mRNA_Ecto-sp9_F_contig11518.1295.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11518.1295.1
Unique NamemRNA_Ecto-sp9_F_contig11518.1295.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11518.1295.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI)

HSP 1 Score: 462 bits (1189), Expect = 4.550e-154
Identity = 276/331 (83.38%), Postives = 287/331 (86.71%), Query Frame = 1 
Query:    1 KVLTVLLDVGCDVESADSGGWTPLHCACAAARASCVNTLVMRGADPSAITPEGKRAASLIGTDLAEGDEPNSETNETIWKMLRVPRAESEARRRRRTAKNAGNQRPPPPYNDXXXXAYGPDSVGGMVVFDSAGSGSATXXXXXXXXXXGSRQLHRSPTHPQEAPTGSGGKDSRRGAARTNGHRDANGGGIPREKSATRRGDQQQXXXXXXXXRPRERVREFAEGQYAGKEGDSEADNTAGVVVDPAGVGGEGGLRGGGG--SGFKPTPDQYQNQPRPSRDKRVSTDVLVGGVAAGRPAGRSPAAGGXXXXXXXXXXXXXPPPTGEAGARGD 987
            +VLTVLLDVGCDVESADSGGWTPLHCACAAARASCVNTL+MRGADPSAITPEGKRAASLIGTDLAEGDEPNSETNETIWKMLRVPRAESEARRRRRTAKNAGNQRPPPPYNDXXXXAYGPDSVGG+VVFDSAGSGSATXXXXXXXXXXGSRQLHRSPTHPQEAP GSGGK SRRGAA TNGHRDANGGGIPRE+SATRRGDQQ  XXXXXXX       EFAEGQYAGKEGD E D T   VVDPA VG            SG+KPTPDQYQ+QPRPSRDKRVSTDV+VGGVAAGRPAGRSPAAGG             PPPTG+AG++G+
Sbjct:  306 EVLTVLLDVGCDVESADSGGWTPLHCACAAARASCVNTLIMRGADPSAITPEGKRAASLIGTDLAEGDEPNSETNETIWKMLRVPRAESEARRRRRTAKNAGNQRPPPPYNDXXXXAYGPDSVGGIVVFDSAGSGSATXXXXXXXXXXGSRQLHRSPTHPQEAPAGSGGKGSRRGAAPTNGHRDANGGGIPRERSATRRGDQQHQXXXXXXXXXX--XXEFAEGQYAGKEGDLEGDTTG--VVDPAAVGXXXXXXXXXXXXSGYKPTPDQYQSQPRPSRDKRVSTDVVVGGVAAGRPAGRSPAAGGVGVAGETRGAERSPPPTGKAGSQGE 632
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11518.1295.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ankyrin4.550e-15483.38repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11518contigEcto-sp9_F_contig11518:2..3461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score469.9
Seed ortholog evalue9.6e-130
Seed eggNOG ortholog2880.D7FH38
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size993
Cds size993
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11518.1295.1prot_Ecto-sp9_F_contig11518.1295.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11518 2..3461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928407.35307-CDS-Ecto-sp9_F_contig11518:1..5201622928407.35307-CDS-Ecto-sp9_F_contig11518:1..520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11518 2..520 -
1692277860.7794044-CDS-Ecto-sp9_F_contig11518:1..5201692277860.7794044-CDS-Ecto-sp9_F_contig11518:1..520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11518 2..520 -
1622928407.3693519-CDS-Ecto-sp9_F_contig11518:1282..14181622928407.3693519-CDS-Ecto-sp9_F_contig11518:1282..1418Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11518 1283..1418 -
