mRNA_Ecto-sp9_F_contig1144.1233.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE) HSP 1 Score: 612 bits (1579), Expect = 2.500e-221 Identity = 304/312 (97.44%), Postives = 307/312 (98.40%), Query Frame = 1
Query: 1 MPSFWQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 936
MPS WQELAGGT GGVIGMTVVYPLDTIKSRLQTSGRSRYSSI+NVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATD+LTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDY LPPDRTSTAVPEP+LLALAGGLAGCVMWLPP YCLDVIKTRMQTAEPGVYRGVRDCLMKTLR EGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE
Sbjct: 1 MPSLWQELAGGTAGGVIGMTVVYPLDTIKSRLQTSGRSRYSSISNVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYLLPPDRTSTAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 312
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Carnitine/acylcarnitine (carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI) HSP 1 Score: 457 bits (1175), Expect = 5.800e-161 Identity = 224/226 (99.12%), Postives = 225/226 (99.56%), Query Frame = 1
Query: 259 FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 936
FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREG+AMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLR EGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE
Sbjct: 12 FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 237
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Carnitine/acylcarnitine (carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI) HSP 1 Score: 309 bits (792), Expect = 2.220e-102 Identity = 167/261 (63.98%), Postives = 188/261 (72.03%), Query Frame = 1
Query: 148 MARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKA----TDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTA----VPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSV 906
MA EG +S YRGLLSPV GYGAMFAVSFSSYG A RFL R + ++ L EK AG +AG MN+P R VF+RVK VMQVR G +PYSWSGAC DLVRREGV GL RG+ +TMLRE LQ IYYPSYE+ KD R ST+ VPEP L LAGG+AGC WLPP+YCLDVIKTR+Q+AEPGVY G DCL KT+R EG PVLFRGLG +MLRAFPMHGLVF+GYETTI LL R +C PT+V
Sbjct: 1 MAAHEGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLLA---RRSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLTTR--ENC-PTAV 255
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Carnitine/acylcarnitine (carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA) HSP 1 Score: 261 bits (666), Expect = 1.970e-83 Identity = 129/229 (56.33%), Postives = 163/229 (71.18%), Query Frame = 1
Query: 172 SLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 858
SLYRGL SPV+GYG +FA+SFS+ G A R+L R A ++ E +AGAWAG + AP RQVFERVKGVMQVR G ++PYSWSGAC+VDLVR EGV MGL RGMG+ +RE QF +YYP+Y++AK LP D + PI + LAGG+AG V WLPPIY +DV+KT++QTA PG Y+ + D KT+ EG LFRGLG +++RAFP+H +F GYE T+
Sbjct: 20 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHIS----PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTM 244
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Mitochondrial (carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA) HSP 1 Score: 235 bits (600), Expect = 3.770e-73 Identity = 127/261 (48.66%), Postives = 165/261 (63.22%), Query Frame = 1
Query: 148 MARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEI------------------AKDYFLPPDRTSTAVP-EPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 867
M R+ G SLYRGLLSP G+G FA+SF+ YG RF R+ +LTL E +GAWAG++ +P RQ+FER+K VMQVR+ G + PY WSG C+V LVR+EG+ GL RG+ AT LRE QF +YYP YE+ + + + S++ P P LL LAGG+AG V WLPP YCLDV+K+RMQ+A PGVY V DC K+ + EG+ V FRGL A++RAFP++ +FLGYETT+ L
Sbjct: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Mitochondrial (carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC) HSP 1 Score: 233 bits (594), Expect = 5.000e-72 Identity = 134/289 (46.37%), Postives = 176/289 (60.90%), Query Frame = 1
Query: 10 FWQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACVVDL-VRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 867
F EL GTVGGV+G+T+++PLDT K RLQ Y +V+ SM R+ G SLYRGLLSP G+G FA+SF+ YG RF R+ +LTL E +GAWAG++ +P RQ+FER+K VMQVR+ G + PY WSG C+ ++ VR M G++ + PS +ST +P P LL LAGG+AG V WLPP YCLDV+K+RMQ+A PGVY V DC K+ + EG+ V FRGL A++RAFP++ +FLGYETT+ L
Sbjct: 7 FVHELLAGTVGGVVGITLIFPLDTAKVRLQAYPH--YKGPIDVIRSMVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVRALQKMMAASNASGSSSNESNIVHR--KPS-------------SSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 274
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Solute (carrier family 25 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZ19_CAPO3) HSP 1 Score: 198 bits (504), Expect = 2.510e-57 Identity = 123/307 (40.07%), Postives = 172/307 (56.03%), Query Frame = 1
