mRNA_Ecto-sp9_F_contig11509.1281.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11509.1281.1
Unique NamemRNA_Ecto-sp9_F_contig11509.1281.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A095SCK6_9GAMM)

HSP 1 Score: 293 bits (749), Expect = 1.250e-99
Identity = 142/167 (85.03%), Postives = 148/167 (88.62%), Query Frame = 1
Query:    1 FLGVVFAGKLSAQK-EGVMKGCISLPLFVGVVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
            FLG  F GKL+ QK EG+MKGCI + LF   +L+SG   AEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTY+SL KGVPEPAARG  VIMYATQWCGVCKKARRYFNDNNI FTEYDID DPKAQARFDALEGKGVPVILVGKRRMNGFS EGFERIYR
Sbjct:    2 FLGGGFDGKLTTQKGEGIMKGCIKILLFACAMLLSGQVCAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYDSLGKGVPEPAARGGNVIMYATQWCGVCKKARRYFNDNNISFTEYDIDKDPKAQARFDALEGKGVPVILVGKRRMNGFSVEGFERIYR 168          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (family protein n=6 Tax=Alcanivorax TaxID=59753 RepID=A0A2E9TML7_9GAMM)

HSP 1 Score: 249 bits (636), Expect = 1.130e-82
Identity = 117/150 (78.00%), Postives = 132/150 (88.00%), Query Frame = 1
Query:   52 MKGCISLPLFVGVVLMSGLASAE-IYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
            MKGCI+  L   +VL  G+ASA+ IYTWTDAQGRVHFGDKPA+ND+A+ VNV+INTFESVTY+SLDKG+P  A    +V+MYATQWCGVC+KARRYFNDNNIPF EYDID DPKAQARFDAL+GKGVPVILVGKRRMNGFSA GFER+YR
Sbjct:    1 MKGCIARILIFSLVLAWGMASADGIYTWTDAQGRVHFGDKPAENDQAKTVNVQINTFESVTYQSLDKGLPASAEGSGKVVMYATQWCGVCRKARRYFNDNNIPFIEYDIDKDPKAQARFDALQGKGVPVILVGKRRMNGFSAAGFERLYR 150          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: DUF4124 (domain-containing protein n=1 Tax=Ketobacter sp. TaxID=2083498 RepID=A0A3L8BM30_9GAMM)

HSP 1 Score: 171 bits (434), Expect = 5.650e-52
Identity = 77/138 (55.80%), Postives = 100/138 (72.46%), Query Frame = 1
Query:   91 VLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAAR---GARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIY 495
            +L SGLASAEIY W D +GRVHFGD P  N   + + + +NT+ESV+Y+ ++    EP+ R     ++ MY+T WCG C KAR+YF  NNIPFTEYDI+ +P A+  +DA+  KGVPVILVGK+RMNGFS +GFE IY
Sbjct:   10 LLCSGLASAEIYKWVDDKGRVHFGDAPRKNQAVETIQLEVNTYESVSYDDVE--FAEPSVRKPLNQKITMYSTSWCGYCTKARQYFTSNNIPFTEYDIEKNPSARRAYDAMGAKGVPVILVGKKRMNGFSQQGFENIY 145          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (family protein n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A2E3D4P0_9GAMM)

HSP 1 Score: 169 bits (429), Expect = 3.350e-51
Identity = 80/147 (54.42%), Postives = 104/147 (70.75%), Query Frame = 1
Query:   55 KGCISLPLFVGVVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIY 495
            K  + +PL +  +  SG   AEIY W D  GRVHFGD PA++ + + V++ INTFESVTYE ++    EP+A   +V MY+T WCG CKKAR+YF+ NNI + EYDI+    A+  +D L GKGVPVILVGK+RMNGFS +GF+RIY
Sbjct:    3 KYVLVVPLCLVCLFTSGACVAEIYKWVDENGRVHFGDAPAEDQKVEQVDLEINTFESVTYEDIE--FAEPSAN-KKVTMYSTSWCGYCKKARKYFDANNIAYVEYDIEKSQSARRAYDRLGGKGVPVILVGKKRMNGFSEKGFQRIY 146          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (family protein n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A2E0HEP0_9GAMM)

