mRNA_Ecto-sp9_F_contig11468.1254.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11468.1254.1
Unique NamemRNA_Ecto-sp9_F_contig11468.1254.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER6_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 5.780e-42
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE
Sbjct:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 67
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BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=2 Tax=PX clade TaxID=569578 RepID=A0A6H5KDJ3_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.340e-38
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVG +
Sbjct:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNK 67
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BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Translation (initiation factor 6 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUG4_9ARCH)

HSP 1 Score: 121 bits (303), Expect = 1.230e-32
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            MA RAQFENSNEIGVFS LTNSYAL +IGGSENFYSVFE ELADHIPVVHTSIAGCRFVGRV VG +
Sbjct:    1 MAIRAQFENSNEIGVFSNLTNSYALVAIGGSENFYSVFEQELADHIPVVHTSIAGCRFVGRVTVGNK 67
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BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Eukaryotic (translation initiation factor 6 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5M3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.690e-32
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            MA R QFENSNEIGVFSKLTN+YAL  +GGSENFYSVFESELADHIPV+H SIAGCRFVGRV VG +
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNAYALVCVGGSENFYSVFESELADHIPVIHCSIAGCRFVGRVSVGNK 67
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BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=27 Tax=Oomycota TaxID=4762 RepID=H3G8Q6_PHYRM)

HSP 1 Score: 117 bits (294), Expect = 2.750e-31
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            MATR QFENSNEIGVFSKLTNSY L  +GGSENFYS FESELA+HIPVVH S+AGCRFVGRV VG +
Sbjct:    1 MATRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELAEHIPVVHASVAGCRFVGRVAVGNK 67
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BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Hypothetical (protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NKR6_GUITH)

HSP 1 Score: 113 bits (282), Expect = 4.470e-31
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    7 TRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            TR QFEN+NE+GVF++LTNSY L  IGGSENFYSVFESELADH+PV+H SIAGCR +GR+CVG  
Sbjct:    1 TRVQFENNNEVGVFARLTNSYCLVGIGGSENFYSVFESELADHVPVIHASIAGCRIIGRLCVGNS 65
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BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8K6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.750e-31
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            MATR QFENSNEIGVFS+LTNSY L ++GGSENFYS+FE ELADHIPV+H S+AGCRFVGRV +G +
Sbjct:    1 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFVGRVTIGNK 67
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BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=2 Tax=Cryptophyceae TaxID=3027 RepID=L1K0B2_GUITC)

HSP 1 Score: 116 bits (291), Expect = 7.940e-31
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            MATR QFEN+NE+GVF++LTNSY L  IGGSENFYSVFESELADH+PV+H SIAGCR +GR+CVG  
Sbjct:    1 MATRVQFENNNEVGVFARLTNSYCLVGIGGSENFYSVFESELADHVPVIHASIAGCRIIGRLCVGNS 67
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: eukaryotic (translation initiation factor 6 n=1 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CED8CB)

HSP 1 Score: 115 bits (287), Expect = 3.090e-30
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            MA R QFEN+NEIGVFSKLTNSY L +IGGSENFYSVFE ELAD +PV+HTSIAGCR +GR+CVG +
Sbjct:    1 MAVRVQFENNNEIGVFSKLTNSYCLVAIGGSENFYSVFEGELADSVPVIHTSIAGCRIIGRLCVGNK 67
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KHN4_GUITH)