1692277860.7881002-CDS-Ecto-sp9_F_contig11518:1282..14181692277860.7881002-CDS-Ecto-sp9_F_contig11518:1282..1418Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11518 1283..1418 -
1622928407.3851774-CDS-Ecto-sp9_F_contig11518:2338..24901622928407.3851774-CDS-Ecto-sp9_F_contig11518:2338..2490Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11518 2339..2490 -
1692277860.7981389-CDS-Ecto-sp9_F_contig11518:2338..24901692277860.7981389-CDS-Ecto-sp9_F_contig11518:2338..2490Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11518 2339..2490 -
1622928407.4000547-CDS-Ecto-sp9_F_contig11518:3275..34611622928407.4000547-CDS-Ecto-sp9_F_contig11518:3275..3461Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11518 3276..3461 -
1692277860.805824-CDS-Ecto-sp9_F_contig11518:3275..34611692277860.805824-CDS-Ecto-sp9_F_contig11518:3275..3461Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11518 3276..3461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11518.1295.1

>prot_Ecto-sp9_F_contig11518.1295.1 ID=prot_Ecto-sp9_F_contig11518.1295.1|Name=mRNA_Ecto-sp9_F_contig11518.1295.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=331bp
KVLTVLLDVGCDVESADSGGWTPLHCACAAARASCVNTLVMRGADPSAIT
PEGKRAASLIGTDLAEGDEPNSETNETIWKMLRVPRAESEARRRRRTAKN
AGNQRPPPPYNDRPPPAYGPDSVGGMVVFDSAGSGSATGSASGSFSGSGS
RQLHRSPTHPQEAPTGSGGKDSRRGAARTNGHRDANGGGIPREKSATRRG
DQQQQQQQQSQRRPRERVREFAEGQYAGKEGDSEADNTAGVVVDPAGVGG
EGGLRGGGGSGFKPTPDQYQNQPRPSRDKRVSTDVLVGGVAAGRPAGRSP
AAGGVGGGGGAGGAEGGPPPTGEAGARGDGG
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mRNA from alignment at Ecto-sp9_F_contig11518:2..3461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11518.1295.1 ID=mRNA_Ecto-sp9_F_contig11518.1295.1|Name=mRNA_Ecto-sp9_F_contig11518.1295.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3460bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11518:2..3461- (Ectocarpus species9 EcSCA_722f female)
AAGGTGCTGACGGTGCTCTTGGATGTCGGGTGCGACGTGGAAAGCGCTGA
CTCTGGGGGGTGGACCCCGCTTCACTGCGCCTGCGCTGCCGCCCGCGCTA
GCTGCGTTAACACGCTCGTCATGAGGGGAGCGGATCCGTCTGCCATAACG
CCGGAAGGGAAGCGGGCGGCGTCTCTCATTGGGACGGTAGGGTTCATGGC
CTGTTGCTGCTGCTGTTGTTGTTGTTGTCGTGTGTCTTTATTCGCATCGA
CCTCATCGGGACGGTGAGGTTCATGGCCTGTTGCTGTTGTTGTTCATGTG
TGTCTTCATTATTCGCGTTGGCCTCTAACCGGCTGACAAAAGAAAAAGCT
TCTACAGGCGATGATCTTGTACGTCTGTAGTGGTGGTGATGGTGGTGGTG
GTGTTTGATGTGTGTGGTGTGGGCGTCGTGGTGGTGTTTGATTTGTTGAC
GGTGTGCTTGCTGTTGCTGTTGCTGCTGTTTTGAGGTGTTCCCTGTTTCG
TGTTGTTGCCTCCGTGTCTACCTTCTTGCATCCGGACGCCTCACGCAGCG
ACATCGGTGTACAGTTGAAGGCCCTCAGTAGTGCCGGTACGGACCAGAGC
AGTTTGCCGGCACTGTTCAGAACAGGGATAGGATACATATTAAGTGGTAT
TTTTTTTTCGTCCTGACATTTGATCGGCACTATGCCGGGCATTGGCACTG
TTCAAACCGGCGCTACTGAGGGCCTTTTACTGCTGTGCAGCAGTTCGACT
