGTATGTACCAGTTCGGAAATTGTTCCTG CGCTGCTGCTCTCTGTGCAACAACACCGCAAAAAAAAGTCGAAATTGCCT CACTGCACCAAAAAAAGCGGTGGCCCACAGAACTTTCGTAGCACTCCGGA AATTGTTTCTAAGCTGCTTGCTCCCTGTGCAACAACACCGCAACAAACGT TGAAAAAATGCCTCACGACATGAAAATGAACGGCTTGGCAGGTTATGGCC CAAGGCTTCGACTCGGCCTTCGTCAGGTGCTTCAACTACTACTTCGCCTA CTGCGAGGCCGGCTTCGTCAGCCGCACGGAGGGGCTCATGATGCTCACCT TCGCGAGGCCGGGGACAGCGGCGCTCGACCCCAATGCCGTCACCTCGATA CTCCTGCGGGATTAGATTTACCGTAGGTTGCATACGCAAGATAGCAACAC ACCCTGGACCGGTTTTCGATCCTCCTCCGGGATTAGCAGGTTGCATGCGC AGGATACCACCCCCCCCCCCCCCCCATGGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1158:21004..22084-

>mRNA_Ecto-sp9_F_contig1158.1329.1 ID=mRNA_Ecto-sp9_F_contig1158.1329.1|Name=mRNA_Ecto-sp9_F_contig1158.1329.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1158:21004..22084- (Ectocarpus species9 EcSCA_722f female)
CTACGCGCACACCCTCAAGCAGTGGAGGCATCGCTTCAACCACTCGTTGG
ACCAGCTACGCGCACACCCTCAAGCAGTGGAGGCATCGCTTCAACCACTC
GTTGGACCAGGTTATGGCCCAAGGCTTCGACTCGGCCTTCGTCAGGTGCT
TCAACTACTACTTCGCCTACTGCGAGGCCGGCTTCGTCAGCCGCACGGAG
GGGCTCATGATGCTCACCTTCGCGAGGCCGGGGACAGCGGCGCTCGACCC
CAATGCCGTCACCTCGATACTCCTGCGGGATTAGATTTACCGTAGGTTAT
GGCCCAAGGCTTCGACTCGGCCTTCGTCAGGTGCTTCAACTACTACTTCG
CCTACTGCGAGGCCGGCTTCGTCAGCCGCACGGAGGGGCTCATGATGCTC
ACCTTCGCGAGGCCGGGGACAGCGGCGCTCGACCCCAATGCCGTCACCTC
GATACTCCTGCGGGATTAGATTTACCGTAG
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