mRNA_Ecto-sp9_F_contig1144.1233.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1144.1233.1
Unique NamemRNA_Ecto-sp9_F_contig1144.1233.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 612 bits (1579), Expect = 2.500e-221
Identity = 304/312 (97.44%), Postives = 307/312 (98.40%), Query Frame = 1
Query:    1 MPSFWQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 936
            MPS WQELAGGT GGVIGMTVVYPLDTIKSRLQTSGRSRYSSI+NVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATD+LTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDY LPPDRTSTAVPEP+LLALAGGLAGCVMWLPP YCLDVIKTRMQTAEPGVYRGVRDCLMKTLR EGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE
Sbjct:    1 MPSLWQELAGGTAGGVIGMTVVYPLDTIKSRLQTSGRSRYSSISNVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYLLPPDRTSTAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 312          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Carnitine/acylcarnitine (carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI)

HSP 1 Score: 457 bits (1175), Expect = 5.800e-161
Identity = 224/226 (99.12%), Postives = 225/226 (99.56%), Query Frame = 1
Query:  259 FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 936
            FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREG+AMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLR EGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE
Sbjct:   12 FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 237          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Carnitine/acylcarnitine (carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.220e-102
Identity = 167/261 (63.98%), Postives = 188/261 (72.03%), Query Frame = 1
Query:  148 MARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKA----TDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTA----VPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSV 906
            MA  EG +S YRGLLSPV GYGAMFAVSFSSYG A RFL R          + ++ L EK  AG +AG MN+P R VF+RVK VMQVR G    +PYSWSGAC  DLVRREGV  GL RG+ +TMLRE LQ  IYYPSYE+ KD      R ST+    VPEP L  LAGG+AGC  WLPP+YCLDVIKTR+Q+AEPGVY G  DCL KT+R EG PVLFRGLG +MLRAFPMHGLVF+GYETTI LL  R   +C PT+V
Sbjct:    1 MAAHEGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLLA---RRSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLTTR--ENC-PTAV 255          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Carnitine/acylcarnitine (carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.970e-83
Identity = 129/229 (56.33%), Postives = 163/229 (71.18%), Query Frame = 1
Query:  172 SLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 858
            SLYRGL SPV+GYG +FA+SFS+ G A R+L  R    A    ++ E  +AGAWAG + AP RQVFERVKGVMQVR G   ++PYSWSGAC+VDLVR EGV MGL RGMG+  +RE  QF +YYP+Y++AK   LP D   +    PI + LAGG+AG V WLPPIY +DV+KT++QTA PG Y+ + D   KT+  EG   LFRGLG +++RAFP+H  +F GYE T+
Sbjct:   20 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHIS----PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTM 244          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Mitochondrial (carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA)

