mRNA_Ecto-sp9_F_contig11509.1281.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A095SCK6_9GAMM) HSP 1 Score: 293 bits (749), Expect = 1.250e-99 Identity = 142/167 (85.03%), Postives = 148/167 (88.62%), Query Frame = 1
Query: 1 FLGVVFAGKLSAQK-EGVMKGCISLPLFVGVVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
FLG F GKL+ QK EG+MKGCI + LF +L+SG AEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTY+SL KGVPEPAARG VIMYATQWCGVCKKARRYFNDNNI FTEYDID DPKAQARFDALEGKGVPVILVGKRRMNGFS EGFERIYR
Sbjct: 2 FLGGGFDGKLTTQKGEGIMKGCIKILLFACAMLLSGQVCAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYDSLGKGVPEPAARGGNVIMYATQWCGVCKKARRYFNDNNISFTEYDIDKDPKAQARFDALEGKGVPVILVGKRRMNGFSVEGFERIYR 168
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (family protein n=6 Tax=Alcanivorax TaxID=59753 RepID=A0A2E9TML7_9GAMM) HSP 1 Score: 249 bits (636), Expect = 1.130e-82 Identity = 117/150 (78.00%), Postives = 132/150 (88.00%), Query Frame = 1
Query: 52 MKGCISLPLFVGVVLMSGLASAE-IYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
MKGCI+ L +VL G+ASA+ IYTWTDAQGRVHFGDKPA+ND+A+ VNV+INTFESVTY+SLDKG+P A +V+MYATQWCGVC+KARRYFNDNNIPF EYDID DPKAQARFDAL+GKGVPVILVGKRRMNGFSA GFER+YR
Sbjct: 1 MKGCIARILIFSLVLAWGMASADGIYTWTDAQGRVHFGDKPAENDQAKTVNVQINTFESVTYQSLDKGLPASAEGSGKVVMYATQWCGVCRKARRYFNDNNIPFIEYDIDKDPKAQARFDALQGKGVPVILVGKRRMNGFSAAGFERLYR 150
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: DUF4124 (domain-containing protein n=1 Tax=Ketobacter sp. TaxID=2083498 RepID=A0A3L8BM30_9GAMM) HSP 1 Score: 171 bits (434), Expect = 5.650e-52 Identity = 77/138 (55.80%), Postives = 100/138 (72.46%), Query Frame = 1
Query: 91 VLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAAR---GARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIY 495
+L SGLASAEIY W D +GRVHFGD P N + + + +NT+ESV+Y+ ++ EP+ R ++ MY+T WCG C KAR+YF NNIPFTEYDI+ +P A+ +DA+ KGVPVILVGK+RMNGFS +GFE IY
Sbjct: 10 LLCSGLASAEIYKWVDDKGRVHFGDAPRKNQAVETIQLEVNTYESVSYDDVE--FAEPSVRKPLNQKITMYSTSWCGYCTKARQYFTSNNIPFTEYDIEKNPSARRAYDAMGAKGVPVILVGKKRMNGFSQQGFENIY 145
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (family protein n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A2E3D4P0_9GAMM) HSP 1 Score: 169 bits (429), Expect = 3.350e-51 Identity = 80/147 (54.42%), Postives = 104/147 (70.75%), Query Frame = 1
Query: 55 KGCISLPLFVGVVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIY 495
K + +PL + + SG AEIY W D GRVHFGD PA++ + + V++ INTFESVTYE ++ EP+A +V MY+T WCG CKKAR+YF+ NNI + EYDI+ A+ +D L GKGVPVILVGK+RMNGFS +GF+RIY
Sbjct: 3 KYVLVVPLCLVCLFTSGACVAEIYKWVDENGRVHFGDAPAEDQKVEQVDLEINTFESVTYEDIE--FAEPSAN-KKVTMYSTSWCGYCKKARKYFDANNIAYVEYDIEKSQSARRAYDRLGGKGVPVILVGKKRMNGFSEKGFQRIY 146
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (family protein n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A2E0HEP0_9GAMM) HSP 1 Score: 167 bits (424), Expect = 2.250e-50 Identity = 75/140 (53.57%), Postives = 102/140 (72.86%), Query Frame = 1
Query: 76 LFVGVVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIY 495
L + VL G A EIY WTDAQG VHFGD P D+A+ VN+++N++ +V+Y++++ + A +V+MYAT WCG CK+ARRYF +IP+TE+DI+ D +A+ +D L G+GVPVILVG+RRMNGFS GFERIY
Sbjct: 13 LLLLAVLAPGGAYCEIYKWTDAQGNVHFGDSPQQPDQAEKVNIQVNSYRNVSYDNVEFFEGQRAQPSQKVVMYATSWCGYCKQARRYFKKYHIPYTEHDIEKDERARRMYDLLGGQGVPVILVGRRRMNGFSVAGFERIY 152
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (n=5 Tax=Pseudomonas TaxID=286 RepID=A0A397M8P5_PSEOL) HSP 1 Score: 160 bits (406), Expect = 8.640e-48 Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 1
Query: 106 LASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
+ SAEIY WTD GRVHFGDKP D ++A+ +++++N++ESV+YE++ P A RV+MY+ WCG C++AR+YF N I F EYDI+ D +A+ +D++ G GVPVILVG +RMNGFS GF+ IY+
