mRNA_Ecto-sp9_F_contig115.1273.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig115.1273.1
Unique NamemRNA_Ecto-sp9_F_contig115.1273.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI)

HSP 1 Score: 568 bits (1464), Expect = 3.010e-205
Identity = 261/270 (96.67%), Postives = 264/270 (97.78%), Query Frame = 1
Query:    1 MTLAKFFLVLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 810
            MTLAKFFL+LVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGD+PTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTS+ALPLSNV    G EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVY GTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK
Sbjct:    1 MTLAKFFLLLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDVPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSDALPLSNVTTYSG-EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYLGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 269          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: EGF-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN50_9STRA)

HSP 1 Score: 319 bits (818), Expect = 2.190e-106
Identity = 147/258 (56.98%), Postives = 174/258 (67.44%), Query Frame = 1
Query:   70 GCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPST-----------DVDETDCFNV-TSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 807
            GC   N CNGHG C+     C CYEGWGAD+D++LY+A DCSARVCP+G AWGD+PT   +AH   ECSG GLCDRDSG C CF GF G AC+R  CP++CS HGRC+++K +    NALPLS+     G ++   TWDE+ IFGCVCDS W VGL A +TQ  EWFGPDCSLRHCPSG+DP+             +   +C  V T   V   + G  GNLCHVDCS RG CDYATG+C+CF GYYG NCG   VLA
Sbjct:   38 GCDQHNNCNGHGVCSQQDAVCLCYEGWGADSDISLYKAQDCSARVCPSGPAWGDVPTAKYTAHAALECSGMGLCDRDSGVCRCFTGFEGDACQRMACPNNCSGHGRCMSLKNMVNEPNALPLSSNAHEYGGDELATTWDEDRIFGCVCDSSWAVGLKATETQAVEWFGPDCSLRHCPSGNDPAQLQLTPAHPAEKPILTINCEGVATPGVVEKDSEGAEGNLCHVDCSGRGVCDYATGVCQCFNGYYGQNCGTVDVLA 295          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPX8_PYTOL)

HSP 1 Score: 312 bits (799), Expect = 2.120e-104
Identity = 137/238 (57.56%), Postives = 171/238 (71.85%), Query Frame = 1
Query:   91 CNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVL 804
            CNGHG CNT T+TCTC+EG+GA TD+ +Y+A DCS RVCPAG +WG IPT    AH   ECS  G+CDR SG+C+C+ G+ G+AC+RS C + CS HGRCV+M+ +A  ++A PLS      G ED T TWD+  IFGC+CDS W VGLG+GQ Q+ EWFGPDCSL  CP+GDDP T VDETDC   T++     + G+ GN CHVDC+NRG CDY +G C CF+G+YG NC   S +
Sbjct:    5 CNGHGRCNTATKTCTCFEGYGAATDVAVYKAPDCSQRVCPAGPSWGGIPTDETVAHALAECSDMGVCDRSSGQCKCYRGYEGSACQRSTCLNGCSGHGRCVSMREMATITSAFPLSPAATYEGAED-TTTWDQNRIFGCLCDSSWAVGLGSGQRQQSEWFGPDCSLLRCPTGDDPLTAVDETDCNGKTATDST--SVGQPGNRCHVDCANRGICDYTSGTCMCFSGFYGSNCASLSPV 239          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ07_9STRA)

HSP 1 Score: 310 bits (794), Expect = 5.090e-103
Identity = 138/243 (56.79%), Postives = 168/243 (69.14%), Query Frame = 1
Query:   91 CNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALP--LSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFN-VTSSSVYPG-TAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 807
            CNGHGTCNT T  C CY+GWG+ +D+T YRA DCS RVCP+G AW D  T + +AH   ECS  G+CDR +G+C CF G+ G AC+RS CP++CS HG+CV++  +A  +NA P  + +     G  +   TWDE+ IFGCVCDS W V L +G TQEPEWFG DCSLRHC SGDDP T  DETDC   V +     G T G AGNLCHVDC+NRG C+Y TG+C+CF G+YG  C  QS LA
Sbjct:   36 CNGHGTCNTATTQCACYDGWGSSSDVTTYRAPDCSKRVCPSGNAWADAATATNTAHALAECSNAGICDRTTGKCRCFTGYDGEACQRSACPNECSGHGKCVSIAQMASENNAQPVDIESPAFTYGGSEAVATWDEDKIFGCVCDSSWTVSLASGATQEPEWFGADCSLRHCASGDDPMTTADETDCVGKVRNGQTVAGRTGGVAGNLCHVDCANRGICNYNTGICDCFDGFYGVACTLQSELA 278          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G2_9STRA)

