mRNA_Ecto-sp9_F_contig1152.1297.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1152.1297.1
Unique NamemRNA_Ecto-sp9_F_contig1152.1297.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1152.1297.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE)

HSP 1 Score: 435 bits (1118), Expect = 4.140e-150
Identity = 226/236 (95.76%), Postives = 229/236 (97.03%), Query Frame = 1 
Query:  121 MTRGLVNARSSCRSCLLLVAASAATTQAFFVGGRCPLQARGARTTATPAERQHRTRARAGLSMIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQSERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 828
            MTRGLVNARSSCRSCLLLVAASAATTQAFFVGGRCPLQARGART A PAERQ RTRAR+GLSMIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPG+TPEAYPADSLDLD FWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQ+ERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPD G LG AESDGMY
Sbjct:    1 MTRGLVNARSSCRSCLLLVAASAATTQAFFVGGRCPLQARGARTAAAPAERQCRTRARSGLSMIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDMGGLGEAESDGMY 236
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BLAST of mRNA_Ecto-sp9_F_contig1152.1297.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 8.250e-115
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 1 
Query:  307 MIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQSERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 828
            MIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQ+ERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY
Sbjct:    1 MIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1152.1297.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.140e-15095.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.250e-11599.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1152contigEcto-sp9_F_contig1152:5890..9830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007610.1
Exons5
Model size1345
Cds size711
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928407.639357-UTR-Ecto-sp9_F_contig1152:5889..64031622928407.639357-UTR-Ecto-sp9_F_contig1152:5889..6403Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1152 5890..6403 -
1692277860.9153552-UTR-Ecto-sp9_F_contig1152:5889..64031692277860.9153552-UTR-Ecto-sp9_F_contig1152:5889..6403Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1152 5890..6403 -
1622928407.7091858-UTR-Ecto-sp9_F_contig1152:9710..98301622928407.7091858-UTR-Ecto-sp9_F_contig1152:9710..9830Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1152 9711..9830 -
1692277860.9640968-UTR-Ecto-sp9_F_contig1152:9710..98301692277860.9640968-UTR-Ecto-sp9_F_contig1152:9710..9830Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1152 9711..9830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928407.6507635-CDS-Ecto-sp9_F_contig1152:6403..65801622928407.6507635-CDS-Ecto-sp9_F_contig1152:6403..6580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 6404..6580 -
