mRNA_Ecto-sp9_F_contig1151.1287.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1151.1287.1
Unique NamemRNA_Ecto-sp9_F_contig1151.1287.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1151.1287.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.920e-15
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 
Query: 1018 LRELRARTMRYLFGHDHDEFEENDSDRGAGETTEAFARRCLAESKRIT 1161
            LRELRARTM YLFGHDHDE EENDS RGAGET EAFARRCLAESKRIT
Sbjct:  784 LRELRARTMWYLFGHDHDEHEENDSGRGAGETIEAFARRCLAESKRIT 831
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1151.1287.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Reverse4.920e-1591.67transcriptase domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1151contigEcto-sp9_F_contig1151:20660..23431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002040.1
Exons5
Model size1164
Cds size1164
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1151.1287.1prot_Ecto-sp9_F_contig1151.1287.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1151 20660..23431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928406.866088-CDS-Ecto-sp9_F_contig1151:20659..211031622928406.866088-CDS-Ecto-sp9_F_contig1151:20659..21103Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 20660..21103 +
1692277860.551147-CDS-Ecto-sp9_F_contig1151:20659..211031692277860.551147-CDS-Ecto-sp9_F_contig1151:20659..21103Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 20660..21103 +
1622928406.8815217-CDS-Ecto-sp9_F_contig1151:21613..218561622928406.8815217-CDS-Ecto-sp9_F_contig1151:21613..21856Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 21614..21856 +
1692277860.5611103-CDS-Ecto-sp9_F_contig1151:21613..218561692277860.5611103-CDS-Ecto-sp9_F_contig1151:21613..21856Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 21614..21856 +
1622928406.895555-CDS-Ecto-sp9_F_contig1151:22330..224821622928406.895555-CDS-Ecto-sp9_F_contig1151:22330..22482Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 22331..22482 +
1692277860.5705621-CDS-Ecto-sp9_F_contig1151:22330..224821692277860.5705621-CDS-Ecto-sp9_F_contig1151:22330..22482Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 22331..22482 +
1622928406.9088008-CDS-Ecto-sp9_F_contig1151:22717..228951622928406.9088008-CDS-Ecto-sp9_F_contig1151:22717..22895Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 22718..22895 +