HSP 1 Score: 305 bits (782), Expect = 1.600e-101
Identity = 141/247 (57.09%), Postives = 169/247 (68.42%), Query Frame = 1
Query:   73 CSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDP-STDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 810
            C   N+CNGHG C   T TC CYEGWGA TD+ LY+  DCS R CP+G AW D+ + S +AH   ECSG+G C++ +G C+C  GF+G AC+R GC  DCS HG+CV+MK +A   NALPLS      G E  T  WD++ I+GCVCDS W VGLG GQ QEPEWFGP CSLRHCPSGDDP +T VDET+C  VT++  Y    G  GNLC VDC+NRG CD  TG C C+TG YG +C   S LA+
Sbjct:   18 CIDMNFCNGHGHCEPATDTCDCYEGWGAKTDVALYKLHDCSGRTCPSGPAWADVASDSKTAHAPAECSGKGTCNKATGTCKCVSGFSGDACQRFGCLYDCSGHGQCVSMKKMATMPNALPLSKPATYTGLET-TERWDQDRIYGCVCDSSWPVGLGPGQRQEPEWFGPWCSLRHCPSGDDPYTTHVDETNCTGVTAAGGYG--VGEKGNLCQVDCANRGKCDTETGECSCWTGSYGHDCTLLSALAR 261          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: EGF-like (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZL0_9STRA)

HSP 1 Score: 305 bits (782), Expect = 1.840e-101
Identity = 138/246 (56.10%), Postives = 167/246 (67.89%), Query Frame = 1
Query:   73 CSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAG--RAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVL 804
            CS  + CNGHG C T ++TC C+EG+GA +D+T Y++ DCS RVCP+G +W  IPT + SAH   ECS  G CDR SG+C CF G+ GAAC+R  CP+ CS HG+CV+M+A+A  +NA PLS      G E  T TWD+  IFGCVCDS W+VGL AGQ Q  +WFG DCSL  CPSGDDP T VDETDC       + PG  G    GN CH+DCSNRG CDY TG C CF+G+YG NC   S +
Sbjct:   24 CSALSNCNGHGRCVTASKTCICFEGYGATSDITSYKSPDCSKRVCPSGPSWAGIPTAANSAHPRTECSDAGYCDRSSGQCRCFAGYDGAACQRYACPNGCSGHGQCVSMQAMAELTNAAPLSAATTYAGAEA-TTTWDQNRIFGCVCDSSWDVGLAAGQRQSSQWFGADCSLMRCPSGDDPMTTVDETDCGGK----LAPGGVGTGETGNKCHIDCSNRGKCDYTTGTCACFSGFYGSNCASLSPV 264          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D842_CAFRO)

HSP 1 Score: 304 bits (779), Expect = 1.390e-100
Identity = 145/273 (53.11%), Postives = 173/273 (63.37%), Query Frame = 1
Query:   67 AGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDV-DETDCFNVTSSS---------------VYPGTA---------GRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 810
            + C+  N CN HGTC+   R C C++G+G+++DL +Y+A DCS RVCPA KAW DIPTG+ +AH   ECS  G+CDR +G C CF GF G AC+RS CP+ CS HG+CV+M  +A  +NA P+       G E  TVTWDE  IFGCVCDS W VG GAGQTQ   WFG DCS R CPSGDD ST++ DETDC   T +                  PGT          G  GN CHVDCSNRG CD  +GLC+CF GYYG NCG +S LAK
Sbjct:   20 SACAHLNNCNSHGTCDETNRVCRCFDGFGSESDLAVYKAPDCSQRVCPADKAWVDIPTGATTAHNNAECSNAGICDRGTGRCRCFAGFEGDACQRSSCPNGCSGHGKCVSMSQMAGEANAFPVGPATTYGGFES-TVTWDENKIFGCVCDSIWTVGFGAGQTQATSWFGADCSQRRCPSGDDASTELRDETDCSYYTDNGETWHGAVLSDGTPDRANPGTGVTGTLGVDFGAVGNKCHVDCSNRGICDRTSGLCKCFRGYYGQNCGLRSALAK 291          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: EGF-like (domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WEK2_PHYIN)

