mRNA_Ecto-sp9_F_contig1153.1306.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1153.1306.1
Unique NamemRNA_Ecto-sp9_F_contig1153.1306.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI)

HSP 1 Score: 818 bits (2114), Expect = 1.710e-283
Identity = 459/472 (97.25%), Postives = 464/472 (98.31%), Query Frame = 1
Query:    1 MDDRKALIAAVGEAAAAAPAGEGEEGSATRYESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTRVLEAVAPIVEQGRFLSSQXXXXXXXXXXXXXXXXXTREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXAKKNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDVVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVRAVAGK 1416
            MDDRKALIAAVGEAAAAAPAGEGEEGSATRYESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHN VWT+VLEAVAPIVEQGRFLSSQXXXXXXXXXXXXXXX  TREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXX   NNQASVSLAMEVLYA+ATLAHEFLADKERVAPRALV+TAV+LHD+VLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRG EGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALT LLEDAHPQVRAVAGK
Sbjct:    1 MDDRKALIAAVGEAAAAAPAGEGEEGSATRYESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNWVWTQVLEAVAPIVEQGRFLSSQXXXXXXXXXXXXXXXNSTREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXXXXNNQASVSLAMEVLYASATLAHEFLADKERVAPRALVDTAVYLHDIVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGTEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTDLLEDAHPQVRAVAGK 472          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE)

HSP 1 Score: 539 bits (1388), Expect = 6.120e-176
Identity = 278/308 (90.26%), Postives = 287/308 (93.18%), Query Frame = 1
Query:  493 SLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDVVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVRAVAGK 1416
            S  ++VLYAAATLAHEFLADKERVAPRALV+TAV+LHD+VLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMH +KGALLLLDFEDESSDSLRALLLRTFMSPVYLK SEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNIL+VLEGLHSQKK KGVDADLLRLYGPVMWRSLRVANPSVRAQ   +            GAA+YDATLQQQFVALT LLEDAHPQVRAVAGK
Sbjct:   38 SRQVQVLYAAATLAHEFLADKERVAPRALVDTAVYLHDIVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHAVKGALLLLDFEDESSDSLRALLLRTFMSPVYLKSSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILVVLEGLHSQKKAKGVDADLLRLYGPVMWRSLRVANPSVRAQGYLL---------SGVGAAAYDATLQQQFVALTDLLEDAHPQVRAVAGK 336          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: Condensin (II non structural maintenance of chromosomes subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM8_9STRA)

HSP 1 Score: 321 bits (823), Expect = 3.380e-94
Identity = 192/452 (42.48%), Postives = 255/452 (56.42%), Query Frame = 1
Query:  100 LLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTRVLEAVAPIVEQGRFLSSQXXXXXXXXXXXXXXXXXTREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXAKKNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDVVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQ------------YLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQ------------QQFVALTGLLED 1383
            LL  +KRH +RSD+ +L EV Q + +KEH R W   L  V PI E   +L       XX                 EGT  E     E A A         GA D                       A VS+++E++ A  TLA  FLADK+R AP +L+ T   LH ++L LQG +G AL+  IA+ CE WW  +RPG EHLV  L+P +L+R+L P A++ADV+R+   +GALLLLD+ED  ++  RALLLR F++P +L+   G+R LAS FGLHP+  + IHAV+ AQ+P A++AVLAAYGEVYFR WRGA+G             Y  ++E  C+Q LM                 VL+  H+Q++ KGVDA LLRLY P++WR+LRVANP VRAQA  +L  AFPLQDP   AA+ +ATLQ            +QF AL+ +++D
Sbjct:   34 LLALLKRHRARSDEYDLDEVIQALPRKEHERFWAAALALVTPITEGHLYLIDDEEDEXX--------------GSEEGTADE-----EDAPAA-------HGAVDK---------------------DAVVSISLELMDAITTLAGLFLADKKRAAPPSLLSTMAALHGILLYLQGAEGAALQTAIARACEAWWRAERPGGEHLVACLLPYLLLRALDPAARDADVRRLCDARGALLLLDWEDADAEGTRALLLRAFLAPAFLRGDAGRRFLASVFGLHPAFAARIHAVVSAQLPRARRAVLAAYGEVYFRAWRGADGXXXXXXXXXXXXXYAAEIEGACMQPLMXXXXXXXXXXXXXXARGVLDAFHAQRRQKGVDAALLRLYDPILWRALRVANPVVRAQAAALLARAFPLQDPDGPAAAAEATLQHXXXXXXXXXXXRQFDALSAIMQD 438          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: Condensin-2 (complex subunit g2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM42_9STRA)

