mRNA_Ecto-sp9_F_contig1146.1250.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1146.1250.1
Unique NamemRNA_Ecto-sp9_F_contig1146.1250.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1146.1250.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1146contigEcto-sp9_F_contig1146:24048..24725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_002670.1
Exons1
Model size678
Cds size678
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928397.6401308-CDS-Ecto-sp9_F_contig1146:24047..247251622928397.6401308-CDS-Ecto-sp9_F_contig1146:24047..24725Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1146 24048..24725 -
1692277858.2396595-CDS-Ecto-sp9_F_contig1146:24047..247251692277858.2396595-CDS-Ecto-sp9_F_contig1146:24047..24725Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1146 24048..24725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1146.1250.1prot_Ecto-sp9_F_contig1146.1250.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1146 24048..24725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1146.1250.1

>prot_Ecto-sp9_F_contig1146.1250.1 ID=prot_Ecto-sp9_F_contig1146.1250.1|Name=mRNA_Ecto-sp9_F_contig1146.1250.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=226bp
MNMSQPNLGTRRKGRSHGMAGNETRPGVRLTTRTVGQAAALLLVEKPRAI
VPRSVLFQWYGIEISKGCREYAIVRRGAGATAKAGAGVGTGDGKEVGEGL
IGAEVGVESGERRRGDESANARGRECGRERQKEHGKGKERQIKSDIGGTG
GRAVPTHRAGVDMRTERRLTPNRLERFRCRSLRQSTRKPQSNDNFGKLRF
KTQHLKPERNLPSEGLQAGSDQRCP*
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mRNA from alignment at Ecto-sp9_F_contig1146:24048..24725-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1146.1250.1 ID=mRNA_Ecto-sp9_F_contig1146.1250.1|Name=mRNA_Ecto-sp9_F_contig1146.1250.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=678bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1146:24048..24725- (Ectocarpus species9 EcSCA_722f female)
ATGAATATGTCGCAACCGAACCTAGGGACACGACGGAAGGGCCGTTCGCA
TGGGATGGCGGGCAACGAGACAAGGCCAGGGGTGCGGCTTACAACAAGGA
CAGTGGGACAAGCAGCGGCGTTGCTCCTCGTCGAGAAGCCGAGAGCGATC
GTCCCGCGGAGCGTGCTTTTCCAATGGTACGGGATCGAGATATCGAAAGG
CTGCAGGGAGTACGCCATCGTCAGAAGAGGAGCAGGAGCCACAGCAAAAG
CCGGAGCAGGAGTAGGGACCGGGGACGGGAAAGAGGTGGGCGAAGGACTC
ATCGGAGCAGAAGTAGGAGTCGAGAGCGGCGAGAGGCGGAGAGGGGACGA
GAGCGCGAACGCGAGAGGGAGAGAATGCGGCAGAGAGAGGCAGAAAGAGC
ACGGCAAAGGCAAAGAGAGGCAGATAAAGAGCGATATCGGAGGAACAGGA
GGTCGCGCAGTCCCGACACATCGAGCAGGTGTAGACATGCGGACAGAGAG
AAGACTCACCCCAAACAGGCTGGAAAGGTTCCGGTGTCGCTCCCTACGGC
AGAGCACGCGAAAGCCGCAGTCAAACGACAACTTCGGAAAGCTGCGGTTC
AAGACGCAACACTTAAAACCGGAGCGAAATCTACCGTCGGAGGGGCTGCA
GGCTGGGAGCGACCAGAGATGTCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1146:24048..24725-

>mRNA_Ecto-sp9_F_contig1146.1250.1 ID=mRNA_Ecto-sp9_F_contig1146.1250.1|Name=mRNA_Ecto-sp9_F_contig1146.1250.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1356bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1146:24048..24725- (Ectocarpus species9 EcSCA_722f female)
ATGAATATGTCGCAACCGAACCTAGGGACACGACGGAAGGGCCGTTCGCA
TGGGATGGCGGGCAACGAGACAAGGCCAGGGGTGCGGCTTACAACAAGGA
CAGTGGGACAAGCAGCGGCGTTGCTCCTCGTCGAGAAGCCGAGAGCGATC
GTCCCGCGGAGCGTGCTTTTCCAATGGTACGGGATCGAGATATCGAAAGG
CTGCAGGGAGTACGCCATCGTCAGAAGAGGAGCAGGAGCCACAGCAAAAG
CCGGAGCAGGAGTAGGGACCGGGGACGGGAAAGAGGTGGGCGAAGGACTC
ATCGGAGCAGAAGTAGGAGTCGAGAGCGGCGAGAGGCGGAGAGGGGACGA
GAGCGCGAACGCGAGAGGGAGAGAATGCGGCAGAGAGAGGCAGAAAGAGC
ACGGCAAAGGCAAAGAGAGGCAGATAAAGAGCGATATCGGAGGAACAGGA
GGTCGCGCAGTCCCGACACATCGAGCAGGTGTAGACATGCGGACAGAGAG
AAGACTCACCCCAAACAGGCTGGAAAGGTTCCGGTGTCGCTCCCTACGGC
AGAGCACGCGAAAGCCGCAGTCAAACGACAACTTCGGAAAGCTGCGGTTC
AAGACGCAACACTTAAAACCGGAGCGAAATCTACCGTCGGAGGGGCTGCA
GGCTGGGAGCGACCAGAGATGTCCTTGAATGAATATGTCGCAACCGAACC
TAGGGACACGACGGAAGGGCCGTTCGCATGGGATGGCGGGCAACGAGACA
AGGCCAGGGGTGCGGCTTACAACAAGGACAGTGGGACAAGCAGCGGCGTT
GCTCCTCGTCGAGAAGCCGAGAGCGATCGTCCCGCGGAGCGTGCTTTTCC
AATGGTACGGGATCGAGATATCGAAAGGCTGCAGGGAGTACGCCATCGTC
AGAAGAGGAGCAGGAGCCACAGCAAAAGCCGGAGCAGGAGTAGGGACCGG
GGACGGGAAAGAGGTGGGCGAAGGACTCATCGGAGCAGAAGTAGGAGTCG
AGAGCGGCGAGAGGCGGAGAGGGGACGAGAGCGCGAACGCGAGAGGGAGA
GAATGCGGCAGAGAGAGGCAGAAAGAGCACGGCAAAGGCAAAGAGAGGCA
GATAAAGAGCGATATCGGAGGAACAGGAGGTCGCGCAGTCCCGACACATC
GAGCAGGTGTAGACATGCGGACAGAGAGAAGACTCACCCCAAACAGGCTG
GAAAGGTTCCGGTGTCGCTCCCTACGGCAGAGCACGCGAAAGCCGCAGTC
AAACGACAACTTCGGAAAGCTGCGGTTCAAGACGCAACACTTAAAACCGG
AGCGAAATCTACCGTCGGAGGGGCTGCAGGCTGGGAGCGACCAGAGATGT
CCTTGA
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