HSP 1 Score: 302 bits (774), Expect = 4.220e-100
Identity = 141/267 (52.81%), Postives = 181/267 (67.79%), Query Frame = 1
Query:   28 LVSSWIFTTVQGNAG------CSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAG--NLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVL 804
            +V+S I   V+G  G      C+  N CN HG C+  T+TCTCYEG+GA TD+T YR+ DCS R CPAG +WG IP  + ++H ++ECSG G+CDR++G C C+ G+ G+AC+RS CP+ CS HG+C++M+ LAV  +A PLS      G +    TWD++ I GC+CDS W VGLGAG++Q  ++FGPDCS  HCPSGDDP T VDET C  +    V  G AG  G  NLCHVDC+NRG CDY TG C CF+G+YG NC   S L
Sbjct:   13 VVASAICPLVRGQLGVPTGNLCAALNNCNAHGRCDALTKTCTCYEGFGAPTDITNYRSPDCSMRTCPAGPSWGGIPNSATTSHPKEECSGAGVCDRNTGTCFCYYGYEGSACQRSSCPNSCSGHGQCMSMRELAVEPSAFPLSPPTKYEG-DVRATTWDQDRIQGCLCDSTWPVGLGAGESQLSQYFGPDCSKMHCPSGDDPMTAVDETKCVGI----VATGGAGTGGPDNLCHVDCANRGICDYNTGECSCFSGFYGSNCASLSPL 274          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Aste57867_11942 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUX1_9STRA)

HSP 1 Score: 300 bits (768), Expect = 3.440e-99
Identity = 141/266 (53.01%), Postives = 183/266 (68.80%), Query Frame = 1
Query:    7 LAKFFLVLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDS-KWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSV 801
            L    LVL ++  +  V G+  C+    CNGHG CNT T+ CTC  GWG+ TD+++ + ADCS+RVCP+G +W  IPT S +AH   ECS  GLC+  +GEC+CF GF GAACER+ CP+DCS HG CV+M+ +A+ SNA+PLS     +G    T TWD++ +FGCVCD+  W VGL +GQ Q  ++FG DCSL HCPSG+DP T  DE DC NV +   + GT G +GN+C V+CSNRG CD+ TGLC CF G+YG NCG  S+
Sbjct:   13 LVSLLLVLPAARGYNPVGGDL-CNSLGDCNGHGFCNTATKVCTCQNGWGSATDISINKLADCSSRVCPSGPSWSSIPTASDTAHTVTECSDSGLCNTATGECKCFPGFGGAACERATCPNDCSGHGICVSMRNMAMMSNAMPLSPPTTYQGFAL-TTTWDQDRLFGCVCDAPSWTVGLASGQVQAAQYFGADCSLMHCPSGNDPMTTADELDCSNVAAPGGF-GT-GASGNICFVECSNRGVCDFTTGLCTCFDGFYGANCGTMSI 274          
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: EGF-like (domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7I9_9STRA)