HSP 1 Score: 167 bits (424), Expect = 2.250e-50
Identity = 75/140 (53.57%), Postives = 102/140 (72.86%), Query Frame = 1
Query:   76 LFVGVVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIY 495
            L +  VL  G A  EIY WTDAQG VHFGD P   D+A+ VN+++N++ +V+Y++++    + A    +V+MYAT WCG CK+ARRYF   +IP+TE+DI+ D +A+  +D L G+GVPVILVG+RRMNGFS  GFERIY
Sbjct:   13 LLLLAVLAPGGAYCEIYKWTDAQGNVHFGDSPQQPDQAEKVNIQVNSYRNVSYDNVEFFEGQRAQPSQKVVMYATSWCGYCKQARRYFKKYHIPYTEHDIEKDERARRMYDLLGGQGVPVILVGRRRMNGFSVAGFERIY 152          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (n=5 Tax=Pseudomonas TaxID=286 RepID=A0A397M8P5_PSEOL)

HSP 1 Score: 160 bits (406), Expect = 8.640e-48
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 1
Query:  106 LASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
            + SAEIY WTD  GRVHFGDKP D ++A+ +++++N++ESV+YE++    P   A   RV+MY+  WCG C++AR+YF  N I F EYDI+ D +A+  +D++ G GVPVILVG +RMNGFS  GF+ IY+
Sbjct:   15 ICSAEIYKWTDENGRVHFGDKPKDKEKAELLSIKVNSYESVSYEAI---TPVQGAESKRVVMYSAVWCGYCRQARQYFQQNGISFVEYDIEKDQRARKAYDSIGGNGVPVILVGDKRMNGFSIAGFQGIYQ 142          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (family protein n=3 Tax=Alcanivoracaceae TaxID=224372 RepID=A0A2E2DLW7_9GAMM)

HSP 1 Score: 160 bits (406), Expect = 1.140e-47
Identity = 78/149 (52.35%), Postives = 103/149 (69.13%), Query Frame = 1
Query:   52 MKGCISLPLFVGVVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
            MKG +SL LF    L +   S+ IY W D QG VHF D P++   ++++ ++INTFESVTY+SL   +P P+ +  RV+MY+  WCGVC KARRYF  NNI FTEYD++     +A F+ L GKGVP+ILVG +RMNGFSA  FE +Y+
Sbjct:    1 MKGLLSLLLFC---LCAVAWSSGIYRWVDDQGNVHFSDSPSEAHASESLKLKINTFESVTYDSLSVELP-PSEKRHRVVMYSATWCGVCTKARRYFEANNIGFTEYDVETSQTGKAGFEKLNGKGVPIILVGDKRMNGFSAAIFETLYQ 145          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: DUF4124 (domain-containing protein n=1 Tax=Pseudomonas sp. NCCP-436 TaxID=2842481 RepID=UPI001C8132A9)

HSP 1 Score: 159 bits (401), Expect = 4.960e-47
Identity = 70/131 (53.44%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  106 LASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
            +A+ EIY WTD  GRV+FGD+P + DRA+ + +R+N++ESV YE L    P  A+   RV MY+  WCG CK+AR+YF  + I F E+DI+ D +A+  +DAL G GVP+ILVG+RRMNGFS  GF+RIY+
Sbjct:   15 IATGEIYKWTDENGRVNFGDRPQNQDRAERLPLRVNSYESVNYEKLS---PTAASTSKRVFMYSAAWCGYCKQARQYFQQSGISFIEHDIEKDSRARQAYDALGGNGVPIILVGERRMNGFSVTGFQRIYQ 142          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (n=1 Tax=Alteromonadaceae bacterium 2753L.S.0a.02 TaxID=1403320 RepID=A0A559QT87_9ALTE)

