mRNA_Ecto-sp9_F_contig115.1273.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI) HSP 1 Score: 568 bits (1464), Expect = 3.010e-205 Identity = 261/270 (96.67%), Postives = 264/270 (97.78%), Query Frame = 1
Query: 1 MTLAKFFLVLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 810
MTLAKFFL+LVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGD+PTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTS+ALPLSNV G EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVY GTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK
Sbjct: 1 MTLAKFFLLLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDVPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSDALPLSNVTTYSG-EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYLGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 269
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: EGF-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN50_9STRA) HSP 1 Score: 319 bits (818), Expect = 2.190e-106 Identity = 147/258 (56.98%), Postives = 174/258 (67.44%), Query Frame = 1
Query: 70 GCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPST-----------DVDETDCFNV-TSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 807
GC N CNGHG C+ C CYEGWGAD+D++LY+A DCSARVCP+G AWGD+PT +AH ECSG GLCDRDSG C CF GF G AC+R CP++CS HGRC+++K + NALPLS+ G ++ TWDE+ IFGCVCDS W VGL A +TQ EWFGPDCSLRHCPSG+DP+ + +C V T V + G GNLCHVDCS RG CDYATG+C+CF GYYG NCG VLA
Sbjct: 38 GCDQHNNCNGHGVCSQQDAVCLCYEGWGADSDISLYKAQDCSARVCPSGPAWGDVPTAKYTAHAALECSGMGLCDRDSGVCRCFTGFEGDACQRMACPNNCSGHGRCMSLKNMVNEPNALPLSSNAHEYGGDELATTWDEDRIFGCVCDSSWAVGLKATETQAVEWFGPDCSLRHCPSGNDPAQLQLTPAHPAEKPILTINCEGVATPGVVEKDSEGAEGNLCHVDCSGRGVCDYATGVCQCFNGYYGQNCGTVDVLA 295
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPX8_PYTOL) HSP 1 Score: 312 bits (799), Expect = 2.120e-104 Identity = 137/238 (57.56%), Postives = 171/238 (71.85%), Query Frame = 1
Query: 91 CNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVL 804
CNGHG CNT T+TCTC+EG+GA TD+ +Y+A DCS RVCPAG +WG IPT AH ECS G+CDR SG+C+C+ G+ G+AC+RS C + CS HGRCV+M+ +A ++A PLS G ED T TWD+ IFGC+CDS W VGLG+GQ Q+ EWFGPDCSL CP+GDDP T VDETDC T++ + G+ GN CHVDC+NRG CDY +G C CF+G+YG NC S +
Sbjct: 5 CNGHGRCNTATKTCTCFEGYGAATDVAVYKAPDCSQRVCPAGPSWGGIPTDETVAHALAECSDMGVCDRSSGQCKCYRGYEGSACQRSTCLNGCSGHGRCVSMREMATITSAFPLSPAATYEGAED-TTTWDQNRIFGCLCDSSWAVGLGSGQRQQSEWFGPDCSLLRCPTGDDPLTAVDETDCNGKTATDST--SVGQPGNRCHVDCANRGICDYTSGTCMCFSGFYGSNCASLSPV 239
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ07_9STRA) HSP 1 Score: 310 bits (794), Expect = 5.090e-103 Identity = 138/243 (56.79%), Postives = 168/243 (69.14%), Query Frame = 1
Query: 91 CNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALP--LSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFN-VTSSSVYPG-TAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 807
CNGHGTCNT T C CY+GWG+ +D+T YRA DCS RVCP+G AW D T + +AH ECS G+CDR +G+C CF G+ G AC+RS CP++CS HG+CV++ +A +NA P + + G + TWDE+ IFGCVCDS W V L +G TQEPEWFG DCSLRHC SGDDP T DETDC V + G T G AGNLCHVDC+NRG C+Y TG+C+CF G+YG C QS LA
Sbjct: 36 CNGHGTCNTATTQCACYDGWGSSSDVTTYRAPDCSKRVCPSGNAWADAATATNTAHALAECSNAGICDRTTGKCRCFTGYDGEACQRSACPNECSGHGKCVSIAQMASENNAQPVDIESPAFTYGGSEAVATWDEDKIFGCVCDSSWTVSLASGATQEPEWFGADCSLRHCASGDDPMTTADETDCVGKVRNGQTVAGRTGGVAGNLCHVDCANRGICNYNTGICDCFDGFYGVACTLQSELA 278