HSP 1 Score: 299 bits (766), Expect = 6.040e-99
Identity = 135/247 (54.66%), Postives = 173/247 (70.04%), Query Frame = 1
Query:   73 CSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCS--ARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 807
            C+  N CN HG C+  T+TCTCYEG+GA TD+T YR+ DCS   R CPAG +WG IPT + ++H + ECSG G+CDR SG C C+ G+ G+AC+RS CP+ CS HG+C++M+ +A+ S+A PLS      G +    TWD++ I GC+CDS W VGLGAG++Q  ++FGPDCS  HCPSGDDP T VDETDC  + ++    G  G A NLCHVDC+NRG CDY+ G C CF G+YG NC   S LA
Sbjct:   28 CASLNNCNAHGRCDALTKTCTCYEGFGAPTDVTNYRSPDCSLRTRTCPAGPSWGGIPTSATTSHPKAECSGAGICDRSSGTCICYYGYEGSACQRSSCPNSCSGHGQCLSMREMAMESSAFPLSPPTKYEG-DVTATTWDQDRIQGCLCDSSWPVGLGAGESQLAQYFGPDCSRMHCPSGDDPMTAVDETDCEGIIAAGG--GGTGAADNLCHVDCANRGICDYSRGECSCFPGFYGSNCASLSPLA 271          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.010e-20596.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
EGF-like2.190e-10656.98domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized2.120e-10457.56protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical5.090e-10356.79protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486... [more]
Hypothetical1.600e-10157.09protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
EGF-like1.840e-10156.10domain-containing protein n=1 Tax=Pythium brassicu... [more]
Uncharacterized1.390e-10053.11protein n=1 Tax=Cafeteria roenbergensis TaxID=3365... [more]
EGF-like4.220e-10052.81domain n=1 Tax=Phytophthora infestans TaxID=4787 R... [more]
Aste57867_119423.440e-9953.01protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
EGF-like6.040e-9954.66domain-containing protein n=1 Tax=Phytophthora pal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig115contigEcto-sp9_F_contig115:50628..53020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.2
Seed ortholog evalue2.2e-84
Seed eggNOG ortholog2880.D7FYV5
EggNOG free text desc.EGF-like domain
EggNOG OGs2A4YC@1,2RY8D@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted EGF-like domain protein
Ec32 orthologEc-19_002620.1
Exons6
Model size810
Cds size462
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928404.0268495-CDS-Ecto-sp9_F_contig115:50627..507551622928404.0268495-CDS-Ecto-sp9_F_contig115:50627..50755Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 50628..50755 +
1692277859.786484-CDS-Ecto-sp9_F_contig115:50627..507551692277859.786484-CDS-Ecto-sp9_F_contig115:50627..50755Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 50628..50755 +
1622928404.227338-CDS-Ecto-sp9_F_contig115:51248..514011622928404.227338-CDS-Ecto-sp9_F_contig115:51248..51401Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 51249..51401 +
1692277859.7974565-CDS-Ecto-sp9_F_contig115:51248..514011692277859.7974565-CDS-Ecto-sp9_F_contig115:51248..51401Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 51249..51401 +
1622928404.2387-CDS-Ecto-sp9_F_contig115:51864..520241622928404.2387-CDS-Ecto-sp9_F_contig115:51864..52024Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 51865..52024 +
1692277859.8049185-CDS-Ecto-sp9_F_contig115:51864..520241692277859.8049185-CDS-Ecto-sp9_F_contig115:51864..52024Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 51865..52024 +
1622928404.2581754-CDS-Ecto-sp9_F_contig115:52220..522391622928404.2581754-CDS-Ecto-sp9_F_contig115:52220..52239Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 52221..52239 +
1692277859.8121994-CDS-Ecto-sp9_F_contig115:52220..522391692277859.8121994-CDS-Ecto-sp9_F_contig115:52220..52239Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 52221..52239 +
1622928404.2714806-CDS-Ecto-sp9_F_contig115:52354..523561622928404.2714806-CDS-Ecto-sp9_F_contig115:52354..52356Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 52355..52356 +
1692277859.819701-CDS-Ecto-sp9_F_contig115:52354..523561692277859.819701-CDS-Ecto-sp9_F_contig115:52354..52356Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 52355..52356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928404.28712-UTR-Ecto-sp9_F_contig115:52356..525751622928404.28712-UTR-Ecto-sp9_F_contig115:52356..52575Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 52357..52575 +
1692277859.827401-UTR-Ecto-sp9_F_contig115:52356..525751692277859.827401-UTR-Ecto-sp9_F_contig115:52356..52575Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 52357..52575 +
1622928404.298968-UTR-Ecto-sp9_F_contig115:52891..530201622928404.298968-UTR-Ecto-sp9_F_contig115:52891..53020Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 52892..53020 +
1692277859.8348296-UTR-Ecto-sp9_F_contig115:52891..530201692277859.8348296-UTR-Ecto-sp9_F_contig115:52891..53020Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 52892..53020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig115.1273.1prot_Ecto-sp9_F_contig115.1273.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig115 50628..52356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig115.1273.1

