mRNA_Ecto-sp9_F_contig11516.1294.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11516.1294.1
Unique NamemRNA_Ecto-sp9_F_contig11516.1294.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11516.1294.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP6_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.970e-33
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:    2 QSSSGVGGVGDPNADARGRSHATSDWTGGAGGXXXXXXXXXXDEHTAVGEKEHAVSVADQSHGGEARQQPAGSDAGGDEDEGXDAIGGVC 271
            QSSSGVGGVGDPNA ARGRSHAT+DWTGG   XXXXXXXXXXDE TAVGEKEHAVSVA+QSHGGEA+QQPAGSDAGGDEDEG DAIGGVC
Sbjct:  202 QSSSGVGGVGDPNAGARGRSHATTDWTGGXXXXXXXXXXXXXDEPTAVGEKEHAVSVAEQSHGGEAQQQPAGSDAGGDEDEGEDAIGGVC 291
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BLAST of mRNA_Ecto-sp9_F_contig11516.1294.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.830e-24
Identity = 73/93 (78.49%), Postives = 76/93 (81.72%), Query Frame = 2 
Query:    2 QSSSGVGGVGDPNADARGRSHATSDWTGGAGGXXXXXXXXXX---DEHTAVGEKEHAVSVADQSHGGEARQQPAGSDAGGDEDEGXDAIGGVC 271
            QSSSGVG VGD NADARGRSHATSDWTG    XXXXXXXXXX   DE TAVGEKEH VSVA+Q HGGE +QQ A SDAGGDED+  DAIGGVC
Sbjct:   53 QSSSGVGRVGDRNADARGRSHATSDWTGSXXXXXXXXXXXXXXXXDEPTAVGEKEHVVSVAEQLHGGEVQQQKAWSDAGGDEDDSEDAIGGVC 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11516.1294.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Zn(2)-C65.970e-3390.00fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Zn(2)-C64.830e-2478.49fungal-type domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11516contigEcto-sp9_F_contig11516:2923..3225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928407.3093789-CDS-Ecto-sp9_F_contig11516:2922..32251622928407.3093789-CDS-Ecto-sp9_F_contig11516:2922..3225Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11516 2923..3225 +
1692277860.7715733-CDS-Ecto-sp9_F_contig11516:2922..32251692277860.7715733-CDS-Ecto-sp9_F_contig11516:2922..3225Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11516 2923..3225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11516.1294.1prot_Ecto-sp9_F_contig11516.1294.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11516 2923..3225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11516.1294.1

>prot_Ecto-sp9_F_contig11516.1294.1 ID=prot_Ecto-sp9_F_contig11516.1294.1|Name=mRNA_Ecto-sp9_F_contig11516.1294.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=101bp
PIFIRRRRCRRSECRRSRPQPRHERLDGRRRRQQQQRRWRQRRRAHCGGR
EGARGVGRGSIARRRGSAAAGGERRWRRRGRGRGCDRRCLWWRRGGRRGR
S
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mRNA from alignment at Ecto-sp9_F_contig11516:2923..3225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11516.1294.1 ID=mRNA_Ecto-sp9_F_contig11516.1294.1|Name=mRNA_Ecto-sp9_F_contig11516.1294.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11516:2923..3225+ (Ectocarpus species9 EcSCA_722f female)
CCAATCTTCATCCGGCGTCGGAGGTGTCGGAGATCCGAATGCCGACGCTC
GCGGCCGCAGCCACGCCACGAGCGACTGGACGGGCGGCGCCGGCGGCAGC
AGCAGCAGCGGCGATGGCGACAGCGACGACGAGCACACTGCGGTGGGAGA
GAAGGAGCACGCGGTGTCGGTCGCGGATCAATCGCACGGCGGCGAGGCTC
GGCAGCAGCCGGCGGGGAGCGACGCTGGCGGAGACGAGGACGAGGGCGAG
GATGCGATAGGAGGTGTTTGTGGTGGCGTCGGGGTGGGCGTCGGGGACGG
AGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11516:2923..3225+

>mRNA_Ecto-sp9_F_contig11516.1294.1 ID=mRNA_Ecto-sp9_F_contig11516.1294.1|Name=mRNA_Ecto-sp9_F_contig11516.1294.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11516:2923..3225+ (Ectocarpus species9 EcSCA_722f female)
CCAATCTTCATCCGGCGTCGGAGGTGTCGGAGATCCGAATGCCGACGCTC
GCGGCCGCAGCCACGCCACGAGCGACTGGACGGGCGGCGCCGGCGGCAGC
AGCAGCAGCGGCGATGGCGACAGCGACGACGAGCACACTGCGGTGGGAGA
GAAGGAGCACGCGGTGTCGGTCGCGGATCAATCGCACGGCGGCGAGGCTC
GGCAGCAGCCGGCGGGGAGCGACGCTGGCGGAGACGAGGACGAGGGCGAG
GATGCGATAGGAGGTGTTTGTGGTGGCGTCGGGGTGGGCGTCGGGGACGG
AGCCCAATCTTCATCCGGCGTCGGAGGTGTCGGAGATCCGAATGCCGACG
CTCGCGGCCGCAGCCACGCCACGAGCGACTGGACGGGCGGCGCCGGCGGC
AGCAGCAGCAGCGGCGATGGCGACAGCGACGACGAGCACACTGCGGTGGG
AGAGAAGGAGCACGCGGTGTCGGTCGCGGATCAATCGCACGGCGGCGAGG
CTCGGCAGCAGCCGGCGGGGAGCGACGCTGGCGGAGACGAGGACGAGGGC
GAGGATGCGATAGGAGGTGTTTGTGGTGGCGTCGGGGTGGGCGTCGGGGA
CGGAGC
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