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G2_9STRA) HSP 1 Score: 305 bits (782), Expect = 1.600e-101 Identity = 141/247 (57.09%), Postives = 169/247 (68.42%), Query Frame = 1
Query: 73 CSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDP-STDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 810
C N+CNGHG C T TC CYEGWGA TD+ LY+ DCS R CP+G AW D+ + S +AH ECSG+G C++ +G C+C GF+G AC+R GC DCS HG+CV+MK +A NALPLS G E T WD++ I+GCVCDS W VGLG GQ QEPEWFGP CSLRHCPSGDDP +T VDET+C VT++ Y G GNLC VDC+NRG CD TG C C+TG YG +C S LA+
Sbjct: 18 CIDMNFCNGHGHCEPATDTCDCYEGWGAKTDVALYKLHDCSGRTCPSGPAWADVASDSKTAHAPAECSGKGTCNKATGTCKCVSGFSGDACQRFGCLYDCSGHGQCVSMKKMATMPNALPLSKPATYTGLET-TERWDQDRIYGCVCDSSWPVGLGPGQRQEPEWFGPWCSLRHCPSGDDPYTTHVDETNCTGVTAAGGYG--VGEKGNLCQVDCANRGKCDTETGECSCWTGSYGHDCTLLSALAR 261
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: EGF-like (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZL0_9STRA) HSP 1 Score: 305 bits (782), Expect = 1.840e-101 Identity = 138/246 (56.10%), Postives = 167/246 (67.89%), Query Frame = 1
Query: 73 CSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAG--RAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVL 804
CS + CNGHG C T ++TC C+EG+GA +D+T Y++ DCS RVCP+G +W IPT + SAH ECS G CDR SG+C CF G+ GAAC+R CP+ CS HG+CV+M+A+A +NA PLS G E T TWD+ IFGCVCDS W+VGL AGQ Q +WFG DCSL CPSGDDP T VDETDC + PG G GN CH+DCSNRG CDY TG C CF+G+YG NC S +
Sbjct: 24 CSALSNCNGHGRCVTASKTCICFEGYGATSDITSYKSPDCSKRVCPSGPSWAGIPTAANSAHPRTECSDAGYCDRSSGQCRCFAGYDGAACQRYACPNGCSGHGQCVSMQAMAELTNAAPLSAATTYAGAEA-TTTWDQNRIFGCVCDSSWDVGLAAGQRQSSQWFGADCSLMRCPSGDDPMTTVDETDCGGK----LAPGGVGTGETGNKCHIDCSNRGKCDYTTGTCACFSGFYGSNCASLSPV 264
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D842_CAFRO) HSP 1 Score: 304 bits (779), Expect = 1.390e-100 Identity = 145/273 (53.11%), Postives = 173/273 (63.37%), Query Frame = 1
Query: 67 AGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDV-DETDCFNVTSSS---------------VYPGTA---------GRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLAK 810
+ C+ N CN HGTC+ R C C++G+G+++DL +Y+A DCS RVCPA KAW DIPTG+ +AH ECS G+CDR +G C CF GF G AC+RS CP+ CS HG+CV+M +A +NA P+ G E TVTWDE IFGCVCDS W VG GAGQTQ WFG DCS R CPSGDD ST++ DETDC T + PGT G GN CHVDCSNRG CD +GLC+CF GYYG NCG +S LAK
Sbjct: 20 SACAHLNNCNSHGTCDETNRVCRCFDGFGSESDLAVYKAPDCSQRVCPADKAWVDIPTGATTAHNNAECSNAGICDRGTGRCRCFAGFEGDACQRSSCPNGCSGHGKCVSMSQMAGEANAFPVGPATTYGGFES-TVTWDENKIFGCVCDSIWTVGFGAGQTQATSWFGADCSQRRCPSGDDASTELRDETDCSYYTDNGETWHGAVLSDGTPDRANPGTGVTGTLGVDFGAVGNKCHVDCSNRGICDRTSGLCKCFRGYYGQNCGLRSALAK 291
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: EGF-like (domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WEK2_PHYIN) HSP 1 Score: 302 bits (774), Expect = 4.220e-100 Identity = 141/267 (52.81%), Postives = 181/267 (67.79%), Query Frame = 1
Query: 28 LVSSWIFTTVQGNAG------CSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAG--NLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVL 804
+V+S I V+G G C+ N CN HG C+ T+TCTCYEG+GA TD+T YR+ DCS R CPAG +WG IP + ++H ++ECSG G+CDR++G C C+ G+ G+AC+RS CP+ CS HG+C++M+ LAV +A PLS G + TWD++ I GC+CDS W VGLGAG++Q ++FGPDCS HCPSGDDP T VDET C + V G AG G NLCHVDC+NRG CDY TG C CF+G+YG NC S L