HSP 1 Score: 235 bits (600), Expect = 3.770e-73
Identity = 127/261 (48.66%), Postives = 165/261 (63.22%), Query Frame = 1
Query:  148 MARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEI------------------AKDYFLPPDRTSTAVP-EPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 867
            M R+ G  SLYRGLLSP  G+G  FA+SF+ YG   RF    R+     +LTL E   +GAWAG++ +P RQ+FER+K VMQVR+  G   + PY WSG C+V LVR+EG+  GL RG+ AT LRE  QF +YYP YE+                    +  +   + S++ P  P LL LAGG+AG V WLPP YCLDV+K+RMQ+A PGVY  V DC  K+ + EG+ V FRGL  A++RAFP++  +FLGYETT+  L
Sbjct:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Mitochondrial (carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC)

HSP 1 Score: 233 bits (594), Expect = 5.000e-72
Identity = 134/289 (46.37%), Postives = 176/289 (60.90%), Query Frame = 1
Query:   10 FWQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACVVDL-VRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 867
            F  EL  GTVGGV+G+T+++PLDT K RLQ      Y    +V+ SM R+ G  SLYRGLLSP  G+G  FA+SF+ YG   RF    R+     +LTL E   +GAWAG++ +P RQ+FER+K VMQVR+  G   + PY WSG C+ ++ VR     M      G++     +      PS             +ST +P P LL LAGG+AG V WLPP YCLDV+K+RMQ+A PGVY  V DC  K+ + EG+ V FRGL  A++RAFP++  +FLGYETT+  L
Sbjct:    7 FVHELLAGTVGGVVGITLIFPLDTAKVRLQAYPH--YKGPIDVIRSMVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVRALQKMMAASNASGSSSNESNIVHR--KPS-------------SSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 274          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Solute (carrier family 25 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZ19_CAPO3)

HSP 1 Score: 198 bits (504), Expect = 2.510e-57
Identity = 123/307 (40.07%), Postives = 172/307 (56.03%), Query Frame = 1
Query:   16 QELAGGTVGGVIGMTVVYPLDTIKSRLQTS--GRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATD-----------KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGV-------------YRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 858
            Q L GGTVGG++G+   YP DT+K R+QT   G + Y+ + +    + + EG L+LY G+LSPVVG   + AV F SYG   ++LL R++                KL+  E  +A   AG++   +    ERVK  MQ   GK  +S       CV+ LVR  G++ GL +G   T+LRE   +G Y+ SY++AK  F  P +  + +  P LLALAGG+AG + W+P IY +DVIK+R+Q A+P               Y GV DC +++ R EG+ V FRGL   + RAFP H  VFLGYE T+
Sbjct:   78 QHLLGGTVGGIMGIVASYPFDTVKVRIQTQPPGSALYTGMVDCFRKIIKSEGALALYSGMLSPVVGVAGVKAVVFGSYGGISQWLLARKQGVVAGSEQPQQQQQPVKLSGFENALASCSAGLVATIVVTPVERVKVSMQASGGKAFKSTLD----CVLSLVRTAGISGGLFKGFVPTVLREVPSYGAYFISYDMAKRAFCQPGQDVSTL-SPGLLALAGGIAGVMAWVP-IYPIDVIKSRIQ-AQPSSALVAASSGSSSRPYSGVVDCAVRSYRAEGLGVFFRGLTPTIARAFPCHAAVFLGYELTL 377          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA)

HSP 1 Score: 194 bits (492), Expect = 5.680e-56
Identity = 119/291 (40.89%), Postives = 167/291 (57.39%), Query Frame = 1
Query:   13 WQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATD----KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGA 873