1692277860.9253385-CDS-Ecto-sp9_F_contig1152:6403..65801692277860.9253385-CDS-Ecto-sp9_F_contig1152:6403..6580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 6404..6580 -
1622928407.6624687-CDS-Ecto-sp9_F_contig1152:7639..77431622928407.6624687-CDS-Ecto-sp9_F_contig1152:7639..7743Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 7640..7743 -
1692277860.9331634-CDS-Ecto-sp9_F_contig1152:7639..77431692277860.9331634-CDS-Ecto-sp9_F_contig1152:7639..7743Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 7640..7743 -
1622928407.6744313-CDS-Ecto-sp9_F_contig1152:8296..84281622928407.6744313-CDS-Ecto-sp9_F_contig1152:8296..8428Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 8297..8428 -
1692277860.9411755-CDS-Ecto-sp9_F_contig1152:8296..84281692277860.9411755-CDS-Ecto-sp9_F_contig1152:8296..8428Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 8297..8428 -
1622928407.6854475-CDS-Ecto-sp9_F_contig1152:8828..89201622928407.6854475-CDS-Ecto-sp9_F_contig1152:8828..8920Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 8829..8920 -
1692277860.9490278-CDS-Ecto-sp9_F_contig1152:8828..89201692277860.9490278-CDS-Ecto-sp9_F_contig1152:8828..8920Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 8829..8920 -
1622928407.695745-CDS-Ecto-sp9_F_contig1152:9504..97101622928407.695745-CDS-Ecto-sp9_F_contig1152:9504..9710Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 9505..9710 -
1692277860.9565978-CDS-Ecto-sp9_F_contig1152:9504..97101692277860.9565978-CDS-Ecto-sp9_F_contig1152:9504..9710Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1152 9505..9710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1152.1297.1prot_Ecto-sp9_F_contig1152.1297.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1152 6404..9710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1152.1297.1

>prot_Ecto-sp9_F_contig1152.1297.1 ID=prot_Ecto-sp9_F_contig1152.1297.1|Name=mRNA_Ecto-sp9_F_contig1152.1297.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=237bp
MTRGLVNARSSCRSCLLLVAASAATTQAFFVGGRCPLQARGARTTATPAE
RQHRTRARAGLSMIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPE
AYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPS
ETELLERDIQSERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGV
IDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY*
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mRNA from alignment at Ecto-sp9_F_contig1152:5890..9830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1152.1297.1 ID=mRNA_Ecto-sp9_F_contig1152.1297.1|Name=mRNA_Ecto-sp9_F_contig1152.1297.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3941bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1152:5890..9830- (Ectocarpus species9 EcSCA_722f female)
CTCACACAACGCAAGCAACGACACGAGAGGACGCGCTGAGAACATAAGAG
ATAGGCTCTCCTGGCACGTAAAGAAATTGAGAGGAGTGATCTACTCGGTT
TGCTCTGGGCGAGAGGCAGCATGACCAGGGGCTTGGTGAACGCGAGGTCG