HSP 1 Score: 313 bits (801), Expect = 1.900e-91
Identity = 177/443 (39.95%), Postives = 253/443 (57.11%), Query Frame = 1
Query:   97 SLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTRVLEAVAPIVEQGRFLSSQXXXXXXXXXXXXXXXXXTREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXAKKNNQASVSLAMEVLYAA--ATLAHEFLADKERVAPRALVETAVHLHDVVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVR--AVAG 1413
            +LL  V R+++++DD  L +  QTM+ K+ +++W  +   + P +E                             +R+G            G + +   P+ G                    A +   A V+ A   L     A+ +    +  +   P  L++  V LHDV+  L G+ GEAL+  I +VCE WW Q R GAE LV   +P ++ RSL  DA+EA VKR++ L+GALLLLD+E+E++   R LLL+ F+ P YLK ++G+RLL   FGLHPSLV +IH  +K+Q+P AKK ++ AYG+VYFR WR AEG YLE +E  C+QDLMHA +H ++P ++  + ++L+  H+ K+++ VDA LLRLY P++WRSLRVA+P+VRAQA  +LVDAFPLQDP  G     A LQ+Q   L  LL D  P VR  AVAG
Sbjct:   24 TLLNLVARNAAKNDDFALEDFLQTMTAKDQSKLWEEIASRLNPTIE-------------------LVAADGQEGEERDG----------DGGQEFVDTCPKVGKDQE------------EAWRAFRLLSAVVATAQATLQVCPPASASTSTSSSADSATPEGLLQVMVALHDVLFQLSGIDGEALQGAIVRVCEQWWKQGRGGAEFLVAQTVPYLVARSLEEDAREALVKRVYALRGALLLLDYEEEATGPFRELLLQCFLKPTYLKSADGRRLLTFLFGLHPSLVVDIHETVKSQLPYAKKKLVQAYGDVYFRAWRAAEGPYLEAIETGCVQDLMHAAVHCASPSLYATLRLLLQSFHANKRLREVDAMLLRLYDPILWRSLRVASPTVRAQATSLLVDAFPLQDPDMGTIEAAALLQRQLDVLQSLLLDPAPHVRVTAVAG 425          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: HEAT (repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEA4_ACACA)

HSP 1 Score: 283 bits (723), Expect = 5.780e-81
Identity = 177/444 (39.86%), Postives = 249/444 (56.08%), Query Frame = 1
Query:   94 ESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTRVLEAVAPIVEQGRFLSSQXXXXXXXXXXXXXXXXXTREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXAKKNNQ-ASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDVVLSLQGLQGEA----LRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVRAVA 1410
            E L+  VKRH +R D+ +L E+ +T  +K + ++W+ +   V+ IVE   F   +                    AKR    P++                         XXXXXXXXXXXX  AKK ++  +   A+E L A A LA  F+A K+R+AP +L ++   LH ++L +  ++G      L   IA++CE WW QDR   E LV   I  +++++L   AK A +KR++  + ALLLLDF+D+SS  L+ LLLR F+ P++L+ ++GK+ L   FGLHP  +  IH  +K Q+P   K++L AYGEVYF+ W+ A+G YL K+E  CLQDL+   +H     +   +  VL  +H QKK KGVD  LLRLY P++WRSL+VANP VR  A  +L DAFPLQDP +     D  LQ+QF     LL D  P VR VA
Sbjct:   19 EELVALVKRHRARGDNYDLKEIVETFPRKHYEQLWSALHVHVSAIVEGSTFTKPEANDEQQPQQAKKSNAKAKPAAKRGRGRPKKNDEEXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXKRAKKGSEDKTAETALEYLRAVALLASLFIASKDRIAPDSLFDSVALLHGILLDVLAIKGAGHALLLHNEIAQLCETWWKQDRTQKEALVPLTIFYLVLQTLEEGAKTATIKRLYDFRSALLLLDFQDDSSTQLKGLLLRCFIHPMFLRAADGKKFLVYLFGLHPPYIDAIHDTIKGQLPACPKSLLEAYGEVYFKAWKVAQGPYLLKLEYTCLQDLISCAVHVQNEAVVSGLRKVLRHIHEQKKQKGVDEMLLRLYEPIIWRSLKVANPMVRRNATVLLADAFPLQDPDSAQRETDELLQKQFNQFEALLTDDVPVVRCVA 457          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM40_9STRA)

HSP 1 Score: 256 bits (654), Expect = 9.350e-77
Identity = 134/271 (49.45%), Postives = 175/271 (64.58%), Query Frame = 1
Query:  598 LHDVVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVRAVA 1410
            +H+V+  L   +  A +  I K CE WWTQ R G E LVV L+P +L+RSL   A   DVKR++ ++ A  LLDFEDES DSL+ LLLR  + P+Y+  ++G+R LA  F LHP+ V ++H  +K QMP  ++ V AAYGEVYF+ WR +EG+   K+E  C+QDLMH  +HAS P M      VL    ++K+ +GVD  L RLY P++WRSL  ANP+VR  A   LVDAFPLQ+P A     DA+LQ+QF AL  LL D  P VR VA