1692277860.5782263-CDS-Ecto-sp9_F_contig1151:22717..228951692277860.5782263-CDS-Ecto-sp9_F_contig1151:22717..22895Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 22718..22895 +
1622928406.9230514-CDS-Ecto-sp9_F_contig1151:23284..234311622928406.9230514-CDS-Ecto-sp9_F_contig1151:23284..23431Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 23285..23431 +
1692277860.5886176-CDS-Ecto-sp9_F_contig1151:23284..234311692277860.5886176-CDS-Ecto-sp9_F_contig1151:23284..23431Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 23285..23431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1151.1287.1

>prot_Ecto-sp9_F_contig1151.1287.1 ID=prot_Ecto-sp9_F_contig1151.1287.1|Name=mRNA_Ecto-sp9_F_contig1151.1287.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=388bp
MPRGGLMLRDRHSSAGSSGLHRQQTERPSSGRNHELNASSAKDADGLCQP
DDNLKDRASLRVAHGGLEVGNDIRATCAEGQTSISKEGTKAGPVYSRWHE
IKESSLLANAWREKAEEVVKQTTGCGAKGTPSINCKRACYPPQWDHFRDR
LRKPIDWSKITVPQSLIGRVGADAAMERLKVPPTITTCAQTNCTREAPRT
AVAGPSARRDTRSSTKKRVSAYVSIKAREQIRSRRDHESWLSRVAGGPHT
STQDPLSLVGDCLEGNIRPKGNTERQPGMSPPPGGCEDSNHEKLDHLNII
EPHESEADERAAAERREFLSHAHLEGLVDSAQRLLEDEALRELRARTMRY
LFGHDHDEFEENDSDRGAGETTEAFARRCLAESKRIT*
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mRNA from alignment at Ecto-sp9_F_contig1151:20660..23431+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1151.1287.1 ID=mRNA_Ecto-sp9_F_contig1151.1287.1|Name=mRNA_Ecto-sp9_F_contig1151.1287.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2772bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1151:20660..23431+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGCGTGGCGGACTAATGCTACGAGACAGACACAGCAGTGCTGGTTC
GAGCGGTCTCCACAGGCAGCAGACAGAGCGCCCTTCCAGCGGGAGGAACC
ACGAGTTGAATGCTTCTTCCGCCAAGGACGCCGATGGGCTTTGCCAGCCT
GACGATAATCTGAAGGATCGCGCTTCTCTGAGAGTTGCCCACGGAGGGCT
AGAGGTCGGAAACGATATACGTGCAACATGCGCGGAAGGTCAAACGTCGA
TATCGAAGGAAGGAACGAAGGCTGGTCCGGTGTATTCGCGTTGGCACGAG
ATCAAGGAGAGTTCGTTGCTCGCGAACGCATGGAGAGAAAAGGCGGAGGA
GGTTGTGAAACAGACAACGGGTTGCGGGGCCAAAGGTACCCCTTCCATCA
ACTGCAAAAGAGCATGTTACCCTCCGCAATGGGACCACTTTCGGGTACGA
AGAGAAGGGAGAAGGTAACGTGTGTCAACTGTGAATCGCCTATTAGATCG
TGTCGAGAGTTGACTCCCCTGTACTCTGTTGACGTTGGTCACTGAATTTG
CACGTGAGCTTACAGGGATGCCGCCCTTGTTGGATTAGGGAATGTAGATC
GCAGTGTCCACTTGTCAGGCGCAGTGCCCAATTGCCAGGCCTAGCTGCCA
AAATGTACTCTCAACACGCATATATTAGGGGACGCCCTGCTCAGTATTTG
CTAGAAATGATGGGTTGCTCTTGTCGTTTCTCTGGCATTGTTGCCACCAC
GCTTCTTGCATCTGGCGTGATTATCGCTCCGGCCTACACTCTTGTGTTTT