TCATGTCGGAGTTGCCTCCTGCTGGTGGCGGCTTCCGCAGCAACAACGCA
GGCCTTCTTCGTGGGGGGGCGGTGTCCTCTACAAGCGAGAGGAGCGAGAA
CAACAGCAACACCCGCCGAACGACAACATAGAACAAGAGCGCGAGCGGGG
CTTTCAATGATCATCCCACCCGCAGAGTGAGTTGAAGCGTCCCCCACGCA
CTGGCGTGGTTGGTTGAATGTTGTTGTAGCTGGTGTACGCAGACCTTGCC
GTGTTGATGGCCGCGAGACAAATTGATGATACCACTCTCAAACATGAACG
CACTCACACGCCGTTTGCGGTATGGTGTGATGCTCCTTGCCAAGGTGTAC
TTGAGTTGCGCACAACCACTTCATAAACTGCAAGCGTAGGAAGAACGTCC
AGAGACATTGTCTATCTGCTGCCAATCACGACGCGAGGTCTGTAGGTTTT
TAGTCCAGTGTAGCAGTGCTGCCGCCATGGGCGCAACACATACTCAGCAG
TGTAGTACTGCCTTGTAAGCTGGTGGGAAGCAAGAAGCAAACGGCAGCCT
TTGTATGCATGCACGAGTAAGTCTGAAACGCACGATTGAATGTGCATGCA
CTGCTGTAAACACTGATATCGATATGGACTACACAGGTCCCAAGTTTAAG
GTTGTGCACTCAGTAACTAGGGAACACACCAGCTGTCCGTGAACACGTTG
TTTGCTCTCCTCCTCACGATTTCGCTTCACCTTAACACCAACAACCCACG
CCGATGTCAGGTTGGGGTACGTGACTGAGGCCTACGACGACTTCCCAGAC
TACGTTCCCAACATGGGTGCTTGGGGAGAGTCGAAGCCGGGAAACACTCC
GGGTGAGAGGCAGGGACAGATAGAACGGGGGGGCAGCCATGAACAGGAAC
GGACGGGGGGGGGGGGGGGGGAGAGAGACAGAGAGGCCGAGAGAGTGGGG
GGCTAAGAGAGAGGGAGAGAGGGAAGTGTCGAGGACGTTGTTGTGGTCTC
AGGGCGGCGTCCAGTAAAGAGGCGGTTTGATGTTTGTTTAGCGAGCGCAG
GAGTCGCTCGCATACAATAGCTCGCCGACATTCCTTGAATCGGAGCTGGA
GACTATGCAGGACACACCAAAGAGTGTTTCATTGTCGTAGGTGTCAAATG
CACGACTGCTTTGAACACCAATAGCTGTCCTGACATACCCACCGTACACC
TTGATAAAACAAAACGTAGTGTTGACTTTGAGATGTTTCCCGATCGTTTC
AGAGGCTTACCCGGCGGACTCGCTGGATCTGGACGCCTTTTGGAACGGAG
GGGCGGAGGCGGTGGACTTTCACGACATCCCGGTGGTCGACCGGCCTGTC
TTCGTGGAGATGAAGCAGTTCATCGACAATGAAGGTCATACATACATTAT
AGTCGTTCCGATTTTCGCATGATTGACCCAATCGTTTGCCAAAGGACTAG
CCTGAGTTGTTCGTGTTTTTTTAGGCCGATTCGATTCCATTTTGGTCTTT
AGTTTTCCTGTTTTTCCGGCAGGATTATGAAAGTTAGAACGTTCTGGAAA
TGGATGGATGTAGTGTTTCGAATTGAGTCAGACATCGTTGCACCAGGCTG
CATGGCACCTCGAACATAGGATTTGTCGGCACTTCTCTCGAAGACATGCA
ACTGAGGGTGATTATTAAGCTTGGCTGACCGCCAGGAGCACGAGGACGAG
GCGATACGTACGTAGTGGGTGTTGAACGGCGACCTATCAAGCAACGATGA
TCGATCCGGCAGCAGCACCGTCGTGCTCGGAGGGTCCGTTTAGCTTGCAC
TTCATTTGCTGGAGCATGCGTCACAGACATCGTCTGTTGCGGAGCCCCCG
TGAGCGGAGGTCACTGCTTGCTGTGTAGACTCGAGTCCGACCCATGCTGC
GCTTCGATGTTCGCTGCCATCTTTCGCTGCATGTTAGGGCTAACGATGCT
CCCATCGGAGACCGAGCTATTGGAGAGGGATATCCAGAGCGAGCGGAGAG
CACGCGCTAAGGCCAGGAAGGAGCGCTTCGCGGACGAACCGGTGAGTACG
ATTGGGGGAGTTGTATGCACTACCTGCTGCTGGCGTTTGGGGGCGCAAGA
GCGCCGTAAGACAATCGACTGTTTTTTTTCCCCCACATCTGTCTGTCTAC
AGATTGGGTAGGATCGTGATTTCGATGTTGTTCACGGATTGGATCATGTA
GTGTATCTACGCATTTCGAGAGAAAGCGAAACAACTCGTGTCCCAAAACC
GCGTGTAGTCGGATCGCTCCCCCGTACGCGATGGAACATGTTTCCCATGT
GCACGGGGCGATCTCGCGTAGCCGTGCAACATCACAACACCATCGTTGGA
GGCGTGGCATAAGCAGTGGCAGGATGTTTTTGACAGCCTCCGTCATTTTT
TGAGCATCAAAAGTGATGATGTCATGGTCAGGGTTTACGCACTCCACCAC
CGATGTTTCGCGAAACGCTCGCTTTCAACGCTGAGATGTGTGCTTCGCAC
TTCTATCAAGTTTGCGGAGCGCAAAGAGCTCTCTGCGTGAACCCTTCGGT
TTGGTGGTCGGTGGCGTTCTGCACGGTACGCGATGTTGACGGTTATTTGG
AAGATTTATTGAACAGGAGCACGTGCCTCTTGGGTGCCATTGCTTGCCAG
TCGCTGCTTCTTGCTCTCGGAGCTGTTGAGTATGGTCTGTGAACGATGAC
GTTCAGCACCCGATTTGAGTTCCTCAATCCTACTTCTGACACAACAGTAG
TAGTGCAACGTGGACACAATGTTCGACACCCCGGCATTAGTACGCACTCA