Sbjct: 13 VVASAICPLVRGQLGVPTGNLCAALNNCNAHGRCDALTKTCTCYEGFGAPTDITNYRSPDCSMRTCPAGPSWGGIPNSATTSHPKEECSGAGVCDRNTGTCFCYYGYEGSACQRSSCPNSCSGHGQCMSMRELAVEPSAFPLSPPTKYEG-DVRATTWDQDRIQGCLCDSTWPVGLGAGESQLSQYFGPDCSKMHCPSGDDPMTAVDETKCVGI----VATGGAGTGGPDNLCHVDCANRGICDYNTGECSCFSGFYGSNCASLSPL 274
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: Aste57867_11942 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUX1_9STRA) HSP 1 Score: 300 bits (768), Expect = 3.440e-99 Identity = 141/266 (53.01%), Postives = 183/266 (68.80%), Query Frame = 1
Query: 7 LAKFFLVLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDS-KWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSV 801
L LVL ++ + V G+ C+ CNGHG CNT T+ CTC GWG+ TD+++ + ADCS+RVCP+G +W IPT S +AH ECS GLC+ +GEC+CF GF GAACER+ CP+DCS HG CV+M+ +A+ SNA+PLS +G T TWD++ +FGCVCD+ W VGL +GQ Q ++FG DCSL HCPSG+DP T DE DC NV + + GT G +GN+C V+CSNRG CD+ TGLC CF G+YG NCG S+
Sbjct: 13 LVSLLLVLPAARGYNPVGGDL-CNSLGDCNGHGFCNTATKVCTCQNGWGSATDISINKLADCSSRVCPSGPSWSSIPTASDTAHTVTECSDSGLCNTATGECKCFPGFGGAACERATCPNDCSGHGICVSMRNMAMMSNAMPLSPPTTYQGFAL-TTTWDQDRLFGCVCDAPSWTVGLASGQVQAAQYFGADCSLMHCPSGNDPMTTADELDCSNVAAPGGF-GT-GASGNICFVECSNRGVCDFTTGLCTCFDGFYGANCGTMSI 274
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Match: EGF-like (domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7I9_9STRA) HSP 1 Score: 299 bits (766), Expect = 6.040e-99 Identity = 135/247 (54.66%), Postives = 173/247 (70.04%), Query Frame = 1
Query: 73 CSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCS--ARVCPAGKAWGDIPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSNALPLSNVCVLRG*EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYPGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 807
C+ N CN HG C+ T+TCTCYEG+GA TD+T YR+ DCS R CPAG +WG IPT + ++H + ECSG G+CDR SG C C+ G+ G+AC+RS CP+ CS HG+C++M+ +A+ S+A PLS G + TWD++ I GC+CDS W VGLGAG++Q ++FGPDCS HCPSGDDP T VDETDC + ++ G G A NLCHVDC+NRG CDY+ G C CF G+YG NC S LA
Sbjct: 28 CASLNNCNAHGRCDALTKTCTCYEGFGAPTDVTNYRSPDCSLRTRTCPAGPSWGGIPTSATTSHPKAECSGAGICDRSSGTCICYYGYEGSACQRSSCPNSCSGHGQCLSMREMAMESSAFPLSPPTKYEG-DVTATTWDQDRIQGCLCDSSWPVGLGAGESQLAQYFGPDCSRMHCPSGDDPMTAVDETDCEGIIAAGG--GGTGAADNLCHVDCANRGICDYSRGECSCFPGFYGSNCASLSPLA 271 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig115.1273.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig115.1273.1 >prot_Ecto-sp9_F_contig115.1273.1 ID=prot_Ecto-sp9_F_contig115.1273.1|Name=mRNA_Ecto-sp9_F_contig115.1273.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=154bp MTLAKFFLVLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWback to top mRNA from alignment at Ecto-sp9_F_contig115:50628..53020+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig115.1273.1 ID=mRNA_Ecto-sp9_F_contig115.1273.1|Name=mRNA_Ecto-sp9_F_contig115.1273.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2393bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:50628..53020+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig115:50628..53020+ >mRNA_Ecto-sp9_F_contig115.1273.1 ID=mRNA_Ecto-sp9_F_contig115.1273.1|Name=mRNA_Ecto-sp9_F_contig115.1273.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:50628..53020+ (Ectocarpus species9 EcSCA_722f female)back to top |