Sbjct:    3 MHNVLFYLMVREAAACQMSIMKACERWWTQARAGREGLVVQLLPTLLMRSLEEGAAPGDVKRVYAVRSAFELLDFEDESIDSLKELLLRCVIHPLYVSRADGRRFLAFLFSLHPTFVDDLHDTIKNQMPSTRR-VHAAYGEVYFKAWRNSEGELTLKIERGCVQDLMHRGVHASLPAMFAATRQVLAAFINEKRSRGVDEMLDRLYEPILWRSLAAANPTVRRNAATALVDAFPLQNPEAARPVVDASLQKQFDALGALLSDPVPNVRVVA 272          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U8W1_POCDA)

HSP 1 Score: 242 bits (617), Expect = 3.850e-73
Identity = 127/262 (48.47%), Postives = 168/262 (64.12%), Query Frame = 1
Query:  634 GEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHAS---TPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVRAVA 1410
             E+L+  IA++CE+W+  +  G E L+    P +++RSL      +DVKR+ GL+  LLL+DF+D+SS+SL+ LL +  + P YLK  EG+R L+  FGL+P L  E H  +K Q+P     VL+ YGEVYFR WR A G YL+ +E  C+QDLM A +HA    T  M   +  VLE +H QKK +GVD  LLRLY P++WR+ +VANP VRA A  +L D FPLQ+P AG    D  LQ+QF  L  LL DAHP VRA A
Sbjct:    7 SESLQNDIAQLCELWFLNELEGKEELITQTFPYLIIRSLGRGLV-SDVKRVWGLRQCLLLMDFDDDSSESLKQLLHQCMIHPTYLKLEEGRRFLSYSFGLNPGLAKEFHKTIKNQIPYCTMNVLSLYGEVYFRAWRVASGAYLKVLEENCIQDLMFAAVHAQRTGTKSMASRLRKVLEYIHQQKKQRGVDEALLRLYQPIIWRAFKVANPMVRANAAALLTDIFPLQNPDAGNEEIDELLQKQFDILKDLLGDAHPTVRATA 267          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: condensin-2 (complex subunit G2-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F554239)

HSP 1 Score: 256 bits (653), Expect = 1.260e-71
Identity = 157/443 (35.44%), Postives = 231/443 (52.14%), Query Frame = 1
Query:   94 ESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTRVLEAVAPIVEQGRFLSSQXXXXXXXXXXXXXXXXXTREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXAKKNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDVVLSL-QGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHAS---TPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVRAVA 1410
            ++ L F+++H+S++D  N+ E  QT+ KK+H R+W+ + +    ++      S +                   +++ EG +                                                 ++   +E +      A   + +K    P A +ETA  LH +++SL +G   E+L+  IA++CE+W+  +  G E L+    P +++RSL      +DVKR+ GL+  LLL+DF+D+SS+SL+ LL +  + P YLK  EG+R L+  FGL+P L  E H  +K Q+P     VL+ YGEVYFR WR A G YL+ +E  C+QDLM A +HA    T  M   +  VLE +H QKK +GVD  LLRLY P++WR+ +VANP VRA A  +L D FPLQ+P AG    D  LQ+QF  L  LL DAHP VRA A
Sbjct:   18 QAFLRFIEQHNSKNDSFNIEEALQTLPKKDHERLWSGLRDMTRRLLLTNPVGSREND-----------------DSEEEGPS----------------------------------------------EWPALLSYLEGVTTVGLCALVVMPEKPTHVPSAFLETAAILHGLLMSLPEG--SESLQNDIAQLCELWFLNELEGKEELITQTFPYLIIRSLGRGLV-SDVKRVWGLRQCLLLMDFDDDSSESLKQLLHQCMIHPTYLKLEEGRRFLSYSFGLNPGLAKEFHKTIKNQIPYCTMNVLSLYGEVYFRAWRVASGAYLKVLEENCIQDLMFAAVHAQRTGTKSMASRLRKVLEYIHQQKKQRGVDEALLRLYQPIIWRAFKVANPMVRANAAALLTDIFPLQNPDAGNEEIDELLQKQFDILKDLLGDAHPTVRATA 394          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: Putative (condensin n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EH25_EMIHU)

HSP 1 Score: 243 bits (621), Expect = 1.010e-70
Identity = 127/298 (42.62%), Postives = 178/298 (59.73%), Query Frame = 1
Query:  568 PRALVETAVHLHDVVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQ-----------------YLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVRAVA 1410
            P  L   A  LHD++  L   +   L+  I ++CE WW  +RPG + LV   I  +LV +L   A  ADVKR+  L+ AL +LD+ D S  +L+ LLL   + P+ L+C+EG++LL   FGLHP  ++E+H  +KAQ+P  +K++   YGE+YFR WR A G                  YLE++E  CLQDLM   +HA++  M   +  VL   H+QK+ +GVD+ LLRLY P++WR+L+VANP VR  A  +L++AFPLQDP+      D  LQ+QF AL  LL+D    VR VA
Sbjct:  100 PEKLQAVAEALHDIIFDLHDPRASTLQGAIVELCESWWLAERPGRDELVPQTISYLLVSALHEAATAADVKRLWALRSALGVLDYADPSVAALKRLLLHCMIKPLVLRCAEGRKLLVYLFGLHPPFIAELHRAIKAQIPVCRKSLRDLYGEIYFRAWRAASGASSXXXSGGARGGSSVCAYLERLEEGCLQDLMFHAVHAASANMATALRQVLAYTHAQKRQRGVDSMLLRLYEPILWRALKVANPHVRRNAATLLIEAFPLQDPTLPLTQLDEALQRQFDALAALLKDDSVPVRVVA 397          
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Match: Uncharacterized (protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RMC3_TRIAD)

