mRNA_Ecto-sp9_F_contig1150.1277.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.540e-10 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1
Query: 4 LQGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELLWRQ 135
L GKYAEA+ L LRAI+IG+K LGPDHPDLA WLNNRA LL +Q
Sbjct: 8 LGGKYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRAGLLKKQ 51
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 3.490e-10 Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1
Query: 4 LQGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELL 126
L+G +AEA+ LRAIEIGEK LGP+HPDLAVWLNNRAELL
Sbjct: 642 LEGNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELL 682
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 4.790e-10 Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1
Query: 1 MLQGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRA 117
+ QGKY EA+ L LRA+EIGEKTLGPDHP LAVWLNN+A
Sbjct: 5 VFQGKYEEADPLYLRAVEIGEKTLGPDHPTLAVWLNNKA 43
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: PK_Tyr_Ser-Thr (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T5_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.010e-9 Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1
Query: 4 LQGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELLWRQ 135
LQGKYAEA+ LILRA++IG+ LGPDHPDLA+WL NRA LL +Q
Sbjct: 552 LQGKYAEADPLILRAMDIGKSPLGPDHPDLALWLGNRACLLGQQ 595
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: Kinesin (light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 5.160e-9 Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1
Query: 10 GKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELLWRQ 135
G+ EA+ L LRAIE+GEK LGPDHPDLA WLNN+A LL +Q
Sbjct: 8 GEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLLRKQ 49
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 1.550e-8 Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query: 7 QGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELL 126
QGKY EA+ L LR IE+GE TLGPDHPD+A+ LNNRAELL
Sbjct: 297 QGKYVEADRLCLRDIEMGEDTLGPDHPDVAIRLNNRAELL 336
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 2.440e-8 Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 4 LQGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELLWRQ 135
L GKYAEA+ L LRAIEIGE TLGPDHP LA LNNRA LL Q
Sbjct: 611 LMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 3.630e-8 Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 7 QGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAEL 123
QGKY E + L LRAIEIGEKTLGPDHP LA LNNRA +
Sbjct: 50 QGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRARM 88
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 5.390e-8 Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 10 GKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELLWRQ 135
GKY EA+ L+ RAIEIGE++LGP+HPDL WLNN A LL Q
Sbjct: 1 GKYDEAKPLVQRAIEIGEESLGPNHPDLVSWLNNLAVLLINQ 42
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 3.670e-7 Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query: 7 QGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELL 126
QGK+AEA+ L LRAIE+ EK LG DHPDLA +NNRAELL
Sbjct: 340 QGKHAEADPLYLRAIEVAEKMLGRDHPDLATSINNRAELL 379 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1150.1277.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1150.1277.1 >prot_Ecto-sp9_F_contig1150.1277.1 ID=prot_Ecto-sp9_F_contig1150.1277.1|Name=mRNA_Ecto-sp9_F_contig1150.1277.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=218bp MLQGKYAEAELLILRAIEIGEKTLGPDHPDLAVWLNNRAELLWRQGKYNEback to top mRNA from alignment at Ecto-sp9_F_contig1150:22438..24953+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1150.1277.1 ID=mRNA_Ecto-sp9_F_contig1150.1277.1|Name=mRNA_Ecto-sp9_F_contig1150.1277.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1150:22438..24953+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1150:22438..24953+ >mRNA_Ecto-sp9_F_contig1150.1277.1 ID=mRNA_Ecto-sp9_F_contig1150.1277.1|Name=mRNA_Ecto-sp9_F_contig1150.1277.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1150:22438..24953+ (Ectocarpus species9 EcSCA_722f female)back to top |