mRNA_Ecto-sp9_F_contig11523.1302.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11523.1302.1
Unique NamemRNA_Ecto-sp9_F_contig11523.1302.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11523.1302.1 vs.
Match: Hypothetical (leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.600e-30
Identity = 73/85 (85.88%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:  100 MGKGRAGGDEGSSPAAATPRRRSPRGLNGSDAGVSTAVPADGGPRSRLAGREASTKEPKSRKQGPRDSPSSAGHSSVPLENPPSP 354
            MGKGR GGDEGSSPAAA P RRSPR LNGSD GVS+ +PADGGPRSR AGREASTKE KSRKQGPRDSPSSAGHS VPLE+PPSP
Sbjct:    1 MGKGRTGGDEGSSPAAAAPLRRSPRCLNGSDGGVSS-LPADGGPRSRRAGREASTKEAKSRKQGPRDSPSSAGHSPVPLESPPSP 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11523.1302.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical2.600e-3085.88leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11523contigEcto-sp9_F_contig11523:465..1986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D8LHT5
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K10272,ko:K15082
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110
EggNOG free text desc.F-box LRR-repeat protein
EggNOG OGsKOG1947@1,KOG1947@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-18_000380.1
EC1.4.3.21
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size466
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928407.9425945-CDS-Ecto-sp9_F_contig11523:464..7401622928407.9425945-CDS-Ecto-sp9_F_contig11523:464..740Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11523 465..740 +
1692277861.069275-CDS-Ecto-sp9_F_contig11523:464..7401692277861.069275-CDS-Ecto-sp9_F_contig11523:464..740Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11523 465..740 +
1622928407.9576004-CDS-Ecto-sp9_F_contig11523:1796..19851622928407.9576004-CDS-Ecto-sp9_F_contig11523:1796..1985Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11523 1797..1985 +
1692277861.080759-CDS-Ecto-sp9_F_contig11523:1796..19851692277861.080759-CDS-Ecto-sp9_F_contig11523:1796..1985Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11523 1797..1985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11523.1302.1prot_Ecto-sp9_F_contig11523.1302.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11523 465..1985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11523.1302.1

>prot_Ecto-sp9_F_contig11523.1302.1 ID=prot_Ecto-sp9_F_contig11523.1302.1|Name=mRNA_Ecto-sp9_F_contig11523.1302.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=155bp
GTHLSFPALQKPPPKCTKKAVTHLNMPRSSRTSMGKGRAGGDEGSSPAAA
TPRRRSPRGLNGSDAGVSTAVPADGGPRSRLAGREASTKEPKSRKQGPRD
SPSSAGHSSVPLENPPSPPPEGTAVASSSNGVQRRTAAADETVSGSTAAS
GTAAP
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mRNA from alignment at Ecto-sp9_F_contig11523:465..1986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11523.1302.1 ID=mRNA_Ecto-sp9_F_contig11523.1302.1|Name=mRNA_Ecto-sp9_F_contig11523.1302.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11523:465..1986+ (Ectocarpus species9 EcSCA_722f female)