HSP 1 Score: 252 bits (643), Expect = 3.160e-70
Identity = 129/291 (44.33%), Postives = 183/291 (62.89%), Query Frame = 1
Query:  550 DKERVAPRALVETAVHLHDVVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHA--STPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTGLLEDAHPQVRAVAGK 1416
            DK+ + P +L E A  LH +++SL       L+  I+++CE+WW++D    E L+ H++P +L+R L PDA   D+KR+  ++  LLLLD++D S+DS + LLLR +M P++LK  EG+R+L   FGLH  L+ +IHA +K  +P + +++   YGEVYFR WR + G Y EK+E  C+QDLMH  IHA  S P +   +  +L+  H +KK  GVD  LL LY P++WRSL+VAN  VRA A  +L  AFPL DP       D  +Q+QF A   LL+D  P VR V  K
Sbjct:  107 DKDGIEP-SLHEIASILHGILMSLPEA-AITLQDSISRICELWWSKDFSAKEELIPHMVPYLLMRCLQPDAVLKDIKRLWQIRNCLLLLDYDDPSADSTKLLLLRCYMQPLFLKTDEGRRILTYTFGLHVPLIEDIHATIKNNIPSSSRSLQEYYGEVYFRAWRSSSGPYREKIENFCIQDLMHHAIHARISRPSIAAALKRILDQFHREKKQSGVDKMLLTLYQPIIWRSLKVANAIVRANAAALLFSAFPLHDPDGANEDIDILMQRQFDAFADLLQDPCPNVREVTVK 395          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1153.1306.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.710e-28397.25protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.120e-17690.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Condensin3.380e-9442.48II non structural maintenance of chromosomes subun... [more]
Condensin-21.900e-9139.95complex subunit g2 n=2 Tax=Monodopsidaceae TaxID=4... [more]
HEAT5.780e-8139.86repeat domain containing protein n=1 Tax=Acanthamo... [more]
Hypothetical9.350e-7749.45protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]
Uncharacterized3.850e-7348.47protein n=1 Tax=Pocillopora damicornis TaxID=46731... [more]
condensin-21.260e-7135.44complex subunit G2-like n=1 Tax=Pocillopora damico... [more]
Putative1.010e-7042.62condensin n=1 Tax=Emiliania huxleyi TaxID=2903 Rep... [more]
Uncharacterized3.160e-7044.33protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RMC... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1153contigEcto-sp9_F_contig1153:3504..10995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score825.1
Seed ortholog evalue1.7e-236
Seed eggNOG ortholog2880.D8LF93
Preferred nameNCAPG2
KEGG koko:K11492
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273
EggNOG free text desc.inner cell mass cell proliferation
EggNOG OGsKOG1949@1,KOG1949@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons12
Model size1417
Cds size1416
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1153.1306.1prot_Ecto-sp9_F_contig1153.1306.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1153 3504..10995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928408.4107192-CDS-Ecto-sp9_F_contig1153:3503..36011622928408.4107192-CDS-Ecto-sp9_F_contig1153:3503..3601Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 3504..3601 -
1692277861.160686-CDS-Ecto-sp9_F_contig1153:3503..36011692277861.160686-CDS-Ecto-sp9_F_contig1153:3503..3601Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 3504..3601 -
1622928408.423734-CDS-Ecto-sp9_F_contig1153:4131..41801622928408.423734-CDS-Ecto-sp9_F_contig1153:4131..4180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 4132..4180 -
1692277861.1734562-CDS-Ecto-sp9_F_contig1153:4131..41801692277861.1734562-CDS-Ecto-sp9_F_contig1153:4131..4180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 4132..4180 -
1622928408.4646144-CDS-Ecto-sp9_F_contig1153:4634..47241622928408.4646144-CDS-Ecto-sp9_F_contig1153:4634..4724Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 4635..4724 -
1692277861.181716-CDS-Ecto-sp9_F_contig1153:4634..47241692277861.181716-CDS-Ecto-sp9_F_contig1153:4634..4724Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 4635..4724 -
1622928408.4766195-CDS-Ecto-sp9_F_contig1153:5267..53571622928408.4766195-CDS-Ecto-sp9_F_contig1153:5267..5357Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 5268..5357 -
