mRNA_Ecto-sp9_F_contig11541.1312.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11541.1312.1
Unique NamemRNA_Ecto-sp9_F_contig11541.1312.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11541.1312.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K023_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 2.160e-87
Identity = 126/150 (84.00%), Postives = 138/150 (92.00%), Query Frame = 1 
Query:    1 VLGAARYGTSDSTIVSRKARLTYGTKMVNKYDESNPEHTKRMGHARFIGDALYLDKFSCYVEKGIDLPVGTDKEHTFHPVTDEQEEVSFDVCISLRPKADIEYLKDNGVAKKLSLLKTISAPIDMSVPMGTRGVSMQLSFGGTELGIKCT 450
            VLGAARYG SDSTIVSRKARLTYGTK V +YDE+N +HT R  HARF+GD LYLDKFSCYVEKG DLPVGTDKEHTFHPVTDEQ++VSFDVCISL+P+ADIEYLKDNGV+KKLSLLKT+SAPID +VPM  RGVSM+LSFGGTELGIKCT
Sbjct:   78 VLGAARYGASDSTIVSRKARLTYGTKYVTRYDENNKKHTDRQAHARFVGDGLYLDKFSCYVEKGTDLPVGTDKEHTFHPVTDEQDQVSFDVCISLKPEADIEYLKDNGVSKKLSLLKTVSAPIDRNVPMSKRGVSMKLSFGGTELGIKCT 227
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BLAST of mRNA_Ecto-sp9_F_contig11541.1312.1 vs.
Match: Heat (shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G266_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.070e-79
Identity = 126/150 (84.00%), Postives = 136/150 (90.67%), Query Frame = 1 
Query:    1 VLGAARYGTSDSTIVSRKARLTYGTKMVNKYDESNPEHTKRMGHARFIGDALYLDKFSCYVEKGIDLPVGTDKEHTFHPVTDEQEEVSFDVCISLRPKADIEYLKDNGVAKKLSLLKTISAPIDMSVPMGTRGVSMQLSFGGTELGIKCT 450
            VLGAARYGTSDSTIVSRKARLTYGTK +  YDE NPEHTKRM HAR+IG ALYLD FSCYVEKGIDLPVGTDKE TF+P+T+EQ  VSFDVCISL+PKA I+YLKDNGV K+LSLLKT+SAP+DMSVPM  RGVSMQLSFGGTELGIKCT
Sbjct:  439 VLGAARYGTSDSTIVSRKARLTYGTKTMTDYDEHNPEHTKRMKHARYIGGALYLDTFSCYVEKGIDLPVGTDKEETFYPLTNEQTAVSFDVCISLKPKAGIKYLKDNGVDKQLSLLKTVSAPMDMSVPMRKRGVSMQLSFGGTELGIKCT 588
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BLAST of mRNA_Ecto-sp9_F_contig11541.1312.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMC0_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 2.980e-66
Identity = 98/149 (65.77%), Postives = 121/149 (81.21%), Query Frame = 1 
Query:    4 LGAARYGTSDSTIVSRKARLTYGTKMVNKYDESNPEHTKRMGHARFIGDALYLDKFSCYVEKGIDLPVGTDKEHTFHPVTDEQEEVSFDVCISLRPKADIEYLKDNGVAKKLSLLKTISAPIDMSVPMGTRGVSMQLSFGGTELGIKCT 450
            +GAA +G S+S IV+RKARLTYGT+ V +YDE +P HT+R G AR+IG  LYL+KFSCYVEKG+DLPVGT ++HTFHPVT+ Q E+ FDVCISL+  ADIEY+KD GV  KL  LKT++ P+DMSV +  RGV M+L FGGT+LGIKCT
Sbjct:  139 VGAALFGRSESAIVARKARLTYGTRSVTRYDEEDPNHTRRKGQARYIGGTLYLEKFSCYVEKGVDLPVGTGRQHTFHPVTERQNEIEFDVCISLQTAADIEYVKDEGVNHKLCTLKTLTVPVDMSVRLSERGVVMKLYFGGTDLGIKCT 287
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BLAST of mRNA_Ecto-sp9_F_contig11541.1312.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CSW2_MYTGA)

HSP 1 Score: 53.5 bits (127), Expect = 2.030e-5
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 1 
Query:    1 VLGAARYGTSDSTIVSRKARLTYGTKMVNKYDESNPEHTKRMGHARFIGDALYLDKFSCYVEKGIDLPVGTD-KEHTFHPVTDEQEEVSFDVCISLRPKADIEYLKDNGVAKKLSLLKTISAPIDMSVPMGTRGVSMQLSFGGTELGIK 444
            V GA  +G + +TIVSRKA+ TYG K+   + E +P+  K     +  G     D FS +VE G  + VG      ++ P+  + EEV   + IS     D  Y  +       + L  I  P+  S  +  + + +Q++FGGTE+ ++
Sbjct:  446 VKGAVLFGHNPATIVSRKAKYTYGVKITRDFKEGDPQDKKY----QVKGRNKCSDVFSKHVEIGQTVKVGESLNPQSYFPLHSDVEEVVVPLYIST--DEDPSYTTEPSC----NYLGKIVVPLKGS-SVKDKEIVVQMTFGGTEMTVE 583
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11541.1312.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized2.160e-8784.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Heat1.070e-7984.00shock protein 70 n=1 Tax=Ectocarpus siliculosus Ta... [more]
Uncharacterized2.980e-6665.77protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.030e-530.20protein n=1 Tax=Mytilus galloprovincialis TaxID=29... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11541contigEcto-sp9_F_contig11541:2003..2452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 70
Ec32 orthologEc-16_002310.1
Exons1
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928409.7352672-CDS-Ecto-sp9_F_contig11541:2002..24521622928409.7352672-CDS-Ecto-sp9_F_contig11541:2002..2452Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11541 2003..2452 -
1692277861.792214-CDS-Ecto-sp9_F_contig11541:2002..24521692277861.792214-CDS-Ecto-sp9_F_contig11541:2002..2452Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11541 2003..2452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11541.1312.1prot_Ecto-sp9_F_contig11541.1312.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11541 2003..2452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11541.1312.1