            W+    G   GV G+TVVYPLDT K RLQT     Y    + L ++ ++EG  +LYRG+ +P+ GYGA+ ++  S+YG     +LRRR A+A      +L++ E   AGA AGV++  +R   ERVK VMQVR+       +  S  C+V  +R EG+      G  AT+LRE  Q   Y+P++EI K    P   +S  +    LL +AGG+AG   WLPP+YC+DV+K+RM+    G   GV   L  ++  EG  VL RG+G AM+RAFPMH  +     TT +L+ A
Sbjct:   50 WKRGVSGLTAGVSGLTVVYPLDTTKLRLQTCP-GEYKGAFDCLRTVVKREGFAALYRGMSAPIAGYGAINSLLLSTYGMTA-VVLRRRNAEAAGGVDRELSMEESMAAGAVAGVVSTVLRAPVERVKAVMQVRRNPDGTKVFRNSWRCLVGTMRTEGLLSPFAAGR-ATLLRELFQGVAYFPAFEITKRALTPAGGSSNDLDFWRLL-IAGGVAGITQWLPPMYCIDVVKSRMEVPPAGSTPGVLGVLRASVAKEGGMVLLRGMGPAMVRAFPMHATIL----TTNELMTA 332          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: Mitochondrial (substrate/solute carrier n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PA99_OSTTA)

HSP 1 Score: 173 bits (438), Expect = 3.010e-48
Identity = 116/308 (37.66%), Postives = 165/308 (53.57%), Query Frame = 1
Query:    1 MPSFWQELAGGTVGGVIGMTVVYPLDTIKSRLQTS--------GRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFL------PPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPR 882
            +PS +     G + G++G+T+V+PLDT+KSRLQT         GR R      V  ++ RK+G   LYRG+ +P++ YGA+ AV+FS+   A  FL     A+A    + P   + GA+AG++++ +R   ER+K V QV         Y  + +  + LV+  GV  GL  G GAT+ RE  Q  +Y+ +Y+  K   L           + A      + LAGG AG   WL   Y LDV K+R+Q A P  Y GV DC +K++  EG  VLFRGL  A+LRAFP+H  +F   E    +L AR R
Sbjct:   14 VPSVYDHAIAGQIAGMVGLTLVHPLDTVKSRLQTGCALAQTLDGRRR--GAYGVAVNLLRKDGAKGLYRGITAPMMAYGAINAVAFSANAGAKDFLRTTLGAEAA--ASAPAGALTGAFAGLVSSFVRGPAERLKTVQQVIDCDS--GRYRSATSTALTLVKEHGVVRGLFTGTGATIAREIPQCAVYFLTYDKVKSACLRALCGDADAHDAPAAARAGAIVLAGGSAGAFQWLLT-YPLDVTKSRIQAAPPHTYSGVIDCAVKSVVKEGPLVLFRGLNMALLRAFPLHASIFASCEAVHTML-ARAR 313          
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Match: SLC25A29 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T2N0_9DINO)

HSP 1 Score: 172 bits (435), Expect = 4.810e-48
Identity = 109/295 (36.95%), Postives = 154/295 (52.20%), Query Frame = 1
Query:    1 MPSFWQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDK------LTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 867
            +P        G V    G++V YPLDTIK R+QT   +    +  V  +M   +G    Y GL SP++GYG   AV+FS   +A RFL R R   A+D       L+  +  +AGA+AG +N   R + +R+K V QV QG  + +P +     V  ++  +GV  GL  G G TM+RE  QFGIY+ ++     + L     S   P    +A  G LAG + WLPP+YC+DV+K+R+Q A  G Y  +R C        G  V  RGLG  ++R  P+H   FL YET + +L
Sbjct:   11 LPREMASFIAGQVSFSAGLSVAYPLDTIKVRMQTVAGAAEGGMLAVARNMVATQGLRGFYNGLTSPLLGYGMAGAVAFSGNDWATRFLKRWRSGAASDAEAKDTHLSFSDAFMAGAFAGFVNNVPRTIVDRLKTVAQV-QG--VTTPQA-----VRYILHHQGV-QGLLDGFGVTMVREVPQFGIYFSTFAA---FMLAITPESGERPPSWQVAGVGALAGVIQWLPPLYCVDVVKSRLQGAPVGTYSSMRHCAESLYAEHGWRVFVRGLGPTIIRGLPLHATTFLTYETLMRVL 293          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1144.1233.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.500e-22197.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Carnitine/acylcarnitine5.800e-16199.12carrier protein n=1 Tax=Ectocarpus siliculosus Tax... [more]