TTGTAAAACCGAAGACCCGGAGAAGTCACCTCTCTCTCTCTTAGAGAGTA
TACACAACTTCACAGAAAGACTACAATACTCGTTCGGGATATATCACCAC
AACAATCGAGAGTGATGTAGGTGCTGTCTTTTCCGTGATTGGAGGGAACC
CGGCTGGAAACTGGGCCTTTTTTGAGTTCGTTTGAGCCTATGCACTTCTC
TTCCTTTCGTGGCGGCGGCAGGATCTGGCGGAAGGGGACGAGCCGAACAG
CGAGACCAACGAGACGATCTGGAAGATGCTCAGGGTGCCGAGAGCAGAGT
CGGAGGCTCGCCGCAGGAGGCGTACGGCGAAGAACGCCGGGAACCAGCGC
CCCCCTCCCCCCTACAACGACCGGTGCGTATGCCATATTGTTCTTGTTCT
GTTGTTGGTGTGGTTGTTGTTGTTGTTGTTGTCAAACATTTGACGCGGTC
GATTCCCGTGGTCTCAGGCTAACTTACGCATGCCAGCAGCTATTTTACGG
TCTGTTCATGTACGGGGGTTTTAATCCCTCTGATTGGTTGGTTGGTCGAG
CGTTGGTTCTTGCGGTCGATTGCTCTCCCTCCGCCCTACAACGACCGGTG
CGTATATCGCCGTAATAACGGTCTGTTTTTATTGTGACATGTTGTTGTCT
GGTGTGGTGGTATTGAGGGGACACGCGGATAGGAAATGTTGCGTCAGTAC
TTAATTCTTGCCAAGAAGACGCCCTCGACAAGCCTTGTCAGCCCTTTGCG
GGCCGGGCCGGGCCTGCCTGCCTGGACCCACCACAAACACGGTTGTCTCT
CATTATATTCAAGTTCATATTCCTGTACTCTTGTTATTGAAAGTAATATT
TCGAATGGGAGGTCTCTCATTGATTGTATGTATTATTTTCTACAACAGCT
TGTTTTTTCTCCTTTATCTTGCGTATCCGATAGCGCACAAAAAGTATTTC
TACTTGTACCTCTTTTTTAAGCGTGAACTTATTTCCTGTTTTTTCATCTT
GAGATAATTATTATTTCCATGCCGTCATCCTCCACAAGTTACGTTGAAGT
TGAAATAGAAAAAGACGACCTCCCTTTTCATTTCATGTTGAGAGTTTTTC
TTTTAACATGCCGTGACCCTCCACAAGTTAATTTGAAAATGGTAGAACAT
AATCGACGTACCTTTTCGTTTCATCTTCAGAGATTTTCTTTACAATGCCG
TGGTCCTCCACAAGTTGAGTTGAACTAGAACGTGACCGACGTACCTTTTT
CATTTTGAATCCGACGAAAATCACCACATTTTACCATCCGCAGCCCCCCG
CCAGCGTACGGACCCGACTCCGTCGGAGGGATGGTTGTGTTCGACAGCGC
CGGGAGCGGGAGTGCTACGGGGAGCGCTAGCGGGAGCTTCAGCGGGTCCG
GGTCGCGACAGCTGCACCGCAGCCCTACGGTATGGGCCAGGGTTATTTGG
ATATGGCATCTCGCCATGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCACCCCACCACGGACCCTCTGGCAAGAGAAAAAACAGAGGAACAAGG
CGGATGAAGAGAAANNNNNNNNNNGCGGGGGCGGGCGGGGGGGGCCGGGG
CGCGCCCCCGCCCCCCCCGCCCGGGGGGGTGGGGGGGTTTTTTTTGGTTC
TCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAGAAAACATGAAACTT
GAGAGCTGTTGTAGTCCCAGAAAACATGAAGATTGAGAGCTGTTGTAGTA
AAACATGACATCCCGTTCGACTACTGCTGTGGTTATATCGTTATATCCCA
AAGGGGTACTAATCTTTCTGTGGTTTTTGTGCATATTTCCAAAAACCGTT
CATAGTTTTTAGTTGGTGGAGGTGGTAGTGGTGCTGCTATTGCTGTTGTT
GCTGTTGTGTCGGTGCCGTTGTTCGGAAAGAGGGTTCTGTGTTTGAAGTG
TCCAGTTTACGTTTGCTTTTCGTGTGTCTTGTGTATGTTTTTTTTTTTGT
ATTTTCTGAATATTGCACCACGAGTTCATCTCCATCTATAGAACAGATTT
CAGATAGATTAGCAACGAGTCCTAGCGTCAGCGGGAGCTACCTGATATTC
CACGATTTCGCGAGCAGCACACGTTTTTCTTTTCAGACTTGAGTTAATAT
TCATTCAGACGACTCCCCCCACCCCGCCGTAACTAACTCAGCATCCGCAG
GAGGCGCCTACCGGCAGCGGAGGGAAAGACTCGCGCCGCGGCGCCGCTCG
TACCAACGGCCATCGCGACGCTAATGGTGGCGGCATTCCCCGCGAGAAAT
CAGCCACACGCCGTGGAGACCAGCAGCAGCAGCAGCAGCAGCAGTCACAA
CGTAGGCCTCGCGAGCGAGTGAGGGAGTTCGCGGAGGGACAATACGCGGG
CAAGGAAGGCGACTCGGAAGCTGACAACACTGCCGGCGTTGTTGTTGACC
CCGCTGGTGTTGGCGGGGAGGGGGGGCTCCGTGGGGGGGGTGGCAGTGGT