>prot_Ecto-sp9_F_contig115.1273.1 ID=prot_Ecto-sp9_F_contig115.1273.1|Name=mRNA_Ecto-sp9_F_contig115.1273.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=154bp
MTLAKFFLVLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGW
GADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRD
SGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCV
LRG*
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mRNA from alignment at Ecto-sp9_F_contig115:50628..53020+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig115.1273.1 ID=mRNA_Ecto-sp9_F_contig115.1273.1|Name=mRNA_Ecto-sp9_F_contig115.1273.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2393bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:50628..53020+ (Ectocarpus species9 EcSCA_722f female)
ATGACGCTGGCGAAGTTCTTCTTGGTCTTGGTGTCCTCGTGGATCTTCAC CACCGTGCAAGGCAACGCCGGGTGCTCACTCTTCAACTGGTGCAACGGGC ATGGCACGTGCAACACAGGCACCAGAACGTAAGTACGTGCAGCAGGTGTG TGGTGTGTCACGAGCTGTTCTTCCAATAGGAATGTATGGGGGTCATGCAA TGGTGGTGTCCCGCGTGCGCAGTCTACTGTGTATCTGCAACAACTTGTCG CTAACTTGTCGTCGTATTGAAAATCACTGCTGTGTGGATCAGTAGCATAC ACAAATGAAGACTATGGCTGCTGTACAAGTCTACATGCGCACTTTACAGT ACGTAGTACCACAGTAATCTAGGTGGATGCATTTAGCTGCGTTACCCTAT AAAATGGGGTCTATTTGCCAACGACTTTGGTCTGGATTTTGCTGAATCCT TTCTCGCCTGTTGGCGACAAATGACATACATCCGCTTCCAAGCACACTGG TCTGGACGGATATTCCCGACTACAACAGCAGTACAGCTAAGTAGTGCAGT AGCTGCAGGAGCTTGGTCGCTTGCAGGGCATGGAGTATTCTTATGTGAAA CTTCGATGGCTGTTATCCCAGGTGCACGTGTTATGAGGGCTGGGGGGCAG ACACCGACCTTACCCTGTACCGTGCTGCGGATTGTTCTGCGCGAGTATGC CCTGCCGGCAAGGCGTGGGGAGACATACCAACAGGATCCTTGAGCGCACA CCAGGAGCAGGAATGTTCCGGCAGGTCGGTATTTGTAGCCAATACCGACG TTTTCATGTACGCACCAGATCAACGACGCGACAATTTCCGCCCGATTTAT CAATACAGCAGACATTGCATTGCGGGGCGATCCACCGGCATTCATTCATT CATGGAACGCCTCTTTGGTCGCGTCCAACACATCTTGTTGAACTTGGAAA TGAATGGATGCCCCGGAATAGGGAGTTGGGAGAGAGAGACGGGTTCGTAA CAGTTAACACCGCGCCTTGTAGTCAATGTGACGGGTGAGATGATGTGTGT TCCGTTTGTGTGCCCCTCCCCAACGCGTGGCCTAGAAACCGAATAGGAAT GAAGCAATTCGAAAGAAACAACAGTAATACTTTGTAGTCCCGGCGGTGTA TGATTCACTCCATGTTCACAGGCGCACCCACCGAATCACGTTTCAATGTC ACCCTCTCGTTTGGTGACCACCCCGTGCCCCACGCAGGGGACTTTGTGAT CGAGACAGTGGAGAATGCGAATGTTTTGACGGATTTACTGGAGCAGCCTG CGAGCGATCTGGCTGCCCTGACGATTGTTCAGACCACGGCCGTTGCGTCA ACATGAAAGCCTTAGCAGTGACTTCAAATGCACTCCCTCTCTCCAACGTG ACTACATATTCAGGCAAGACGATACTAAGATGAAACGTTTGGGTGATGGT GAGCAGGGTGCGGCCGCACATCAGAGAAAGCCACTCCCTCAGTTAATTGG AAGTTGTTTTAGGCAGGCACCAATGAAAGGTCGAGAGTAAGTCTGGGTAA CTGAACAGAACTATTATTCAGCTTCGGCAGTGGACGATGCGAGGTTTGCG TACTCCGCGGTTGTCGAGACTTTGTTCGAAGCTCACCTTCCCGTTACAAG CTCTGTTCGTATTCGAAGGGCTCACGTAAGCCTGCCGCCACTCTTGTTTC AATCTTTTCATCCCCCAAAACGTGCAGGAGAAGACGACACGGTCACATGG GATGAAGAAATGATCTTCGGGTGCGTGTGCGATTCAAAGTGGGAGGTCGG GCTTGGTGCGGGGCAAACGCAAGAGCCTGAGTGGTTTGGGCCCGACTGCT CTTTGAGGCATTGCCCTAGCGGTGACGATCCGTCCACTGATGTGGACGAG ACGGACTGTTTCAACGTTACGTCTTCGTCGGTCTACCCAGGCACCGCGGT GAGCCTAGACCCACACATGATATATCTTGATCGATCAGCTTCGGTGACCG GGAGATGATGGCTCGGTTAGTGCTGCAGATGATATGGTCGTCATTTCTCG TAAATGGGGAGCAGGGCGTCAGGGCACGCGTGGTGCTCGGCGGTTGTCAG GGGTAGTTGGTTCACCGAATGACTGCCCAAACAAGAACACAACAACTTCG GTGCTCCACACATGCCAACGCCTTCGATTAACCAACGATAGACCCATGCG ATCGTGGGTGAGTCGAAAGCGACTATTGAAACATCTCTTGCATGTGTTGC TCGTGGAACAACAGGGCCGTGCGGGCAACCTCTGCCACGTGGACTGCTCA AATCGAGGGACGTGCGACTACGCAACAGGCCTATGTGAATGTTTCACAGG ATACTACGGTTTCAACTGCGGGCAGCAATCCGTGCTCGCAAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig115:50628..53020+