1692277861.18987-CDS-Ecto-sp9_F_contig1153:5267..53571692277861.18987-CDS-Ecto-sp9_F_contig1153:5267..5357Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 5268..5357 -
1622928408.4895375-CDS-Ecto-sp9_F_contig1153:5858..59271622928408.4895375-CDS-Ecto-sp9_F_contig1153:5858..5927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 5859..5927 -
1692277861.1976423-CDS-Ecto-sp9_F_contig1153:5858..59271692277861.1976423-CDS-Ecto-sp9_F_contig1153:5858..5927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 5859..5927 -
1622928408.5058382-CDS-Ecto-sp9_F_contig1153:6777..69341622928408.5058382-CDS-Ecto-sp9_F_contig1153:6777..6934Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 6778..6934 -
1692277861.205732-CDS-Ecto-sp9_F_contig1153:6777..69341692277861.205732-CDS-Ecto-sp9_F_contig1153:6777..6934Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 6778..6934 -
1622928408.5280306-CDS-Ecto-sp9_F_contig1153:7419..74911622928408.5280306-CDS-Ecto-sp9_F_contig1153:7419..7491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 7420..7491 -
1692277861.2137702-CDS-Ecto-sp9_F_contig1153:7419..74911692277861.2137702-CDS-Ecto-sp9_F_contig1153:7419..7491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 7420..7491 -
1622928408.5421846-CDS-Ecto-sp9_F_contig1153:7795..79231622928408.5421846-CDS-Ecto-sp9_F_contig1153:7795..7923Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 7796..7923 -
1692277861.2218585-CDS-Ecto-sp9_F_contig1153:7795..79231692277861.2218585-CDS-Ecto-sp9_F_contig1153:7795..7923Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 7796..7923 -
1622928408.5554008-CDS-Ecto-sp9_F_contig1153:8278..84341622928408.5554008-CDS-Ecto-sp9_F_contig1153:8278..8434Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 8279..8434 -
1692277861.2299836-CDS-Ecto-sp9_F_contig1153:8278..84341692277861.2299836-CDS-Ecto-sp9_F_contig1153:8278..8434Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 8279..8434 -
1622928408.5923548-CDS-Ecto-sp9_F_contig1153:8984..92211622928408.5923548-CDS-Ecto-sp9_F_contig1153:8984..9221Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 8985..9221 -
1692277861.2386067-CDS-Ecto-sp9_F_contig1153:8984..92211692277861.2386067-CDS-Ecto-sp9_F_contig1153:8984..9221Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 8985..9221 -
1622928408.604506-CDS-Ecto-sp9_F_contig1153:9981..101201622928408.604506-CDS-Ecto-sp9_F_contig1153:9981..10120Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 9982..10120 -
1692277861.2465997-CDS-Ecto-sp9_F_contig1153:9981..101201692277861.2465997-CDS-Ecto-sp9_F_contig1153:9981..10120Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 9982..10120 -
1622928408.6222966-CDS-Ecto-sp9_F_contig1153:10864..109951622928408.6222966-CDS-Ecto-sp9_F_contig1153:10864..10995Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 10865..10995 -
1692277861.254712-CDS-Ecto-sp9_F_contig1153:10864..109951692277861.254712-CDS-Ecto-sp9_F_contig1153:10864..10995Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1153 10865..10995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1153.1306.1

>prot_Ecto-sp9_F_contig1153.1306.1 ID=prot_Ecto-sp9_F_contig1153.1306.1|Name=mRNA_Ecto-sp9_F_contig1153.1306.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=472bp
MDDRKALIAAVGEAAAAAPAGEGEEGSATRYESLLVFVKRHSSRSDDLNL
GEVFQTMSKKEHNRVWTRVLEAVAPIVEQGRFLSSQEEEESDDEEEREEE
ENNTREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGDDGGRGGGS
SGDKNAKKNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHL
HDVVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSL
SPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSE
GKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAE
GQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDAD
LLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQ
QFVALTGLLEDAHPQVRAVAGK
back to top

mRNA from alignment at Ecto-sp9_F_contig1153:3504..10995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1153.1306.1 ID=mRNA_Ecto-sp9_F_contig1153.1306.1|Name=mRNA_Ecto-sp9_F_contig1153.1306.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7492bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1153:3504..10995- (Ectocarpus species9 EcSCA_722f female)
ATGGATGACAGGAAAGCGCTGATTGCCGCAGTCGGTGAGGCGGCGGCAGC AGCGCCTGCTGGAGAAGGCGAGGAGGGCTCAGCAACGCGATATGAGAGTC TCCTGGTCTTTGTCAAGCGCCATTCCTCGAGGTGAGCTTGGTTTAATGAT GTGCTACTCCTGTTGCCCTGGTGCTGCAAGGATACTTACTGCTCCAACGT GCTGTTGAAATAAATCGCCGTTGTTTTGCTGTTGCGGGTCTGTCCGTTGT GCTCGGCACACGTCGACGAACAACTTATTTGTTTGGCTCTGCTGTTTGGG CTTGTCGAGAGCTCTCTGTGCCGTGCTGTGCTGTGCTGCAGAGCGCACGC CGGTTGTACTCTCCGCCGGGATTCTTGCTGCTGTAGCAGCTTACGAAATA GCATGCCTAGATGTTTGCGGATGGGTCATGCGGCGTATAGACCTGTGGCA CAATGGTTGTGTCCCTGTTTAGACTTACGTAGCAAACCTTGCAATTATAC AAACATGTCGACAGCATGTCCCATGTCCCGTACACCTTAGGGTGACAAGG TGCCATTTGACCCGTGCGGGCTCTCCCCTCGAGCAAGAGTTTTGTTGGTG TGGTGGTTTGTGTCGGTGTCGGGCCATGGCTATATCCTATCCGTTCGCAT TTTTTTACTGGGAAAAGACGCTTCCCTGCTTCCAAGGGGAGGCACACGTC GTGCATCGACTGCTGTGTACTTCAAGCTTATCACAAGGCCGCGGAATTGC TTAAAGTGTGAAAGTCTGGTTGGTCTGCAAACCTTGGTAACCAAGATGGT ATCACATGCACCTGGTGTCTTCGTACGATGTCTATCCTGCACGCTATGCA TGTGTACCGAACGCATGCCATGCAGGAGCGATGACCTGAACCTCGGGGAG GTGTTCCAGACCATGTCAAAGAAGGAACACAATCGGGTGTGGACCCGGGT CCTGGAGGCCGTGGCGCCGATCGTCGAACAGGGAAGGTTCTTGTCGTCCC AGGAAGAGGAAGAGGTGAGCGTATTCCCTGTGTTGTGACGGTCTCAGTCG TAGCTCTCTGGGTGTTCATACTCCCGGTCTCTGTAACCCTTCTTCAACGC CCCGCTTTGCAACGAAGACTTGTGCTACACGCGTACATAAACACGCGCAG TTCTGTTCGAGGCAATATGGCCAGCGAAGCAGTGCAAGGACCTAGTCTCG ACTTGGCGAGGAAAGAGGAGCAGCAGCGTCGACAGCAGAAGTTGCCACTA CCGCTGCTCTAATAGTTGTTGTGAACCCAACATTGTTGCGCGAATTCGTG CGTGTCGTCCAGCAAGGTGTTGACGAGCGCTTGATTGTGAGTACACACAG GAGTTACTGAGCCTGTCACGCTTTGAGGGTGAAGGCATGGATTGCAGAAG AATTCTCCTGCGCATCTCCAGTCGTCAGCTATTCAGTGGGAAACGGCACG ACTACTGTAGGACAGGAGTTACGGCAAGGCAGATCGGAGCTCAGCGAAGA GTCGGGGGAAGCTCATCTCATTCTTCACTACGACTCGAGCTCGCGAACCA TGAAGCCATCGTCTGGCTTTGGGCGTTTGCCTACGACATGCCACCGAGGC CACCAAAGTGTCCAACTGTCCAACCAAGCAAACGTCGACCTCCAAACTTC TCTGCGTTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCT CTCTCTCTCTCCCTCTTTCTCTCTCTCCCTTTCTCTCTCTCTCTCTCCCT TTCTCTCTCTCTCTTTCTCGGCAGAGTGACGACGAGGAAGAAAGGGAGGA GGAGGAAAACAACACCAGAGAAGCAAAGAGAGAAGGCACTACGCCTGAGC GGCCGTCTACCCCGGAGAGCGCCGGAGCCCAGACGATGCCGCGCCGGCCA CGTCGAGGAGCGGCCGACAGTGGCGGCGACGATGGCGGGAGGGGCGGTGG AAGCTCCGGCGACAAAAACGCGAAGAAGAACAACCAAGCAAGCGTTTCAC TTGCGATGGAGGTCGGTATTCCTGGCTGCTGTGTATCGTGTGAATGATTA GGTACCCGCTGGTGTGTGTTTTACTCGGCTGGGGTTCGCGCCTTTGTCTT GCTGCCGACCGTCGCGTGTATTCTGCTACCGTACATGTACCAGCAGTGGC GGCGTAGCTGTCTTGCGAGGCCTCCATTCCGTCGGTGCCTACGGAGGTTC TTTGTGGCCATGTTTAACTGCGCGGCAAGGGGGTCTGAAATATGCCCCTC GCGTGGCGCGCGTTTTTTTGGGGGAGCAGGAAAAAGAATGCGGGGCACAC TCGACATGTAGTTTTTCGTCTGCGCATCCATGTCTCTCCTTCCGAAAGTT CGGTGTGCCTCCCTTTGCTTTGGGCATTTCAACAACAGACACGAGCCTTG TGCAAAGCTGCGTTAGGCTTCTTCTACATACCACATGCCTACCATATGAT GCGCACGCGCACAAGCTCGTAGCTCACATTCTGTGTCTTACAACGTCTGC ACAACCTTGCGCGGGGGTTACGCGGACGGGGGGGGGGGGGTCGTTTTCAC GACAAGTACAGGTGCTTTACGCCGCAGCGACGCTTGCCCATGAGTTCCTG GCCGACAAGGAGCGCGTCGCGCCACGGGCGCTGGTAGAGACGGCGGTGCA CCTGCACGACGTCGTACTGTCGCTGCAGGGGCTGCAAGGGGAGGCTCTCC GGAGGGTCATCGCTAAGGTGAACGTGCCAGCAGTAGCGACAACAGCAGGT GCTTTGGAGTTATGTTGTTGTGTTTAGGAAAATGTTGATATAAAAAGAGA GAGGGTGGGACCTGAGAGCAAGGAACATCATCGCACTTTTGAGCTTGCTC CGTTTGGGGGGCGCGGTCTTCATCAATCGCAGAGGTGAAGGAGACGATCG TGTTTTTCAAGAGCAAGCAAGTACGGGAGGAACTGGCGCTAAAAAAGTAT AGACGACGTCGTCCTTTGACACTTCTGTAACATTCGTCTGTTCTGCTGTG TCTGCCGCCGCCGCCGCCGCCATGGCCTTGTCCCGCCGCCGCGAAAAAAT CAACCAACCGATGGATCGAAAGGTGTGCGAGATGTGGTGGACGCAGGACC GGCCCGGGGCGGAGCACCTGGTGGTGCACCTGATACCGGTGATGCTCGTC CGATCCCTTAGCCCGGACGCCAAGGAGGCGGACGTGAAGAGGATGCACGG GTAAGAGTTGTCCGCATTTCACCGCCATTCGTGTATCGTCGTGGGATGTA