HSP 1 Score: 158 bits (399), Expect = 9.980e-47
Identity = 68/136 (50.00%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   91 VLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
            V+ S   + +IY WTDAQGRVH+GD P D D+A+ +  +IN++E+V+Y++++      +A+  +V+MY+T WCG CKKARRYF    I +TEYDI+ +  A+  +D L G+GVPVI+VG +RMNGF+  GFERIY+
Sbjct:   10 VIASSAQAGDIYKWTDAQGRVHYGDAPEDKDKAEKLEPKINSYEAVSYDNIEY---YQSAKSQQVLMYSTSWCGYCKKARRYFKQQGIAYTEYDIEKNSAAKRDYDRLGGRGVPVIVVGDKRMNGFTVAGFERIYK 142          
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (n=1 Tax=Pseudomonas sihuiensis TaxID=1274359 RepID=A0A1H2NBU1_9PSED)

HSP 1 Score: 157 bits (398), Expect = 1.650e-46
Identity = 67/136 (49.26%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   88 VVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIY 495
            + ++  + SAEIY WTD  GRVHFGDKP D D+A+ ++++IN++ESV+YES     P       RV+MY+  WCG C++AR+YF  N I F EYDI+ D +A+  +D++ G GVPVILVG +R+NGF+   F+ IY
Sbjct:   14 IAILPLICSAEIYKWTDESGRVHFGDKPKDKDQAEQLSLKINSYESVSYESF---TPAQGTTSRRVVMYSAAWCGYCRQARQYFQQNGISFVEYDIEKDQRARKAYDSIGGNGVPVILVGNKRLNGFTVASFQSIY 146          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Glutaredoxin1.250e-9985.03n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A095SCK6_9... [more]
Glutaredoxin1.130e-8278.00family protein n=6 Tax=Alcanivorax TaxID=59753 Rep... [more]
DUF41245.650e-5255.80domain-containing protein n=1 Tax=Ketobacter sp. T... [more]
Glutaredoxin3.350e-5154.42family protein n=1 Tax=Pseudomonadales bacterium T... [more]
Glutaredoxin2.250e-5053.57family protein n=1 Tax=Pseudomonadales bacterium T... [more]
Glutaredoxin8.640e-4851.91n=5 Tax=Pseudomonas TaxID=286 RepID=A0A397M8P5_PSE... [more]
Glutaredoxin1.140e-4752.35family protein n=3 Tax=Alcanivoracaceae TaxID=2243... [more]
DUF41244.960e-4753.44domain-containing protein n=1 Tax=Pseudomonas sp. ... [more]
Glutaredoxin9.980e-4750.00n=1 Tax=Alteromonadaceae bacterium 2753L.S.0a.02 T... [more]
Glutaredoxin1.650e-4649.26n=1 Tax=Pseudomonas sihuiensis TaxID=1274359 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11509contigEcto-sp9_F_contig11509:1138..1638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score293.5
Seed ortholog evalue6.2e-77
Seed eggNOG ortholog1177181.T9A_01218
EggNOG free text desc.Domain of unknown function (DUF4124)
EggNOG OGs1N12W@1224,1SB6J@1236,1XQX0@135619,COG0695@1,COG0695@2
COG Functional cat.O
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size501
Cds size501
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928405.9465563-CDS-Ecto-sp9_F_contig11509:1137..16381622928405.9465563-CDS-Ecto-sp9_F_contig11509:1137..1638Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11509 1138..1638 +
1692277860.2804627-CDS-Ecto-sp9_F_contig11509:1137..16381692277860.2804627-CDS-Ecto-sp9_F_contig11509:1137..1638Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11509 1138..1638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11509.1281.1prot_Ecto-sp9_F_contig11509.1281.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11509 1138..1638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11509.1281.1