>prot_Ecto-sp9_F_contig11541.1312.1 ID=prot_Ecto-sp9_F_contig11541.1312.1|Name=mRNA_Ecto-sp9_F_contig11541.1312.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=150bp
VLGAARYGTSDSTIVSRKARLTYGTKMVNKYDESNPEHTKRMGHARFIGD
ALYLDKFSCYVEKGIDLPVGTDKEHTFHPVTDEQEEVSFDVCISLRPKAD
IEYLKDNGVAKKLSLLKTISAPIDMSVPMGTRGVSMQLSFGGTELGIKCT
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mRNA from alignment at Ecto-sp9_F_contig11541:2003..2452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11541.1312.1 ID=mRNA_Ecto-sp9_F_contig11541.1312.1|Name=mRNA_Ecto-sp9_F_contig11541.1312.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11541:2003..2452- (Ectocarpus species9 EcSCA_722f female)
GTGCTGGGGGCGGCGCGGTACGGGACCAGCGACTCCACGATTGTATCTCG
GAAGGCACGCCTGACGTACGGCACCAAGATGGTGAACAAGTACGATGAAA
GCAACCCGGAGCATACCAAGCGTATGGGGCACGCCCGCTTCATCGGCGAC
GCCTTGTACCTCGACAAGTTCAGCTGCTACGTCGAAAAAGGGATCGACCT
ACCAGTGGGAACGGACAAGGAACACACGTTTCACCCCGTGACCGATGAAC
AGGAGGAAGTGTCGTTCGACGTGTGCATTTCGCTGAGGCCTAAGGCGGAC
ATCGAGTACCTCAAGGACAACGGGGTTGCCAAGAAGCTGAGCCTCCTGAA
AACTATATCTGCTCCCATCGACATGTCCGTCCCCATGGGTACACGGGGAG
TGTCCATGCAGCTGTCGTTCGGTGGCACCGAGCTCGGCATCAAATGCACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11541:2003..2452-

>mRNA_Ecto-sp9_F_contig11541.1312.1 ID=mRNA_Ecto-sp9_F_contig11541.1312.1|Name=mRNA_Ecto-sp9_F_contig11541.1312.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11541:2003..2452- (Ectocarpus species9 EcSCA_722f female)
GTGCTGGGGGCGGCGCGGTACGGGACCAGCGACTCCACGATTGTATCTCG
GAAGGCACGCCTGACGTACGGCACCAAGATGGTGAACAAGTACGATGAAA
GCAACCCGGAGCATACCAAGCGTATGGGGCACGCCCGCTTCATCGGCGAC
GCCTTGTACCTCGACAAGTTCAGCTGCTACGTCGAAAAAGGGATCGACCT
ACCAGTGGGAACGGACAAGGAACACACGTTTCACCCCGTGACCGATGAAC
AGGAGGAAGTGTCGTTCGACGTGTGCATTTCGCTGAGGCCTAAGGCGGAC
ATCGAGTACCTCAAGGACAACGGGGTTGCCAAGAAGCTGAGCCTCCTGAA
AACTATATCTGCTCCCATCGACATGTCCGTCCCCATGGGTACACGGGGAG
TGTCCATGCAGCTGTCGTTCGGTGGCACCGAGCTCGGCATCAAATGCACG
GTGCTGGGGGCGGCGCGGTACGGGACCAGCGACTCCACGATTGTATCTCG
GAAGGCACGCCTGACGTACGGCACCAAGATGGTGAACAAGTACGATGAAA
GCAACCCGGAGCATACCAAGCGTATGGGGCACGCCCGCTTCATCGGCGAC
GCCTTGTACCTCGACAAGTTCAGCTGCTACGTCGAAAAAGGGATCGACCT
ACCAGTGGGAACGGACAAGGAACACACGTTTCACCCCGTGACCGATGAAC
AGGAGGAAGTGTCGTTCGACGTGTGCATTTCGCTGAGGCCTAAGGCGGAC
ATCGAGTACCTCAAGGACAACGGGGTTGCCAAGAAGCTGAGCCTCCTGAA
AACTATATCTGCTCCCATCGACATGTCCGTCCCCATGGGTACACGGGGAG
TGTCCATGCAGCTGTCGTTCGGTGGCACCGAGCTCGGCATCAAATGCACG
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