TGCGAACAGGTCTGCTAAATGTTGTAGCTCCCGTTCAGACAACCCGCCCT
CGGTCGTTTCTTTTCCCTGGCCCATGTTTCATTCTCCCGGCCCGTGTTCC
CATGATTCTTGCATTATTTGTCACCGATTTGCTTCTACTACGTCCAAAAT
AATCACGGAATCCACCACCCGTCGTGCTTTCGTACACGCCACCAGTGAGA
TACATTGTTTCGATCACGAAGTCGGCCATCCTGAGACACCAGGTTTTTCT
TTAAAGTTAACCACTCCCTACCCACAATATGAAACCGCATACCGTGACAG
GATGAGGATCTGGTGGACGACACCCTGGACGACTTGCCGCTCGACGACGA
GATCGAGGTCGGCGTGATCGACGTCCCGCCGCCGCCGGTAGATTTCGACG
ACAGTGACGGTTACGACGACGGGTACGACCCGGACACGGGGGACCTCGGA
GGGGCAGAGAGCGATGGCATGTACTAAATATCCAAAGACGCTTTGGTGTG
TGTATCCCCTCCCCCAGCACCCTTGCGGGTAACTGAGAGCCTTGATTTAG
CAACCAAGTGTGTTGTGTCTGCAGGAAAACGAGCCTTCGTGTAGCAACCA
AACGTTTCATTGCTGCAGGAAAGAACCTGCTGAATGATGTTGCCGCTCCC
GGTGCTAGCGAGTCTATCTGGTGAAGACGTTCTGCCGAGGGCAGCAGGTT
TCGGCGATACCGGAATTGTTTGTGGTTGTTGGTAGACCAGCGGTGGAAAG
TCTCGGAAGACAAGTATGGTTCCTCATATTTGCGACCACTGTCGTTAGAG
CGGAACAGGCAGCACCAGCAATCAGCGTGAGGCAGTATCTGTTCTCGTGG
CCACAAGGGTTGGCTGAACTGATGTAAGAGTTTTGTTTCTTTCGGTGATT
GCCTCAGTTTCGTTTTGGTGCCACGGGACCACACGGTCGGGGGATGTTGA
AGCCCACCCTGTCAAAGAACACGAAAACAACCTCAAAGACA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1152:5890..9830-

>mRNA_Ecto-sp9_F_contig1152.1297.1 ID=mRNA_Ecto-sp9_F_contig1152.1297.1|Name=mRNA_Ecto-sp9_F_contig1152.1297.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1422bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1152:5890..9830- (Ectocarpus species9 EcSCA_722f female)
ATGACCAGGGGCTTGGTGAACGCGAGGTCGTCATGTCGGAGTTGCCTCCT
GCTGGTGGCGGCTTCCGCAGCAACAACGCAGGCCTTCTTCGTGGGGGGGC
GGTGTCCTCTACAAGCGAGAGGAGCGAGAACAACAGCAACACCCGCCGAA
CGACAACATAGAACAAGAGCGCGAGCGGGGCTTTCAATGATCATCCCACC
CGCAGAATGACCAGGGGCTTGGTGAACGCGAGGTCGTCATGTCGGAGTTG
CCTCCTGCTGGTGGCGGCTTCCGCAGCAACAACGCAGGCCTTCTTCGTGG
GGGGGCGGTGTCCTCTACAAGCGAGAGGAGCGAGAACAACAGCAACACCC
GCCGAACGACAACATAGAACAAGAGCGCGAGCGGGGCTTTCAATGATCAT
CCCACCCGCAGAGTTGGGGTACGTGACTGAGGCCTACGACGACTTCCCAG
ACTACGTTCCCAACATGGGTGCTTGGGGAGAGTCGAAGCCGGGAAACACT
CCGGGTTGGGGTACGTGACTGAGGCCTACGACGACTTCCCAGACTACGTT
CCCAACATGGGTGCTTGGGGAGAGTCGAAGCCGGGAAACACTCCGGAGGC
TTACCCGGCGGACTCGCTGGATCTGGACGCCTTTTGGAACGGAGGGGCGG
AGGCGGTGGACTTTCACGACATCCCGGTGGTCGACCGGCCTGTCTTCGTG
GAGATGAAGCAGTTCATCGACAATGAAGAGGCTTACCCGGCGGACTCGCT
GGATCTGGACGCCTTTTGGAACGGAGGGGCGGAGGCGGTGGACTTTCACG
ACATCCCGGTGGTCGACCGGCCTGTCTTCGTGGAGATGAAGCAGTTCATC
GACAATGAAGGGCTAACGATGCTCCCATCGGAGACCGAGCTATTGGAGAG
GGATATCCAGAGCGAGCGGAGAGCACGCGCTAAGGCCAGGAAGGAGCGCT
TCGCGGACGAACCGGGCTAACGATGCTCCCATCGGAGACCGAGCTATTGG
AGAGGGATATCCAGAGCGAGCGGAGAGCACGCGCTAAGGCCAGGAAGGAG
CGCTTCGCGGACGAACCGGATGAGGATCTGGTGGACGACACCCTGGACGA
CTTGCCGCTCGACGACGAGATCGAGGTCGGCGTGATCGACGTCCCGCCGC
CGCCGGTAGATTTCGACGACAGTGACGGTTACGACGACGGGTACGACCCG
GACACGGGGGACCTCGGAGGGGCAGAGAGCGATGGCATGTACTAAGATGA
GGATCTGGTGGACGACACCCTGGACGACTTGCCGCTCGACGACGAGATCG
AGGTCGGCGTGATCGACGTCCCGCCGCCGCCGGTAGATTTCGACGACAGT
GACGGTTACGACGACGGGTACGACCCGGACACGGGGGACCTCGGAGGGGC
AGAGAGCGATGGCATGTACTAA
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