GAGTACAATTCCCCCACCTGCCCCCCCCCCGCTCAAGCACGTGTTGCTCT
GCTGCTGCACCATTTTGAGGTCCTGAGCGTACGATTGATAGCACGTTAAG
ATTCGCCCCCCCATCATCTACGTTCTGCATTGATGCCGGACCCTACACAC
GCAGGATCGACTACGGAAACCAATTGATTGGTCCAAAATAACGGTACCAC
AATCTCTGATCGGGAGGGTTGGGGCCGACGCAGCAATGGAGAGATTGAAA
GTTCCACCCACGATTACGACGTGTGCGCAAACCAACTGTACCCGGGAAGC
CCCGAGAACAGCAGTGGCCGGGCCTTCGGCGCGAAGAGACACCCGGTCAT
CAACGAAAAAAAGAGTTTCTGCTTACGTTTCCATCAAGGCAAGAGAGGTT
GACATGTCGAACTTTTGTGTCGTGATTGAGAAAGTTGCACCAAGAGTCAT
CGGATGGGCGACTCACGTGGCAAGAGTGTTTCGGCCGAAACGTGGAGAAA
GCGCACGCAAAACGGTCAGGTGTGTGTGTAATGTTGTATCGAGGTGATGC
GGCTCTACCTCGATGGACTGTCGGAATCACGGCCCTGCCCATCTCAAGAC
CGCTGAGTGCCTTATTGTTGAAAACTTCAAGAACTCCGTCGAAACCGCCA
TACTTCGGAGTGCGCAAAGGCTCCAACCTTCGTGTCCAGACTCGACCAAG
GATTCTAAGTGTTCGAGACTGCTGAGTGTTTCGGAAAAGGGCGGTTCCCA
CTGCACCTTGTGTTGTTCCTCCTCCTGGTTCGTCCTCGTAACGTAACTGA
AGGGCCATATTGAATCGTGGCTGAAGGTTTCGCTGAATCTCGTGATTTTG
TGCGCTGTATTTCAGGCGGAGCAAATTCGAAGTCGTCGCGACCACGAGAG
TTGGCTGTCAAGGGTTGCTGGTGGACCCCACACATCCACTCAAGACCCGC
TTAGCCTCGTCGGAGATTGCCTAGAAGGCAACATACGTCCAAAGGGAAAC
ACCGAAAGACAGCCGGGAATGAGGTAACCGAGCTGTCCTGCAGAATCTCC
AGCCGTTGTATTCGAACACAGGAACCGCTTTACATGCGCTGGCCACCAGG
TGTGTTCGGAAGAATCGGCATGGCCTTGGCGGGCCCTAAACATGCGCTCT
CCAAACTGGGTCTCGAAATGTCGGCAAGGCTCGGCCGAAAACAATTTCCC
AAGCATGATGTTCTCTGTTCTCTCGCCTTTTTCCGTCTCCACTCCTCGTG
CCAAGAAGCCCTCCGCCTGGTGGCTGCGAGGATTCAAACCACGAGAAGTT
GGACCACCTCAACATTATAGAGCCACATGAGAGCGAAGCGGATGAACGAG
CCGCCGCCGAACGGAGAGAATTCCTGTCGCATGCACACCTGGAAGGACTC
GTCGACTCCGCACAGCGGCTGCTGGAGGACGAAGCGGTGAGCACGGCAGC
GGATGCTTGTCCTCGACGGCCGCCGCTCTCTGTTTCTGAGCGAAGACAAG
CTGGCGTGAAGGCCTGGTCGTCGTATTCGATTTTCTTTGTCACAATGCGC
CAACAACGTCTGCCTACGTGTTCTGGTATACGCTCCTCTTACCCTACTGT
AGACCCACCACTTAGGTTGGCCGTTTCATGGGGTACTGGGGCTAAGTTGC
AGTTGCCGATGATGGAAGAAGCGGAAGGCACCAAGCCACAACTACTACGT
ACACCTGATGCCAGAAAGTCTTTGAAAACCTTACATGGAATAAAACTAGA
CCGGCGAAAGACTGACGTTGGATACATACCGCCTGAGTCGCGCAGGATCA
CAAGGCGCGGGACGGCTTAGTGGAGCTGCGGGAACTTCGGGCTCGAACCA
TGCGGTACCTTTTCGGCCACGACCATGACGAGTTCGAGGAGAACGACTCC
GATCGAGGGGCTGGAGAGACCACAGAAGCCTTTGCTCGTCGCTGTTTGGC
TGAAAGCAAGAGGATTACCTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1151:20660..23431+

>mRNA_Ecto-sp9_F_contig1151.1287.1 ID=mRNA_Ecto-sp9_F_contig1151.1287.1|Name=mRNA_Ecto-sp9_F_contig1151.1287.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2328bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1151:20660..23431+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGCGTGGCGGACTAATGCTACGAGACAGACACAGCAGTGCTGGTTC