TTCAAGCCGACCCCGGACCAGTACCAGAACCAGCCCCGACCCTCCCGCGA
CAAGAGGGTCTCGACGGATGTGCTGGTGGGCGGGGTCGCGGCCGGACGGC
CTGCCGGCAGGTCTCCAGCCGCCGGGGGGGTGGGGGGGGGGGGGGGGGCC
GGGGGGGCGGAGGGGGGCCCGCCTCCTACGGGGGAGGCGGGGGCACGGGG
GGACGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11518:2..3461-

>mRNA_Ecto-sp9_F_contig11518.1295.1 ID=mRNA_Ecto-sp9_F_contig11518.1295.1|Name=mRNA_Ecto-sp9_F_contig11518.1295.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1986bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11518:2..3461- (Ectocarpus species9 EcSCA_722f female)
AAGGTGCTGACGGTGCTCTTGGATGTCGGGTGCGACGTGGAAAGCGCTGA
CTCTGGGGGGTGGACCCCGCTTCACTGCGCCTGCGCTGCCGCCCGCGCTA
GCTGCGTTAACACGCTCGTCATGAGGGGAGCGGATCCGTCTGCCATAACG
CCGGAAGGGAAGCGGGCGGCGTCTCTCATTGGGACGAAGGTGCTGACGGT
GCTCTTGGATGTCGGGTGCGACGTGGAAAGCGCTGACTCTGGGGGGTGGA
CCCCGCTTCACTGCGCCTGCGCTGCCGCCCGCGCTAGCTGCGTTAACACG
CTCGTCATGAGGGGAGCGGATCCGTCTGCCATAACGCCGGAAGGGAAGCG
GGCGGCGTCTCTCATTGGGACGGATCTGGCGGAAGGGGACGAGCCGAACA
GCGAGACCAACGAGACGATCTGGAAGATGCTCAGGGTGCCGAGAGCAGAG
TCGGAGGCTCGCCGCAGGAGGCGTACGGCGAAGAACGCCGGGAACCAGCG
CCCCCCTCCCCCCTACAACGACCGGATCTGGCGGAAGGGGACGAGCCGAA
CAGCGAGACCAACGAGACGATCTGGAAGATGCTCAGGGTGCCGAGAGCAG
AGTCGGAGGCTCGCCGCAGGAGGCGTACGGCGAAGAACGCCGGGAACCAG
CGCCCCCCTCCCCCCTACAACGACCGCCCCCCGCCAGCGTACGGACCCGA
CTCCGTCGGAGGGATGGTTGTGTTCGACAGCGCCGGGAGCGGGAGTGCTA
CGGGGAGCGCTAGCGGGAGCTTCAGCGGGTCCGGGTCGCGACAGCTGCAC
CGCAGCCCTACGCCCCCCGCCAGCGTACGGACCCGACTCCGTCGGAGGGA
TGGTTGTGTTCGACAGCGCCGGGAGCGGGAGTGCTACGGGGAGCGCTAGC
GGGAGCTTCAGCGGGTCCGGGTCGCGACAGCTGCACCGCAGCCCTACGCA
TCCGCAGGAGGCGCCTACCGGCAGCGGAGGGAAAGACTCGCGCCGCGGCG
CCGCTCGTACCAACGGCCATCGCGACGCTAATGGTGGCGGCATTCCCCGC
GAGAAATCAGCCACACGCCGTGGAGACCAGCAGCAGCAGCAGCAGCAGCA
GTCACAACGTAGGCCTCGCGAGCGAGTGAGGGAGTTCGCGGAGGGACAAT
ACGCGGGCAAGGAAGGCGACTCGGAAGCTGACAACACTGCCGGCGTTGTT
GTTGACCCCGCTGGTGTTGGCGGGGAGGGGGGGCTCCGTGGGGGGGGTGG
CAGTGGTTTCAAGCCGACCCCGGACCAGTACCAGAACCAGCCCCGACCCT
CCCGCGACAAGAGGGTCTCGACGGATGTGCTGGTGGGCGGGGTCGCGGCC
GGACGGCCTGCCGGCAGGTCTCCAGCCGCCGGGGGGGTGGGGGGGGGGGG
GGGGGCCGGGGGGGCGGAGGGGGGCCCGCCTCCTACGGGGGAGGCGGGGG
CACGGGGGGACGGGGGGCATCCGCAGGAGGCGCCTACCGGCAGCGGAGGG
AAAGACTCGCGCCGCGGCGCCGCTCGTACCAACGGCCATCGCGACGCTAA
TGGTGGCGGCATTCCCCGCGAGAAATCAGCCACACGCCGTGGAGACCAGC
AGCAGCAGCAGCAGCAGCAGTCACAACGTAGGCCTCGCGAGCGAGTGAGG
GAGTTCGCGGAGGGACAATACGCGGGCAAGGAAGGCGACTCGGAAGCTGA
CAACACTGCCGGCGTTGTTGTTGACCCCGCTGGTGTTGGCGGGGAGGGGG
GGCTCCGTGGGGGGGGTGGCAGTGGTTTCAAGCCGACCCCGGACCAGTAC
CAGAACCAGCCCCGACCCTCCCGCGACAAGAGGGTCTCGACGGATGTGCT
GGTGGGCGGGGTCGCGGCCGGACGGCCTGCCGGCAGGTCTCCAGCCGCCG
GGGGGGTGGGGGGGGGGGGGGGGGCCGGGGGGGCGGAGGGGGGCCCGCCT
CCTACGGGGGAGGCGGGGGCACGGGGGGACGGGGGG
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