GGCACCCACCTCTCTTTCCCTGCTCTGCAAAAACCTCCTCCCAAGTGTAC
GAAAAAAGCTGTGACCCACCTCAACATGCCTCGTTCGTCGCGGACCTCCA
TGGGCAAGGGACGCGCCGGCGGCGATGAAGGTTCGTCACCAGCTGCTGCT
ACCCCGCGCAGAAGGAGCCCGCGTGGTTTGAATGGGAGCGACGCCGGTGT
CTCTACCGCTGTCCCCGCTGACGGCGGCCCGCGAAGCAGGTTGGCCGGTC
GAGAGGCCAGCACCAAGGAACCGAAGGTAAGCAAGACACCATGATCATGA
TGGTGTGCGTCTTAGGCCTGTGTTGGCGATGCGAGCTTCAGCGCGAAGAG
GAGGTATCTGAAGCTGGCGCCGCTGCTGGGCTTTCAAACCGAGCCTGGTT
GTAAGTTTGTGTCCCGAGCGCTGGTTGTACAAAATGCCTAAAACCCCGCG
TTGTGCCTCTCGACTTTGAACCACCGCCGCGTGTGTGTTCGTGACTATCT
TCGGTTATATTCAGCTACATTGCCCCTTGATGTAGAACTGCCGTGTTGGC
AGTAAATGGGGAGCTCTATGGGAAGACCATTGCATGTCGTCCTCCCTCGC
GACACGACTTGTTCGGCGTCGGTCTCCCGAATACATGATCCCCCTCGATT
GTTTTCTCAACGAGGCCATATATATACATCTCCGTGCCATCATGAAAACA
ATTTCGAACGATATATATCGTGCTGCGATAAGCGTTTGGGCGCTGTGCAA
GATTTGGGCATCGAGTGTACGCGAATCTACAGCGGGAGGTATTGCGAGCT
TCGGCCGCAGAAATAAAATACTTCGAAGTATCTCCAAATTGCGCGCGAAA
AGGGCGCCTGCAGGCCGCCAATTTGCATTTTGGTTCTTGTACGCGGCTGG
ATGTACGTAGTTCTGCGGGATCGTCCATATGTGCTGTGCCTTTCGGCCCT
GTGTTTTTTGTGCACGAACGTAGACCCGCCTGAACTAGATACTGCCTTCG
AAGAGCCCGGCGTCACTACGCCCCCAGCTACATCGATGTGCTAGATACTT
CAGTTACACCTGATCTGCTTCGTGTCACTGCGGCTCAAATGTGGCCCTGA
AAAATATGGACGGAGAACCTCAAGTAATTAAGGCCATTGGGGCCCGAAGA
TCCTCCAATTTTTCTCTGAATCCATGGTTCTTTAGGCAATCAAACCACAC
GGGAGATGAGCAGATCCTCCCATGCCGTCCGATCCAATGCCCTTTCCGTC
GACGCATCAGTAAGCATACCTCCGCTCGCCCCTTCTCCGTCTCTGCCCGC
TCTCCCCCGCTTTCATGGCCCTACCAATGCAGTCAAGGAAGCAGGGCCCG
AGGGACTCCCCATCTTCCGCCGGCCACTCGTCCGTTCCACTGGAAAACCC
GCCCTCGCCTCCTCCAGAAGGCACGGCGGTCGCCAGCAGCAGCAACGGGG
TTCAGCGTCGCACAGCAGCAGCAGACGAAACCGTCAGCGGGAGCACCGCC
GCCTCCGGCACCGCTGCACCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11523:465..1986+

>mRNA_Ecto-sp9_F_contig11523.1302.1 ID=mRNA_Ecto-sp9_F_contig11523.1302.1|Name=mRNA_Ecto-sp9_F_contig11523.1302.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11523:465..1986+ (Ectocarpus species9 EcSCA_722f female)
GGCACCCACCTCTCTTTCCCTGCTCTGCAAAAACCTCCTCCCAAGTGTAC
GAAAAAAGCTGTGACCCACCTCAACATGCCTCGTTCGTCGCGGACCTCCA
TGGGCAAGGGACGCGCCGGCGGCGATGAAGGTTCGTCACCAGCTGCTGCT
ACCCCGCGCAGAAGGAGCCCGCGTGGTTTGAATGGGAGCGACGCCGGTGT
CTCTACCGCTGTCCCCGCTGACGGCGGCCCGCGAAGCAGGTTGGCCGGTC
GAGAGGCCAGCACCAAGGAACCGAAGGGCACCCACCTCTCTTTCCCTGCT
CTGCAAAAACCTCCTCCCAAGTGTACGAAAAAAGCTGTGACCCACCTCAA
CATGCCTCGTTCGTCGCGGACCTCCATGGGCAAGGGACGCGCCGGCGGCG
ATGAAGGTTCGTCACCAGCTGCTGCTACCCCGCGCAGAAGGAGCCCGCGT
GGTTTGAATGGGAGCGACGCCGGTGTCTCTACCGCTGTCCCCGCTGACGG
CGGCCCGCGAAGCAGGTTGGCCGGTCGAGAGGCCAGCACCAAGGAACCGA
AGTCAAGGAAGCAGGGCCCGAGGGACTCCCCATCTTCCGCCGGCCACTCG
TCCGTTCCACTGGAAAACCCGCCCTCGCCTCCTCCAGAAGGCACGGCGGT
CGCCAGCAGCAGCAACGGGGTTCAGCGTCGCACAGCAGCAGCAGACGAAA
CCGTCAGCGGGAGCACCGCCGCCTCCGGCACCGCTGCACCATCAAGGAAG
CAGGGCCCGAGGGACTCCCCATCTTCCGCCGGCCACTCGTCCGTTCCACT
GGAAAACCCGCCCTCGCCTCCTCCAGAAGGCACGGCGGTCGCCAGCAGCA
GCAACGGGGTTCAGCGTCGCACAGCAGCAGCAGACGAAACCGTCAGCGGG
AGCACCGCCGCCTCCGGCACCGCTGCACCA
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