GAGCGGTCTCCACAGGCAGCAGACAGAGCGCCCTTCCAGCGGGAGGAACC
ACGAGTTGAATGCTTCTTCCGCCAAGGACGCCGATGGGCTTTGCCAGCCT
GACGATAATCTGAAGGATCGCGCTTCTCTGAGAGTTGCCCACGGAGGGCT
AGAGGTCGGAAACGATATACGTGCAACATGCGCGGAAGGTCAAACGTCGA
TATCGAAGGAAGGAACGAAGGCTGGTCCGGTGTATTCGCGTTGGCACGAG
ATCAAGGAGAGTTCGTTGCTCGCGAACGCATGGAGAGAAAAGGCGGAGGA
GGTTGTGAAACAGACAACGGGTTGCGGGGCCAAAGGTACCCCTTCCATCA
ACTGCAAAAGAGCATGTTACCCTCCGCAATGGGACCACTTTCGGATGCCG
CGTGGCGGACTAATGCTACGAGACAGACACAGCAGTGCTGGTTCGAGCGG
TCTCCACAGGCAGCAGACAGAGCGCCCTTCCAGCGGGAGGAACCACGAGT
TGAATGCTTCTTCCGCCAAGGACGCCGATGGGCTTTGCCAGCCTGACGAT
AATCTGAAGGATCGCGCTTCTCTGAGAGTTGCCCACGGAGGGCTAGAGGT
CGGAAACGATATACGTGCAACATGCGCGGAAGGTCAAACGTCGATATCGA
AGGAAGGAACGAAGGCTGGTCCGGTGTATTCGCGTTGGCACGAGATCAAG
GAGAGTTCGTTGCTCGCGAACGCATGGAGAGAAAAGGCGGAGGAGGTTGT
GAAACAGACAACGGGTTGCGGGGCCAAAGGTACCCCTTCCATCAACTGCA
AAAGAGCATGTTACCCTCCGCAATGGGACCACTTTCGGGATCGACTACGG
AAACCAATTGATTGGTCCAAAATAACGGTACCACAATCTCTGATCGGGAG
GGTTGGGGCCGACGCAGCAATGGAGAGATTGAAAGTTCCACCCACGATTA
CGACGTGTGCGCAAACCAACTGTACCCGGGAAGCCCCGAGAACAGCAGTG
GCCGGGCCTTCGGCGCGAAGAGACACCCGGTCATCAACGAAAAAAAGAGT
TTCTGCTTACGTTTCCATCAAGGCAAGAGAGGATCGACTACGGAAACCAA
TTGATTGGTCCAAAATAACGGTACCACAATCTCTGATCGGGAGGGTTGGG
GCCGACGCAGCAATGGAGAGATTGAAAGTTCCACCCACGATTACGACGTG
TGCGCAAACCAACTGTACCCGGGAAGCCCCGAGAACAGCAGTGGCCGGGC
CTTCGGCGCGAAGAGACACCCGGTCATCAACGAAAAAAAGAGTTTCTGCT
TACGTTTCCATCAAGGCAAGAGAGCAAATTCGAAGTCGTCGCGACCACGA
GAGTTGGCTGTCAAGGGTTGCTGGTGGACCCCACACATCCACTCAAGACC
CGCTTAGCCTCGTCGGAGATTGCCTAGAAGGCAACATACGTCCAAAGGGA
AACACCGAAAGACAGCCGGGAATGAGCAAATTCGAAGTCGTCGCGACCAC
GAGAGTTGGCTGTCAAGGGTTGCTGGTGGACCCCACACATCCACTCAAGA
CCCGCTTAGCCTCGTCGGAGATTGCCTAGAAGGCAACATACGTCCAAAGG
GAAACACCGAAAGACAGCCGGGAATGAGCCCTCCGCCTGGTGGCTGCGAG
GATTCAAACCACGAGAAGTTGGACCACCTCAACATTATAGAGCCACATGA
GAGCGAAGCGGATGAACGAGCCGCCGCCGAACGGAGAGAATTCCTGTCGC
ATGCACACCTGGAAGGACTCGTCGACTCCGCACAGCGGCTGCTGGAGGAC
GAAGCGCCCTCCGCCTGGTGGCTGCGAGGATTCAAACCACGAGAAGTTGG
ACCACCTCAACATTATAGAGCCACATGAGAGCGAAGCGGATGAACGAGCC
GCCGCCGAACGGAGAGAATTCCTGTCGCATGCACACCTGGAAGGACTCGT
CGACTCCGCACAGCGGCTGCTGGAGGACGAAGCGCTGCGGGAACTTCGGG
CTCGAACCATGCGGTACCTTTTCGGCCACGACCATGACGAGTTCGAGGAG
AACGACTCCGATCGAGGGGCTGGAGAGACCACAGAAGCCTTTGCTCGTCG
CTGTTTGGCTGAAAGCAAGAGGATTACCTAACTGCGGGAACTTCGGGCTC
GAACCATGCGGTACCTTTTCGGCCACGACCATGACGAGTTCGAGGAGAAC
GACTCCGATCGAGGGGCTGGAGAGACCACAGAAGCCTTTGCTCGTCGCTG
TTTGGCTGAAAGCAAGAGGATTACCTAA
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