>prot_Ecto-sp9_F_contig11509.1281.1 ID=prot_Ecto-sp9_F_contig11509.1281.1|Name=mRNA_Ecto-sp9_F_contig11509.1281.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=167bp
FLGVVFAGKLSAQKEGVMKGCISLPLFVGVVLMSGLASAEIYTWTDAQGR
VHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYAT
QWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGK
RRMNGFSAEGFERIYR*
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mRNA from alignment at Ecto-sp9_F_contig11509:1138..1638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11509.1281.1 ID=mRNA_Ecto-sp9_F_contig11509.1281.1|Name=mRNA_Ecto-sp9_F_contig11509.1281.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11509:1138..1638+ (Ectocarpus species9 EcSCA_722f female)
TTTCTCGGTGTGGTATTTGCCGGTAAGCTGTCAGCGCAAAAGGAGGGGGT TATGAAGGGATGCATATCACTACCGCTGTTTGTCGGTGTCGTGCTGATGT CAGGATTGGCTAGCGCAGAGATCTATACCTGGACGGACGCGCAGGGGCGT GTCCATTTTGGTGACAAGCCTGCCGACAATGACCGGGCACAGGCCGTCAA CGTCCGCATCAATACATTCGAGAGCGTGACCTACGAAAGCCTCGACAAGG GCGTGCCGGAGCCGGCAGCGCGTGGGGCCAGGGTCATCATGTATGCCACT CAGTGGTGCGGGGTGTGCAAGAAAGCCCGTCGCTACTTCAATGACAATAA TATCCCCTTTACCGAATACGATATTGATAACGATCCGAAAGCCCAGGCAC GATTTGACGCACTGGAAGGCAAGGGGGTCCCCGTTATTCTGGTGGGCAAG CGACGGATGAACGGTTTCAGTGCCGAAGGGTTTGAAAGGATATACCGGTA A
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11509:1138..1638+

>mRNA_Ecto-sp9_F_contig11509.1281.1 ID=mRNA_Ecto-sp9_F_contig11509.1281.1|Name=mRNA_Ecto-sp9_F_contig11509.1281.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11509:1138..1638+ (Ectocarpus species9 EcSCA_722f female)
TTTCTCGGTGTGGTATTTGCCGGTAAGCTGTCAGCGCAAAAGGAGGGGGT
TATGAAGGGATGCATATCACTACCGCTGTTTGTCGGTGTCGTGCTGATGT
CAGGATTGGCTAGCGCAGAGATCTATACCTGGACGGACGCGCAGGGGCGT
GTCCATTTTGGTGACAAGCCTGCCGACAATGACCGGGCACAGGCCGTCAA
CGTCCGCATCAATACATTCGAGAGCGTGACCTACGAAAGCCTCGACAAGG
GCGTGCCGGAGCCGGCAGCGCGTGGGGCCAGGGTCATCATGTATGCCACT
CAGTGGTGCGGGGTGTGCAAGAAAGCCCGTCGCTACTTCAATGACAATAA
TATCCCCTTTACCGAATACGATATTGATAACGATCCGAAAGCCCAGGCAC
GATTTGACGCACTGGAAGGCAAGGGGGTCCCCGTTATTCTGGTGGGCAAG
CGACGGATGAACGGTTTCAGTGCCGAAGGGTTTGAAAGGATATACCGGTA
ATTTCTCGGTGTGGTATTTGCCGGTAAGCTGTCAGCGCAAAAGGAGGGGG
TTATGAAGGGATGCATATCACTACCGCTGTTTGTCGGTGTCGTGCTGATG
TCAGGATTGGCTAGCGCAGAGATCTATACCTGGACGGACGCGCAGGGGCG
TGTCCATTTTGGTGACAAGCCTGCCGACAATGACCGGGCACAGGCCGTCA
ACGTCCGCATCAATACATTCGAGAGCGTGACCTACGAAAGCCTCGACAAG
GGCGTGCCGGAGCCGGCAGCGCGTGGGGCCAGGGTCATCATGTATGCCAC
TCAGTGGTGCGGGGTGTGCAAGAAAGCCCGTCGCTACTTCAATGACAATA
ATATCCCCTTTACCGAATACGATATTGATAACGATCCGAAAGCCCAGGCA
CGATTTGACGCACTGGAAGGCAAGGGGGTCCCCGTTATTCTGGTGGGCAA
GCGACGGATGAACGGTTTCAGTGCCGAAGGGTTTGAAAGGATATACCGGT
AA
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