Carnitine/acylcarnitine2.220e-10263.98carrier protein n=1 Tax=Ectocarpus siliculosus Tax... [more]
Carnitine/acylcarnitine1.970e-8356.33carrier protein n=1 Tax=Tribonema minus TaxID=3033... [more]
Mitochondrial3.770e-7348.66carrier family n=1 Tax=Nannochloropsis gaditana Ta... [more]
Mitochondrial5.000e-7246.37carrier family n=1 Tax=Nannochloropsis gaditana (s... [more]
Solute2.510e-5740.07carrier family 25 n=2 Tax=Capsaspora owczarzaki (s... [more]
Hypothetical5.680e-5640.89protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486... [more]
Mitochondrial3.010e-4837.66substrate/solute carrier n=2 Tax=Ostreococcus taur... [more]
SLC25A294.810e-4836.95protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1144contigEcto-sp9_F_contig1144:13906..17912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.8
Seed ortholog evalue2.5e-127
Seed eggNOG ortholog2880.D7FM07
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncarnitine/acylcarnitine carrier protein
Ec32 orthologEc-22_000440.1
Exons8
Model size939
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1144.1233.1prot_Ecto-sp9_F_contig1144.1233.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1144 13906..17912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928393.8793268-CDS-Ecto-sp9_F_contig1144:13905..140861622928393.8793268-CDS-Ecto-sp9_F_contig1144:13905..14086Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 13906..14086 -
1692277857.1461482-CDS-Ecto-sp9_F_contig1144:13905..140861692277857.1461482-CDS-Ecto-sp9_F_contig1144:13905..14086Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 13906..14086 -
1622928393.957848-CDS-Ecto-sp9_F_contig1144:14540..147491622928393.957848-CDS-Ecto-sp9_F_contig1144:14540..14749Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 14541..14749 -
1692277857.1641123-CDS-Ecto-sp9_F_contig1144:14540..147491692277857.1641123-CDS-Ecto-sp9_F_contig1144:14540..14749Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 14541..14749 -
1622928393.9694734-CDS-Ecto-sp9_F_contig1144:15471..155561622928393.9694734-CDS-Ecto-sp9_F_contig1144:15471..15556Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 15472..15556 -
1692277857.1758776-CDS-Ecto-sp9_F_contig1144:15471..155561692277857.1758776-CDS-Ecto-sp9_F_contig1144:15471..15556Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 15472..15556 -
1622928393.9802895-CDS-Ecto-sp9_F_contig1144:15993..160641622928393.9802895-CDS-Ecto-sp9_F_contig1144:15993..16064Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 15994..16064 -
1692277857.1839318-CDS-Ecto-sp9_F_contig1144:15993..160641692277857.1839318-CDS-Ecto-sp9_F_contig1144:15993..16064Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 15994..16064 -
1622928393.9954033-CDS-Ecto-sp9_F_contig1144:16525..166491622928393.9954033-CDS-Ecto-sp9_F_contig1144:16525..16649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 16526..16649 -