HSP 1 Score: 113 bits (282), Expect = 4.830e-30
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    7 TRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGEE 201
            TR QFEN+NE+GVF++LTNSY L  IGGSENFYSVFESELADH+PV+H SIAGCR +GR+CVG  
Sbjct:    1 TRVQFENNNEVGVFARLTNSYCLVGIGGSENFYSVFESELADHVPVIHASIAGCRIIGRLCVGNS 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11468.1254.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.780e-42100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Eukaryotic2.340e-3897.01translation initiation factor 6 n=2 Tax=PX clade T... [more]
Translation1.230e-3288.06initiation factor 6 n=1 Tax=archaeon TaxID=1906665... [more]
Eukaryotic1.690e-3283.58translation initiation factor 6 (Fragment) n=1 Tax... [more]
Eukaryotic2.750e-3182.09translation initiation factor 6 n=27 Tax=Oomycota ... [more]
Hypothetical4.470e-3175.38protein n=1 Tax=Guillardia theta TaxID=55529 RepID... [more]
Eukaryotic7.750e-3177.61translation initiation factor 6 n=1 Tax=Nannochlor... [more]
Eukaryotic7.940e-3176.12translation initiation factor 6 n=2 Tax=Cryptophyc... [more]
eukaryotic3.090e-3077.61translation initiation factor 6 n=1 Tax=Ceratosole... [more]
Eukaryotic4.830e-3075.38translation initiation factor 6 n=1 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11468contigEcto-sp9_F_contig11468:3044..3244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue1.6e-31
Seed eggNOG ortholog2880.D8LER6
Preferred nameEIF6
KEGG koko:K03264,ko:K03440
KEGG TC1.A.6.1.4,1.A.6.2,1.A.6.4,1.A.6.5
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000054,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001101,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005638,GO:0005652,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0005882,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010154,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016441,GO:0016458,GO:0017148,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0030808,GO:0030811,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032868,GO:0032870,GO:0032991,GO:0033036,GO:0033750,GO:0033993,GO:0034248,GO:0034249,GO:0034250,GO:0034399,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035194,GO:0035195,GO:0035278,GO:0040029,GO:0040033,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0042304,GO:0042325,GO:0042886,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043467,GO:0043470,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045111,GO:0045184,GO:0045595,GO:0045637,GO:0045652,GO:0045727,GO:0045974,GO:0046483,GO:0046890,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0061458,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0071166,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097306,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1900371,GO:1900542,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1902626,GO:1903578,GO:1903706,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000377,GO:2001169
EggNOG free text desc.mature ribosome assembly
EggNOG OGsCOG1976@1,KOG3185@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03012,ko04040
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTranslation initiation factor IF6
Ec32 orthologEc-26_000870.1
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928397.8819401-CDS-Ecto-sp9_F_contig11468:3043..32441622928397.8819401-CDS-Ecto-sp9_F_contig11468:3043..3244Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11468 3044..3244 +
1692277858.3528132-CDS-Ecto-sp9_F_contig11468:3043..32441692277858.3528132-CDS-Ecto-sp9_F_contig11468:3043..3244Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11468 3044..3244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11468.1254.1prot_Ecto-sp9_F_contig11468.1254.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11468 3044..3244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11468.1254.1

>prot_Ecto-sp9_F_contig11468.1254.1 ID=prot_Ecto-sp9_F_contig11468.1254.1|Name=mRNA_Ecto-sp9_F_contig11468.1254.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=67bp
MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVH
TSIAGCRFVGRVCVGEE
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mRNA from alignment at Ecto-sp9_F_contig11468:3044..3244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11468.1254.1 ID=mRNA_Ecto-sp9_F_contig11468.1254.1|Name=mRNA_Ecto-sp9_F_contig11468.1254.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11468:3044..3244+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGACCCGCGCTCAGTTCGAGAACTCCAACGAGATCGGCGTGTTCTC
CAAGCTCACCAACAGCTACGCGCTCTGCTCCATCGGCGGCAGCGAGAACT
TCTACAGCGTCTTCGAGTCGGAGCTGGCGGATCATATTCCGGTGGTTCAC
ACCAGCATAGCGGGGTGTCGCTTTGTGGGGCGGGTGTGCGTAGGTGAGGA
G
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11468:3044..3244+

>mRNA_Ecto-sp9_F_contig11468.1254.1 ID=mRNA_Ecto-sp9_F_contig11468.1254.1|Name=mRNA_Ecto-sp9_F_contig11468.1254.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11468:3044..3244+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGACCCGCGCTCAGTTCGAGAACTCCAACGAGATCGGCGTGTTCTC
CAAGCTCACCAACAGCTACGCGCTCTGCTCCATCGGCGGCAGCGAGAACT
TCTACAGCGTCTTCGAGTCGGAGCTGGCGGATCATATTCCGGTGGTTCAC
ACCAGCATAGCGGGGTGTCGCTTTGTGGGGCGGGTGTGCGTAGGTGAGGA
GATGGCGACCCGCGCTCAGTTCGAGAACTCCAACGAGATCGGCGTGTTCT
CCAAGCTCACCAACAGCTACGCGCTCTGCTCCATCGGCGGCAGCGAGAAC
TTCTACAGCGTCTTCGAGTCGGAGCTGGCGGATCATATTCCGGTGGTTCA
CACCAGCATAGCGGGGTGTCGCTTTGTGGGGCGGGTGTGCGTAGGTGAGG
AG
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