mRNA_Ecto-sp9_F_contig11472.1257.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11472.1257.1
Unique NamemRNA_Ecto-sp9_F_contig11472.1257.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11472.1257.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11472contigEcto-sp9_F_contig11472:2382..2793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size413
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928399.9956007-CDS-Ecto-sp9_F_contig11472:2381..27921622928399.9956007-CDS-Ecto-sp9_F_contig11472:2381..2792Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11472 2382..2792 +
1692277858.727663-CDS-Ecto-sp9_F_contig11472:2381..27921692277858.727663-CDS-Ecto-sp9_F_contig11472:2381..2792Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11472 2382..2792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11472.1257.1prot_Ecto-sp9_F_contig11472.1257.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11472 2382..2792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11472.1257.1

>prot_Ecto-sp9_F_contig11472.1257.1 ID=prot_Ecto-sp9_F_contig11472.1257.1|Name=mRNA_Ecto-sp9_F_contig11472.1257.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=137bp
PVPRALRRSDVARILEEFLHGERGGGTLAWTSQPMPRQLGGRCSHGGPSR
GYDGGSKVPTTGPKNKVLHSLLPTCVTTEAEQSPATRKRDNEGEAAGVHL
PLQGKTTPPKPTPKELRNSPGKRHSVCMKKLVNLPAQ
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mRNA from alignment at Ecto-sp9_F_contig11472:2382..2793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11472.1257.1 ID=mRNA_Ecto-sp9_F_contig11472.1257.1|Name=mRNA_Ecto-sp9_F_contig11472.1257.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=412bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11472:2382..2793+ (Ectocarpus species9 EcSCA_722f female)
CCGGTGCCTCGCGCCCTCAGGAGGAGTGACGTTGCCAGGATACTGGAAGA
GTTCTTGCACGGGGAACGAGGGGGAGGAACTCTTGCATGGACTAGCCAGC
CTATGCCTCGACAACTCGGAGGACGTTGCAGCCATGGAGGCCCCTCACGA
GGTTACGACGGTGGTAGCAAAGTCCCCACTACCGGCCCGAAAAACAAAGT
ACTACACAGCCTCCTACCAACATGCGTCACCACCGAGGCGGAACAAAGTC
CAGCAACGCGAAAAAGAGACAACGAGGGTGAGGCCGCCGGGGTGCATCTC
CCACTCCAGGGAAAAACAACACCCCCGAAGCCGACACCGAAAGAACTCCG
AAACTCGCCGGGCAAGCGACACTCCGTCTGTATGAAGAAGCTAGTAAACC
TCCCTGCCCAAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11472:2382..2793+

>mRNA_Ecto-sp9_F_contig11472.1257.1 ID=mRNA_Ecto-sp9_F_contig11472.1257.1|Name=mRNA_Ecto-sp9_F_contig11472.1257.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11472:2382..2793+ (Ectocarpus species9 EcSCA_722f female)
CCGGTGCCTCGCGCCCTCAGGAGGAGTGACGTTGCCAGGATACTGGAAGA
GTTCTTGCACGGGGAACGAGGGGGAGGAACTCTTGCATGGACTAGCCAGC
CTATGCCTCGACAACTCGGAGGACGTTGCAGCCATGGAGGCCCCTCACGA
GGTTACGACGGTGGTAGCAAAGTCCCCACTACCGGCCCGAAAAACAAAGT
ACTACACAGCCTCCTACCAACATGCGTCACCACCGAGGCGGAACAAAGTC
CAGCAACGCGAAAAAGAGACAACGAGGGTGAGGCCGCCGGGGTGCATCTC
CCACTCCAGGGAAAAACAACACCCCCGAAGCCGACACCGAAAGAACTCCG
AAACTCGCCGGGCAAGCGACACTCCGTCTGTATGAAGAAGCTAGTAAACC
TCCCTGCCCAACCGGTGCCTCGCGCCCTCAGGAGGAGTGACGTTGCCAGG
ATACTGGAAGAGTTCTTGCACGGGGAACGAGGGGGAGGAACTCTTGCATG
GACTAGCCAGCCTATGCCTCGACAACTCGGAGGACGTTGCAGCCATGGAG
GCCCCTCACGAGGTTACGACGGTGGTAGCAAAGTCCCCACTACCGGCCCG
AAAAACAAAGTACTACACAGCCTCCTACCAACATGCGTCACCACCGAGGC
GGAACAAAGTCCAGCAACGCGAAAAAGAGACAACGAGGGTGAGGCCGCCG
GGGTGCATCTCCCACTCCAGGGAAAAACAACACCCCCGAAGCCGACACCG
AAAGAACTCCGAAACTCGCCGGGCAAGCGACACTCCGTCTGTATGAAGAA
GCTAGTAAACCTCCCTGCCCAA
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