1692277857.1923358-CDS-Ecto-sp9_F_contig1144:16525..166491692277857.1923358-CDS-Ecto-sp9_F_contig1144:16525..16649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 16526..16649 -
1622928394.0064647-CDS-Ecto-sp9_F_contig1144:16927..170311622928394.0064647-CDS-Ecto-sp9_F_contig1144:16927..17031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 16928..17031 -
1692277857.2014246-CDS-Ecto-sp9_F_contig1144:16927..170311692277857.2014246-CDS-Ecto-sp9_F_contig1144:16927..17031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 16928..17031 -
1622928394.0171416-CDS-Ecto-sp9_F_contig1144:17345..174181622928394.0171416-CDS-Ecto-sp9_F_contig1144:17345..17418Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 17346..17418 -
1692277857.2104816-CDS-Ecto-sp9_F_contig1144:17345..174181692277857.2104816-CDS-Ecto-sp9_F_contig1144:17345..17418Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 17346..17418 -
1622928394.0316067-CDS-Ecto-sp9_F_contig1144:17820..179121622928394.0316067-CDS-Ecto-sp9_F_contig1144:17820..17912Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 17821..17912 -
1692277857.2281017-CDS-Ecto-sp9_F_contig1144:17820..179121692277857.2281017-CDS-Ecto-sp9_F_contig1144:17820..17912Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1144 17821..17912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1144.1233.1

>prot_Ecto-sp9_F_contig1144.1233.1 ID=prot_Ecto-sp9_F_contig1144.1233.1|Name=mRNA_Ecto-sp9_F_contig1144.1233.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=313bp
MPSFWQELAGGTVGGVIGMTVVYPLDTIKSRLQTSGRSRYSSIANVLTSM
ARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDKL
TLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVV
DLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTA
VPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMK
TLRVEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPT
SVNTSLVKQVLE*
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mRNA from alignment at Ecto-sp9_F_contig1144:13906..17912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1144.1233.1 ID=mRNA_Ecto-sp9_F_contig1144.1233.1|Name=mRNA_Ecto-sp9_F_contig1144.1233.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4007bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1144:13906..17912- (Ectocarpus species9 EcSCA_722f female)
ATGCCTTCATTCTGGCAAGAGCTTGCCGGAGGTACTGTAGGCGGGGTCAT CGGAATGACGGTGGTCTACCCGTTAGACACCATAAAGTCCAGGTAGGTTG TGTTCTCACGGTGATTTGTGTACCGTCCATGGTCGTCGGGGTTGTCTTGC CGCGCTCTCCACAGACTTCACGACAAGGAGAGGGAAGAGGCCACGTGCCG TTGGCTGCATATTATTAACGATCACATTATTTATAAAGCTAGTTGGTACT ACCTATCGTACGTAGAGCATGAGAAGGAACTTGGAAGCGTTTGCGGGTGG TTAAGAACCAGGACATATATGCACGTGCGTGTGAATGCTTTGTTTTGGGC CGCAAAAGTATCACTGACCGCACAATAAGTACACCTACCAGACTCAACAC TTTCGGAGGGATGATGGCCAGTCCTCTCAAACCTTGTCATCGCATGACAC CGGTTGACCGTGTGTTTTTCCTTCAATGCAACATTTTCTCACAGACTGCA GACTTCTGGACGCTCGAGATACTCGAGCATCGCGAACGTACTCACATCGA TGGCGAGAAAAGAAGGGGTAAGTCGAGGCGATTCATGCCAACGGTAGGGG TACACGAACTGCGTCTACATGAAGTCTCCAAAGTGACAAATTCTATGGAT TCATGCCATGGTAGGCGTGCACAAATCGCTTGTGAGTCTCCAAAGTGAGA AGCTCGACACCTCAGCCTGGAGTTGATACTGACGATAGTCTACACCGTCG