mRNA_Ecto-sp9_F_contig115.1268.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig115.1268.1
Unique NamemRNA_Ecto-sp9_F_contig115.1268.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig115.1268.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig115contigEcto-sp9_F_contig115:15412..16840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size275
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig115.1268.1prot_Ecto-sp9_F_contig115.1268.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig115 15412..16840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928402.9893773-CDS-Ecto-sp9_F_contig115:15411..155251622928402.9893773-CDS-Ecto-sp9_F_contig115:15411..15525Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 15412..15525 +
1692277859.3562858-CDS-Ecto-sp9_F_contig115:15411..155251692277859.3562858-CDS-Ecto-sp9_F_contig115:15411..15525Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 15412..15525 +
1622928403.0016236-CDS-Ecto-sp9_F_contig115:16356..164211622928403.0016236-CDS-Ecto-sp9_F_contig115:16356..16421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 16357..16421 +
1692277859.3660152-CDS-Ecto-sp9_F_contig115:16356..164211692277859.3660152-CDS-Ecto-sp9_F_contig115:16356..16421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 16357..16421 +
1622928403.0141447-CDS-Ecto-sp9_F_contig115:16746..168401622928403.0141447-CDS-Ecto-sp9_F_contig115:16746..16840Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 16747..16840 +
1692277859.380179-CDS-Ecto-sp9_F_contig115:16746..168401692277859.380179-CDS-Ecto-sp9_F_contig115:16746..16840Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 16747..16840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig115.1268.1

>prot_Ecto-sp9_F_contig115.1268.1 ID=prot_Ecto-sp9_F_contig115.1268.1|Name=mRNA_Ecto-sp9_F_contig115.1268.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp
PLEATPTTEAIENVLRDFLRASGFDPSSIMFRQLSEKEVDAPDGAWRNLL
RVKDQDGVLVPLRTPKYTRSFFGLFWRIHGAMTMVFAMTTQ
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mRNA from alignment at Ecto-sp9_F_contig115:15412..16840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig115.1268.1 ID=mRNA_Ecto-sp9_F_contig115.1268.1|Name=mRNA_Ecto-sp9_F_contig115.1268.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1429bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:15412..16840+ (Ectocarpus species9 EcSCA_722f female)
CCACTGGAAGCAACACCGACGACCGAAGCGATAGAAAACGTGCTCCGCGA
CTTTCTGCGGGCTTCGGGTTTTGATCCATCCTCGATAATGTTCCGACAAC
TATCGGAAAAAGAGGTAGGCAAATACTGTTGTCGCAACCGCGCAGTCGGC
GAAACTCTCCATATAATTAAGAAATGGCATTGCACCGTCCGTTGGTGGTC
GCCCGATGATTCTCGAAGTTGAGTTCTCGTGTTTGGCTCCGTCCGCGCAC
GTGATCAAGTTATGATATTGTTCATGCGGAGGGGGTTGCCAATATTGCAT
GCACACTTCTAAGTACGGCGTGACTCTACGGATGATGCTTCTGAGAAACG
CCCTAACATGAACATCAAACGGCGACGCCGCCTATCTGAAACGAGCCATG
TGGAGATGCCCAACTAATTTGAAGTCCTCACAGAGGATGTTCTGTAAACA
TTACCTCCAGTTCACGATACGTGTTTTGTTTATTACAGAGTCATCTGGTA
TCAATGATAATCAGTGTGCAGGCTTACTAAGAACATTCACTGGGTGTGCG
CACAAGATATTGTAGCCTCACGTGCAGAGTATTGTAGTGACTAGGACGCT
AACTCATGCCCCGCCCAGGCCGATAACTCATGCAATTACATCAGCTACAA
AAGGGAGGCGGTCGTAAAAAAAACAACTCAATAGAAGCCAATGCCTTGCA
AAATTCCCTCCCCCACTCACTGCAAAGACTTTGAGCACATCCGGTAAAAC
CTCGAACAGTGTTTCAGGTGATTGTATGTGTACTTTCTAAACCCGTGCAA
GACCAACCGAAAGCGATCCAGGGAGAATCGGACCACTACCCGAAGGATGG
TAACACCGTGTTGGTATTTTGGCCCTTCGTCCAACCCCGGATGGCCGCTT
TGCAACAACGCCGGTCACACGGCTCTTTCGATCCAAATTCCACAGGTTGA
TGCACCAGACGGAGCATGGCGAAACCTGTTAAGGGTCAAGGACCAAGACG
GGGTGCTCGTGTAAGTCAGACGCGATTTGAGCATCACGACCTGTTGCTAG
TGTCGGTATGCGGGCGTAAGACTCAGCGTTGGTCCTTCATCCAGCTGTTA
TTCGTCAAACAAACGTCCTCGCTACAGCTTAGTAAATGTGCCATGCCCTT
GCCAGTGTGACGGTAGTGAAACAGATGCCAAAACACCGTCTGGTCTTACT
CAAAATGCTTGTGCACTCTGGACGATACTGTCGAATATTACTTTGACTTG
ACAAGAGGAGTGACGGTGCCCCACGAATGTCTATTGTAGTATCCCCCCTC
AACGCTCCTCTTGTCTGTAATTCTCACCTTTTCAGGCCACTTCGCACGCC
CAAGTACACTCGATCCTTCTTCGGGCTTTTTTGGCGCATCCATGGAGCCA
TGACCATGGTCTTCGCCATGACAACCCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig115:15412..16840+

>mRNA_Ecto-sp9_F_contig115.1268.1 ID=mRNA_Ecto-sp9_F_contig115.1268.1|Name=mRNA_Ecto-sp9_F_contig115.1268.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:15412..16840+ (Ectocarpus species9 EcSCA_722f female)
CCACTGGAAGCAACACCGACGACCGAAGCGATAGAAAACGTGCTCCGCGA
CTTTCTGCGGGCTTCGGGTTTTGATCCATCCTCGATAATGTTCCGACAAC
TATCGGAAAAAGAGCCACTGGAAGCAACACCGACGACCGAAGCGATAGAA
AACGTGCTCCGCGACTTTCTGCGGGCTTCGGGTTTTGATCCATCCTCGAT
AATGTTCCGACAACTATCGGAAAAAGAGGTTGATGCACCAGACGGAGCAT
GGCGAAACCTGTTAAGGGTCAAGGACCAAGACGGGGTGCTCGTGTTGATG
CACCAGACGGAGCATGGCGAAACCTGTTAAGGGTCAAGGACCAAGACGGG
GTGCTCGTGCCACTTCGCACGCCCAAGTACACTCGATCCTTCTTCGGGCT
TTTTTGGCGCATCCATGGAGCCATGACCATGGTCTTCGCCATGACAACCC
AGGCCACTTCGCACGCCCAAGTACACTCGATCCTTCTTCGGGCTTTTTTG
GCGCATCCATGGAGCCATGACCATGGTCTTCGCCATGACAACCCAG
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