>mRNA_Ecto-sp9_F_contig115.1273.1 ID=mRNA_Ecto-sp9_F_contig115.1273.1|Name=mRNA_Ecto-sp9_F_contig115.1273.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:50628..53020+ (Ectocarpus species9 EcSCA_722f female)
ATGACGCTGGCGAAGTTCTTCTTGGTCTTGGTGTCCTCGTGGATCTTCAC
CACCGTGCAAGGCAACGCCGGGTGCTCACTCTTCAACTGGTGCAACGGGC
ATGGCACGTGCAACACAGGCACCAGAACATGACGCTGGCGAAGTTCTTCT
TGGTCTTGGTGTCCTCGTGGATCTTCACCACCGTGCAAGGCAACGCCGGG
TGCTCACTCTTCAACTGGTGCAACGGGCATGGCACGTGCAACACAGGCAC
CAGAACGTGCACGTGTTATGAGGGCTGGGGGGCAGACACCGACCTTACCC
TGTACCGTGCTGCGGATTGTTCTGCGCGAGTATGCCCTGCCGGCAAGGCG
TGGGGAGACATACCAACAGGATCCTTGAGCGCACACCAGGAGCAGGAATG
TTCCGGCAGGTGCACGTGTTATGAGGGCTGGGGGGCAGACACCGACCTTA
CCCTGTACCGTGCTGCGGATTGTTCTGCGCGAGTATGCCCTGCCGGCAAG
GCGTGGGGAGACATACCAACAGGATCCTTGAGCGCACACCAGGAGCAGGA
ATGTTCCGGCAGGGGACTTTGTGATCGAGACAGTGGAGAATGCGAATGTT
TTGACGGATTTACTGGAGCAGCCTGCGAGCGATCTGGCTGCCCTGACGAT
TGTTCAGACCACGGCCGTTGCGTCAACATGAAAGCCTTAGCAGTGACTTC
AAATGCACTCCCTCTCTCCAACGGGACTTTGTGATCGAGACAGTGGAGAA
TGCGAATGTTTTGACGGATTTACTGGAGCAGCCTGCGAGCGATCTGGCTG
CCCTGACGATTGTTCAGACCACGGCCGTTGCGTCAACATGAAAGCCTTAG
CAGTGACTTCAAATGCACTCCCTCTCTCCAACGTTTGCGTACTCCGCGGT
TGTTTGCGTACTCCGCGGTTGAGA
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