TGACTACGGTGTGGGGGTCCTGGCTATAGAGTTGCCAGCAGTAGTGTGCC GCCAATCGTTGCATCGTACAATGTGAAGCAATGGCGGTACCCTCTTGCTC GGCCGGCTCGCTCGCCCATCTCCCTCTTGTTTGATGGTATCTACGAAGTT GGAGCGGTTTCGCTCTTTGTCCGTGTTCTGTTCTTGAAGTTGGCGTTCTG GTTCTCTCGTCTACCCCGCGTATATATTCCGTCTTTGCCTCCCCCCTCGC TCAGGTTGAAGGGAGCGCTGCTGCTCCTCGATTTCGAGGACGAGAGCAGC GACAGCCTCAGGGCGCTGCTACTCAGGTTCGTCGGCTGGCATTGGAATGA CTCTTGTGCGCGTACAGTACACGCAAACGGGTCTTGTTGTGTACCTTCAA GCTTGTTTCGGGGTGCAGGCCGATGCTTGCTATCGTGTGGTGTTCCCGCC CGTGTGGGTACTACCGGGGTTGCCAGTCCCCCCCCCCTGTCCTGTCTGAC CGCACCGCTGCCTCATGTTGATGCTATATATTGCCCGTGCCTGTCACTTT TCTACATACAAGCATGGTTTTGGGGATCCCTCGAGCCAGGTTATGTACGC GGGGACATACCAGACGCGAGTAAAAATGACGTCGTTGTCGGGTGTCCCGC TGCACTTTTCGTTCATTCGGGCCGTTGCAACACGAGCAAACCTCCGTATG TTTCTTTCCCGAACGAACCTCTGTTTTTGCGCCAGTACGACACGAGCCTA CTCCCCGTACGTTTTCCCCAAACGAACCTTTTGCCGACAACGATGACCGT CGACGGTGCAGGACGTTCATGTCCCCGGTGTACCTCAAGTGTTCCGAGGG TAAACGCCTACTTGCTTCGTTCTTCGGCCTGCACCCGTCCCTCGTGTCCG AGATTCACGCCGTCATGAAGGCGCAGATGCCTGGGGCCAAGAAGGCCGTG CTCGCCGCCTACGGGGAGGTGAGTTGGTTGGCGGGCGCCGTGAGGGCCGG GATTTTTTTTATCTCGATACAGAGTACTTGTTCGTTCGCCGGTCTTTGGA CATCCGAAGGGGACTCAGGGATCCTTTACCCACGGCTCGAAGAGATCGAG AGATCAGGTTTAGGTTTATCCATGAAATTAGTACTGGATCGAGGTGTGCT GAAGCAGATACTGCTACGGGCGTACGTTGTTTTTGTATGACTGGTTTTAA AAACCACCGAAAGAGCGCCCAGCGATCACACACGAGAAGCACAAGAACGG TTGCTAGGTGTTCTACAAGAAGATTTCTTCGGTTGTTGCACAGAGCAGCG GTTTGGGCTCGTCTCCACCAGCATACAGCATCACGCAGACTACCCCCGCA CGCCTTCTCTTACGTGAAGGTATCAACACCGCAACTCTAAATCCAAGACA AAACAGGCGACACGGCGGGTGCTCATATGTGCCAGTTCCCCTTCGACTGC GTGGCCCCAGCAACAGATCTGGTCGTGCCAACGCGCGTGTCGTTACGCCA TGGCGTCGTTTTCTGTTTTTTGGCCTCCGAATATCTTGGGTTTAGACTAG AAATCGAGTACCGGGCTTGTCCTCACTCCCTTAAATCGTTTGGGTCGTGA GTAAAACATGAGAGCTCTCTCCGGGAGTGTAGGCAAGATTTCATGTGTGT CCGAGGTTGTTTTTTTGAATCCTTGGTATCGTTCGCTGTTCTGCCGATTG TTGCACAGATCCGACGACCTGTGACCTCTACAACAACATGGAATTATTTG TCATGCTCGTGTCACGTGTGCTTACTTGTTTGTTTGTTTGTTTGGGCGTG CATTCCATCCATCCGCAGGTGTACTTTCGAGTGTGGAGGGGGGCGGAGGG ACAGTACCTGGAGAAGGTGGAGATGCTCTGCCTGCAGGTGGGCGTTGACT TTGGTGTTGTGTGAGTTTTGCTAACAACGTGTCGTAGCATTGTTGCTGTT GTTGAGCTGCTGCCTGTGGTCCATGTCGTTTTGCTACGGCTGCCCTTGTT GTTGTTGTGTGTTACTGTTGGTGCTACTGCGGATGTTTTGCGGCGGCTAT CTGTTGCCAAACGCCTTGTGGTTTCCCTTCGTTTTCCTGTAGCATCGTCG TACAAGTGTGTATTTTGCTCGACGGGAAGGAAGGCCATACAGACAACCTC CTGGGCTTCTTGTTTCGACTTTCGAACCCTTGCATTCCGTTTCGTGTCGA GCAAGAACCTGTACGGATGCCTGACCTTCTCTTGTCGTTGTTGCTGGTTG TTCAGTTCAAAATACAGCCTGGTATCTACATCCCACGGTTCTCATTTACC AACTCGAGTATGGACCACGAACCGGCCGGTAGCTGAGCGCGGTGTTGACA TCGGCCGCCCCCCTTTGCTGCACGTTGTTTGTCTGCAGGACCTGATGCAT GCATGCATTCACGCCTCTACGCCAAAGATGCACCAGAACATCCTCATCGT CCTGGAAGGGCTGCATTCGCAGAAGAAGGTCAGACTTCAGGGCCCGCGGG GGGGGGGGGGGGGGATAGGTGTGGCCCATTTGAATGGTAGAAATTGCGTC GGTCACAAGCAGGCTTTAGTTTTTTGGTGGTGTTTCTTGGGCTCAAGAAC ATCCAAGGTTTGTCGGAATTTACAAGCTTCGACCTTGTGACTCAAGAGCA CCAGGACCTGTTGCCCACCTCGTTTGGTGACTTTGCATTCATTATAACCG AGGCGTGGCCGGTACTCGTGGGGTTGATGGAAGTAACCCGTCGTTGATAG AATTGGCACGGCTTGCCGTCAGTCCTCCAATCCTTTGGCTTGCTTCCTGC GCCCCTACTCTCTCCAGCTCGTGATCAGCCTTCAAGGAGTATCCAACGCT GGTTGAAACTGTAAAGGAAAGGGTTCTACCCTCTTTTCCATAACCCCGAT TAAGGGCTCTTCCCTATGCCGTCACCCCGCATACCCGCTGTCGCCTCTCT TGGGTTTCCATGAAGACACGAATGTGCTGATGCTGCTGTGTATCGTTGAC GTTGATCACCGCCGCCGCCAGGTGAAAGGGGTGGACGCTGATCTCCTCCG GCTGTATGGTCCGGTCATGTGGAGGTCTCTCCGCGTCGCCAACCCCTCCG TTCGCGCACAGGTGAGCTAGGAGCCTTAACCCTTTGCCACGCTGCGCCTT AACCCTTTGCCACGCTGCGATTGTAGTGCTGTTGTTGGTGGAGGCGATGG TCAGCAATCGGAGAAACACAAGGAATACATACCTAACTCGGTAGCAGCAG GCAGTGGTGTCTTGGATGTTGCCGCTATTTAAACGGTCAGTCTGCCAACA TATGAGCATAGGCCACTCCCCATGTAGGTTCTCGGTCCCACTCGGAACGT GTCAGATGTAACGCGGCTTTCCCCGCAGGAGTGTAGAGGGGAACGCAAAA TGTATGGTATGTGCGGTCGTCCTACTGCTGGGTCGGTTGATCTCCGAGTG GTGAGAGGTCGATGGTTTGTTTCTATGGCAGCGGTCATCTCGTTTTCACT CGGTTTTAATGTGTACGTTTTGCTTGCGTTTTTGTGTTCTCGTTCTTGTT CCGCGTTTTGGTCAGGCCTGCCAGGTGCTCGTGGACGCCTTCCCTCTGCA AGACCCCTCCGCAGGCAAGCTGTTCTGCGTCACGTTTCAAGTGGCAATCA ATGCCGTTTTCATTTTCCTTGTCCCTCGTACAGTAGGATGGTTTCCCTCT