Sbjct: 15 ICSAEIYKWTDENGRVHFGDKPKDKEKAELLSIKVNSYESVSYEAI---TPVQGAESKRVVMYSAVWCGYCRQARQYFQQNGISFVEYDIEKDQRARKAYDSIGGNGVPVILVGDKRMNGFSIAGFQGIYQ 142
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (family protein n=3 Tax=Alcanivoracaceae TaxID=224372 RepID=A0A2E2DLW7_9GAMM) HSP 1 Score: 160 bits (406), Expect = 1.140e-47 Identity = 78/149 (52.35%), Postives = 103/149 (69.13%), Query Frame = 1
Query: 52 MKGCISLPLFVGVVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
MKG +SL LF L + S+ IY W D QG VHF D P++ ++++ ++INTFESVTY+SL +P P+ + RV+MY+ WCGVC KARRYF NNI FTEYD++ +A F+ L GKGVP+ILVG +RMNGFSA FE +Y+
Sbjct: 1 MKGLLSLLLFC---LCAVAWSSGIYRWVDDQGNVHFSDSPSEAHASESLKLKINTFESVTYDSLSVELP-PSEKRHRVVMYSATWCGVCTKARRYFEANNIGFTEYDVETSQTGKAGFEKLNGKGVPIILVGDKRMNGFSAAIFETLYQ 145
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: DUF4124 (domain-containing protein n=1 Tax=Pseudomonas sp. NCCP-436 TaxID=2842481 RepID=UPI001C8132A9) HSP 1 Score: 159 bits (401), Expect = 4.960e-47 Identity = 70/131 (53.44%), Postives = 95/131 (72.52%), Query Frame = 1
Query: 106 LASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
+A+ EIY WTD GRV+FGD+P + DRA+ + +R+N++ESV YE L P A+ RV MY+ WCG CK+AR+YF + I F E+DI+ D +A+ +DAL G GVP+ILVG+RRMNGFS GF+RIY+
Sbjct: 15 IATGEIYKWTDENGRVNFGDRPQNQDRAERLPLRVNSYESVNYEKLS---PTAASTSKRVFMYSAAWCGYCKQARQYFQQSGISFIEHDIEKDSRARQAYDALGGNGVPIILVGERRMNGFSVTGFQRIYQ 142
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (n=1 Tax=Alteromonadaceae bacterium 2753L.S.0a.02 TaxID=1403320 RepID=A0A559QT87_9ALTE) HSP 1 Score: 158 bits (399), Expect = 9.980e-47 Identity = 68/136 (50.00%), Postives = 99/136 (72.79%), Query Frame = 1
Query: 91 VLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIYR 498
V+ S + +IY WTDAQGRVH+GD P D D+A+ + +IN++E+V+Y++++ +A+ +V+MY+T WCG CKKARRYF I +TEYDI+ + A+ +D L G+GVPVI+VG +RMNGF+ GFERIY+
Sbjct: 10 VIASSAQAGDIYKWTDAQGRVHYGDAPEDKDKAEKLEPKINSYEAVSYDNIEY---YQSAKSQQVLMYSTSWCGYCKKARRYFKQQGIAYTEYDIEKNSAAKRDYDRLGGRGVPVIVVGDKRMNGFTVAGFERIYK 142
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Match: Glutaredoxin (n=1 Tax=Pseudomonas sihuiensis TaxID=1274359 RepID=A0A1H2NBU1_9PSED) HSP 1 Score: 157 bits (398), Expect = 1.650e-46 Identity = 67/136 (49.26%), Postives = 95/136 (69.85%), Query Frame = 1
Query: 88 VVLMSGLASAEIYTWTDAQGRVHFGDKPADNDRAQAVNVRINTFESVTYESLDKGVPEPAARGARVIMYATQWCGVCKKARRYFNDNNIPFTEYDIDNDPKAQARFDALEGKGVPVILVGKRRMNGFSAEGFERIY 495
+ ++ + SAEIY WTD GRVHFGDKP D D+A+ ++++IN++ESV+YES P RV+MY+ WCG C++AR+YF N I F EYDI+ D +A+ +D++ G GVPVILVG +R+NGF+ F+ IY
Sbjct: 14 IAILPLICSAEIYKWTDESGRVHFGDKPKDKDQAEQLSLKINSYESVSYESF---TPAQGTTSRRVVMYSAAWCGYCRQARQYFQQNGISFVEYDIEKDQRARKAYDSIGGNGVPVILVGNKRLNGFTVASFQSIY 146 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11509.1281.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11509.1281.1 >prot_Ecto-sp9_F_contig11509.1281.1 ID=prot_Ecto-sp9_F_contig11509.1281.1|Name=mRNA_Ecto-sp9_F_contig11509.1281.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=167bp FLGVVFAGKLSAQKEGVMKGCISLPLFVGVVLMSGLASAEIYTWTDAQGRback to top mRNA from alignment at Ecto-sp9_F_contig11509:1138..1638+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11509.1281.1 ID=mRNA_Ecto-sp9_F_contig11509.1281.1|Name=mRNA_Ecto-sp9_F_contig11509.1281.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11509:1138..1638+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11509:1138..1638+ >mRNA_Ecto-sp9_F_contig11509.1281.1 ID=mRNA_Ecto-sp9_F_contig11509.1281.1|Name=mRNA_Ecto-sp9_F_contig11509.1281.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11509:1138..1638+ (Ectocarpus species9 EcSCA_722f female)back to top |