Query: 16 QELAGGTVGGVIGMTVVYPLDTIKSRLQTS--GRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATD-----------KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGV-------------YRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 858
Q L GGTVGG++G+ YP DT+K R+QT G + Y+ + + + + EG L+LY G+LSPVVG + AV F SYG ++LL R++ KL+ E +A AG++ + ERVK MQ GK +S CV+ LVR G++ GL +G T+LRE +G Y+ SY++AK F P + + + P LLALAGG+AG + W+P IY +DVIK+R+Q A+P Y GV DC +++ R EG+ V FRGL + RAFP H VFLGYE T+
Sbjct: 78 QHLLGGTVGGIMGIVASYPFDTVKVRIQTQPPGSALYTGMVDCFRKIIKSEGALALYSGMLSPVVGVAGVKAVVFGSYGGISQWLLARKQGVVAGSEQPQQQQQPVKLSGFENALASCSAGLVATIVVTPVERVKVSMQASGGKAFKSTLD----CVLSLVRTAGISGGLFKGFVPTVLREVPSYGAYFISYDMAKRAFCQPGQDVSTL-SPGLLALAGGIAGVMAWVP-IYPIDVIKSRIQ-AQPSSALVAASSGSSSRPYSGVVDCAVRSYRAEGLGVFFRGLTPTIARAFPCHAAVFLGYELTL 377
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA) HSP 1 Score: 194 bits (492), Expect = 5.680e-56 Identity = 119/291 (40.89%), Postives = 167/291 (57.39%), Query Frame = 1
Query: 13 WQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATD----KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGA 873
W+ G GV G+TVVYPLDT K RLQT Y + L ++ ++EG +LYRG+ +P+ GYGA+ ++ S+YG +LRRR A+A +L++ E AGA AGV++ +R ERVK VMQVR+ + S C+V +R EG+ G AT+LRE Q Y+P++EI K P +S + LL +AGG+AG WLPP+YC+DV+K+RM+ G GV L ++ EG VL RG+G AM+RAFPMH + TT +L+ A
Sbjct: 50 WKRGVSGLTAGVSGLTVVYPLDTTKLRLQTCP-GEYKGAFDCLRTVVKREGFAALYRGMSAPIAGYGAINSLLLSTYGMTA-VVLRRRNAEAAGGVDRELSMEESMAAGAVAGVVSTVLRAPVERVKAVMQVRRNPDGTKVFRNSWRCLVGTMRTEGLLSPFAAGR-ATLLRELFQGVAYFPAFEITKRALTPAGGSSNDLDFWRLL-IAGGVAGITQWLPPMYCIDVVKSRMEVPPAGSTPGVLGVLRASVAKEGGMVLLRGMGPAMVRAFPMHATIL----TTNELMTA 332
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Mitochondrial (substrate/solute carrier n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PA99_OSTTA) HSP 1 Score: 173 bits (438), Expect = 3.010e-48 Identity = 116/308 (37.66%), Postives = 165/308 (53.57%), Query Frame = 1
Query: 1 MPSFWQELAGGTVGGVIGMTVVYPLDTIKSRLQTS--------GRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFL------PPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPR 882
+PS + G + G++G+T+V+PLDT+KSRLQT GR R V ++ RK+G LYRG+ +P++ YGA+ AV+FS+ A FL A+A + P + GA+AG++++ +R ER+K V QV Y + + + LV+ GV GL G GAT+ RE Q +Y+ +Y+ K L + A + LAGG AG WL Y LDV K+R+Q A P Y GV DC +K++ EG VLFRGL A+LRAFP+H +F E +L AR R
Sbjct: 14 VPSVYDHAIAGQIAGMVGLTLVHPLDTVKSRLQTGCALAQTLDGRRR--GAYGVAVNLLRKDGAKGLYRGITAPMMAYGAINAVAFSANAGAKDFLRTTLGAEAA--ASAPAGALTGAFAGLVSSFVRGPAERLKTVQQVIDCDS--GRYRSATSTALTLVKEHGVVRGLFTGTGATIAREIPQCAVYFLTYDKVKSACLRALCGDADAHDAPAAARAGAIVLAGGSAGAFQWLLT-YPLDVTKSRIQAAPPHTYSGVIDCAVKSVVKEGPLVLFRGLNMALLRAFPLHASIFASCEAVHTML-ARAR 313
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: SLC25A29 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T2N0_9DINO) HSP 1 Score: 172 bits (435), Expect = 4.810e-48 Identity = 109/295 (36.95%), Postives = 154/295 (52.20%), Query Frame = 1
Query: 1 MPSFWQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDK------LTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 867
+P G V G++V YPLDTIK R+QT + + V +M +G Y GL SP++GYG AV+FS +A RFL R R A+D L+ + +AGA+AG +N R + +R+K V QV QG + +P + V ++ +GV GL G G TM+RE QFGIY+ ++ + L S P +A G LAG + WLPP+YC+DV+K+R+Q A G Y +R C G V RGLG ++R P+H FL YET + +L
Sbjct: 11 LPREMASFIAGQVSFSAGLSVAYPLDTIKVRMQTVAGAAEGGMLAVARNMVATQGLRGFYNGLTSPLLGYGMAGAVAFSGNDWATRFLKRWRSGAASDAEAKDTHLSFSDAFMAGAFAGFVNNVPRTIVDRLKTVAQV-QG--VTTPQA-----VRYILHHQGV-QGLLDGFGVTMVREVPQFGIYFSTFAA---FMLAITPESGERPPSWQVAGVGALAGVIQWLPPLYCVDVVKSRLQGAPVGTYSSMRHCAESLYAEHGWRVFVRGLGPTIIRGLPLHATTFLTYETLMRVL 293 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1144.1233.1 >prot_Ecto-sp9_F_contig1144.1233.1 ID=prot_Ecto-sp9_F_contig1144.1233.1|Name=mRNA_Ecto-sp9_F_contig1144.1233.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=313bp MPSFWQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMback to top mRNA from alignment at Ecto-sp9_F_contig1144:13906..17912- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1144.1233.1 ID=mRNA_Ecto-sp9_F_contig1144.1233.1|Name=mRNA_Ecto-sp9_F_contig1144.1233.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4007bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1144:13906..17912- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1144:13906..17912- >mRNA_Ecto-sp9_F_contig1144.1233.1 ID=mRNA_Ecto-sp9_F_contig1144.1233.1|Name=mRNA_Ecto-sp9_F_contig1144.1233.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1878bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1144:13906..17912- (Ectocarpus species9 EcSCA_722f female)back to top |