ATTTTGCTTCTCCTATCAAGGCAGCCACCTTGGTACGAACAATTGTTTTT CCCCACTACTGTGCAGAATAGTAATTGCCCTGCTCACGCAGGGCTACCTC CATTCCGGGGTGGGCCCGCTGTCCTTTGAACGTGCGTGGTTGGTATCGAC AAAGTGTTCTCTAAATTGAGCGGCACAAGACATGCTTGCGTTGCGCGACC AGTCGGTTGTGGGTTTGCTCCACTCAGAGCTTATGGTTTGAGTGCTGTAG TCCCGTGTCAAACACGCATCAGGTGATGCGTTCAGCGGCGTGTGGCGTGG GATGGCTCGATCGCCAAGTTCGAGATCAAGCCAAAGACGTCACGTCGCTC TAAGAAAATGATGCATGTTGCTTCTGTTTCTGTGGTTGTTTCCTCCCCCC CCCCCTTCTCTGTCCTTTTCCGCCACGGGTACGTTCACGAGCAGGCGCGG CTTCCTACGACGCCACCTTGCAGCAGCAGTTCGTCGCTCTCACCGGTCTC CTTGAAGACGCACACCCCCAAGTCAGGGCTGTCGCCGGCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1153:3504..10995-

>mRNA_Ecto-sp9_F_contig1153.1306.1 ID=mRNA_Ecto-sp9_F_contig1153.1306.1|Name=mRNA_Ecto-sp9_F_contig1153.1306.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2832bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1153:3504..10995- (Ectocarpus species9 EcSCA_722f female)
ATGGATGACAGGAAAGCGCTGATTGCCGCAGTCGGTGAGGCGGCGGCAGC
AGCGCCTGCTGGAGAAGGCGAGGAGGGCTCAGCAACGCGATATGAGAGTC
TCCTGGTCTTTGTCAAGCGCCATTCCTCGAGATGGATGACAGGAAAGCGC
TGATTGCCGCAGTCGGTGAGGCGGCGGCAGCAGCGCCTGCTGGAGAAGGC
GAGGAGGGCTCAGCAACGCGATATGAGAGTCTCCTGGTCTTTGTCAAGCG
CCATTCCTCGAGGAGCGATGACCTGAACCTCGGGGAGGTGTTCCAGACCA
TGTCAAAGAAGGAACACAATCGGGTGTGGACCCGGGTCCTGGAGGCCGTG
GCGCCGATCGTCGAACAGGGAAGGTTCTTGTCGTCCCAGGAAGAGGAAGA
GGAGCGATGACCTGAACCTCGGGGAGGTGTTCCAGACCATGTCAAAGAAG
GAACACAATCGGGTGTGGACCCGGGTCCTGGAGGCCGTGGCGCCGATCGT
CGAACAGGGAAGGTTCTTGTCGTCCCAGGAAGAGGAAGAGAGTGACGACG
AGGAAGAAAGGGAGGAGGAGGAAAACAACACCAGAGAAGCAAAGAGAGAA
GGCACTACGCCTGAGCGGCCGTCTACCCCGGAGAGCGCCGGAGCCCAGAC
GATGCCGCGCCGGCCACGTCGAGGAGCGGCCGACAGTGGCGGCGACGATG
GCGGGAGGGGCGGTGGAAGCTCCGGCGACAAAAACGCGAAGAAGAACAAC
CAAGCAAGCGTTTCACTTGCGATGGAGAGTGACGACGAGGAAGAAAGGGA
GGAGGAGGAAAACAACACCAGAGAAGCAAAGAGAGAAGGCACTACGCCTG
AGCGGCCGTCTACCCCGGAGAGCGCCGGAGCCCAGACGATGCCGCGCCGG
CCACGTCGAGGAGCGGCCGACAGTGGCGGCGACGATGGCGGGAGGGGCGG
TGGAAGCTCCGGCGACAAAAACGCGAAGAAGAACAACCAAGCAAGCGTTT
CACTTGCGATGGAGGTGCTTTACGCCGCAGCGACGCTTGCCCATGAGTTC
CTGGCCGACAAGGAGCGCGTCGCGCCACGGGCGCTGGTAGAGACGGCGGT
GCACCTGCACGACGTCGTACTGTCGCTGCAGGGGCTGCAAGGGGAGGCTC
TCCGGAGGGTCATCGCTAAGGTGCTTTACGCCGCAGCGACGCTTGCCCAT
GAGTTCCTGGCCGACAAGGAGCGCGTCGCGCCACGGGCGCTGGTAGAGAC
GGCGGTGCACCTGCACGACGTCGTACTGTCGCTGCAGGGGCTGCAAGGGG
AGGCTCTCCGGAGGGTCATCGCTAAGGTGTGCGAGATGTGGTGGACGCAG
GACCGGCCCGGGGCGGAGCACCTGGTGGTGCACCTGATACCGGTGATGCT
CGTCCGATCCCTTAGCCCGGACGCCAAGGAGGCGGACGTGAAGAGGATGC
ACGGGTGTGCGAGATGTGGTGGACGCAGGACCGGCCCGGGGCGGAGCACC
TGGTGGTGCACCTGATACCGGTGATGCTCGTCCGATCCCTTAGCCCGGAC
GCCAAGGAGGCGGACGTGAAGAGGATGCACGGGTTGAAGGGAGCGCTGCT
GCTCCTCGATTTCGAGGACGAGAGCAGCGACAGCCTCAGGGCGCTGCTAC
TCAGGTTGAAGGGAGCGCTGCTGCTCCTCGATTTCGAGGACGAGAGCAGC
GACAGCCTCAGGGCGCTGCTACTCAGGACGTTCATGTCCCCGGTGTACCT
CAAGTGTTCCGAGGGTAAACGCCTACTTGCTTCGTTCTTCGGCCTGCACC
CGTCCCTCGTGTCCGAGATTCACGCCGTCATGAAGGCGCAGATGCCTGGG
GCCAAGAAGGCCGTGCTCGCCGCCTACGGGGAGGACGTTCATGTCCCCGG
TGTACCTCAAGTGTTCCGAGGGTAAACGCCTACTTGCTTCGTTCTTCGGC
CTGCACCCGTCCCTCGTGTCCGAGATTCACGCCGTCATGAAGGCGCAGAT
GCCTGGGGCCAAGAAGGCCGTGCTCGCCGCCTACGGGGAGGTGTACTTTC
GAGTGTGGAGGGGGGCGGAGGGACAGTACCTGGAGAAGGTGGAGATGCTC
TGCCTGCAGGTGTACTTTCGAGTGTGGAGGGGGGCGGAGGGACAGTACCT
GGAGAAGGTGGAGATGCTCTGCCTGCAGGACCTGATGCATGCATGCATTC
ACGCCTCTACGCCAAAGATGCACCAGAACATCCTCATCGTCCTGGAAGGG
CTGCATTCGCAGAAGAAGGACCTGATGCATGCATGCATTCACGCCTCTAC
GCCAAAGATGCACCAGAACATCCTCATCGTCCTGGAAGGGCTGCATTCGC
AGAAGAAGGTGAAAGGGGTGGACGCTGATCTCCTCCGGCTGTATGGTCCG
GTCATGTGGAGGTCTCTCCGCGTCGCCAACCCCTCCGTTCGCGCACAGGT
GAAAGGGGTGGACGCTGATCTCCTCCGGCTGTATGGTCCGGTCATGTGGA
GGTCTCTCCGCGTCGCCAACCCCTCCGTTCGCGCACAGGCCTGCCAGGTG
CTCGTGGACGCCTTCCCTCTGCAAGACCCCTCCGCAGGCCTGCCAGGTGC
TCGTGGACGCCTTCCCTCTGCAAGACCCCTCCGCAGGCGCGGCTTCCTAC
GACGCCACCTTGCAGCAGCAGTTCGTCGCTCTCACCGGTCTCCTTGAAGA
CGCACACCCCCAAGTCAGGGCTGTCGCCGGCAAGGCGCGGCTTCCTACGA
CGCCACCTTGCAGCAGCAGTTCGTCGCTCTCACCGGTCTCCTTGAAGACG
CACACCCCCAAGTCAGGGCTGTCGCCGGCAAG
back to top