TCGTGGTTGTCGAGTGGTAATTTGTTGTTCCGGTCCCGTTTCCCTGTGCG CGCGCAATAGTTTGAACCCATCTGCAAAACCTTAGCTATTATTATTGCTC CCGTCCACCCCTTGTCGTTTACCTCTCACAGACGCTGTCCCTATACCGGG GCCTTCTCTCTCCAGTCGTTGGCTACGGAGCTATGTTCGCTGTGTCATTT TCCTCCTACGGCTACGCCGGCAGGTTTCTTCTACGGTGAGCATTCATCAA GGTCGCCTACAGCACCTCTACTGAATACCGAGATTTATCACGATCGTCAA AGATCAAACTAAATAGATGTTCAGGCCCTCAGGACAAATGCCATAATTTT TGATATTCGTTCTTTTATTTTGGTGAGATATGCTCAAACATGGAGTCGCG GAGCAGAGGTGAGAACCGATTGCTCGGTAGTCGATGCCAACAGAGAAGCG ACCTCTAACTTTTGGTGGTCTGTGCGCGCTTACTGGGCATTTCGTTCCCA CTGGTTTGGTCAGGCGGAGAGAGGCGAAAGCAACCGACAAGCTGACCCTC CCTGAGAAGGGAATCGCTGGGGCGTGGGCTGGCGTAATGAACGCTCCTAT GCGACAGGTGTTCGAGAGGGTCAAGGGAGTCATGCAGGTGAAAACAGAGA CCGAAGCAAGCGTCGAACGCACCAGGTTGTCGGGCCTCTCGGCAAGGCCA TGTTTGCTGTGAGAGGAGCCTCGCACGTTAGCCGAACACGCAATCGGAGG TGCATCCTTCGCCGTACCGCAAGAAGCTCACGCAACACAGTTAGGTATAC TCCGAGTTAGTTGGACCAGCGGATATTAGAAGATACTGAGTAGAGATCAG AAAGATTATTCAATATGAAGACAAAACAACAACAACAACAACAACAACAA CAACAACAACAACAACAACTACAACAACGACAACAACAACAACAACAAAA ACACTAGCAGAGCAAAGCTCTTCCCGAAAAACGCGAGAAACGCACTCCGT TGGCGTGCCTCTCTCGACTCGAGCGATTCCCCTGTACTACCTGACGAAGA ATGACTGCGAAAGTGATGTGCCTGCTCGCCTCCGGTGGGCGGCGGCAGGT GCGGCAAGGAAAGAAGCTGCAATCGCCGTACTCTTGGAGCGGGGCTTGCG TTGTGGACCTTGTGCGAAGGTGAGAGGCTGCAAGCATTGCTTTCCAGCCG GGCGGGGGAAGGGAAGGAGGCCCCGCTTCATACCTTCCGCGTCTCCGATG GCAATACTCCGCGGAGAGATCACTGCGAATGCTTCTTGCACGGTGGTAGT AGTACCGCATGGTGGCCTGTGACCCAATACGGGACGTGGGCTGCGGGCTC AACAGGAACGCCGAGGGTAGGCAGCTGCTCTGCCGAGTGCGGCGTCTGTG GCTGCGATTCTCGGGGAGGTGTAGGCTATTGGAGGCGGGTAGTGGAAGGG AGTGGCAGACTTCCCTACGGGCTACCGATCCCGTGAATGTTGGTTTTGTT CGGAGGAACGTAGACGTGCTGTATCCCTCCGAAGAACTATGTATTCCTTC ACTCTTGACGTCTCCGCACGGTGTTTTGTTGCTTGTTCACTGCCGTGTTG TTACAGGGAGGGTGTTGCCATGGGGCTATGTCGGGGCATGGGAGCGACCA TGCTCAGGGAGCCCCTTCAGTTCGGCATCTACTACCCATCGGTGCGGCTA AAATAGAATGCAGTGGTGGTCCATGTATTCGGCCGTATAATGCTTAAGGG AGTTGGCCGCCTTATTCCGAGTACCCGGCACTATCTAGAGTATGAGACGA CTTGAATATTTCATCTGGGTCAAACGATTTCACAGGCCTTAGTTATGCGG CCTTCTACGGGAACAACTCCAGTGTGGCCTAAACCAGGTTTCCTGACGTT GGAGTGGGATGGAGAGGGGAAGCGCCTGTGGTAGTTGAGCCGGGATGGGC GGACCTAGCCCAAGTGCTGGACGAAGAAGAAAGAAACGAAATATCAAGCA AGGCATGCAGTAACAACAACCTTTCCCCGACAGAAACGTCTCCTCTCGCT AGAGGTACAATTCCCGCTCGAAATCACACTTGCCGCCGAAACACGTCCAC GGCACTTTCGCCCGTGGGGGTAGCTCCGAGAGCAATACCCCCTTCTGGTC TACCGCATATGCGACGGCATAAAAATGACCGTGAGTATTTTGCGAGTGCC CCCTGCCTGCCAAATGTAAAACGTTTGGTTAGCCGGGATGCCCAATCAAT AAATGACATACCTCGTTCATCCTTGCGAAGCGCAGCCTGGGCCGCGAAAA CCCGGCATATCGCTCCGTCCCGGCATGGCAGGAATGCTCTAGGTCAATGG TCCAACGACTATGGCTCGACCTGCAACCCCCCCCCCTTTCCCCCTCTTTC ATGCAAACTATAGTACGAGATTGCCAAGGACTACTTCTTGCCTCCGGACC GGACAAGCACGGCGGTGCCCGAGCCGATCCTCCTGGCCCTGGCGGGGGGG CTAGCGGGGTGCGTGATGTGGCTCCCGCCGATCTACTGCCTGGACGTGAT CAAGACGAGGATGCAGACGGCGGAGCCTGGGGTGTACCGAGGAGTGCGGG ACTGCTTGATGAAGACCCTGAGGTGTGGGAAACTATTTTGCACCAAGCGG GGTGGTGGTTGCCGTATTTCGTGGCGGATTGTACGACGACTACTACGATT GCGTGTTGGTCTGTTGGAGGGAAATCACGGTTCTTTAGCAGTTGATGACA AAAAAAGCAATTTCCGGCTATTTTATGTTCCGTCGAGAATGGTGCGGCGG CGGCTCTGGGGTCTCACCCGACCTGGGCGTAGATCGCGCTTAAGTCTTGG GGGGCCGCGTTACCTCATCAGGCATATTCTAGTCCGTGATTCTGCAAGCG TGCTTCTCAGTGCTCTCCTTACGATATAGCACGAACGCTCTGGGGGAGGT GCACCGAACAGAACATCGGGACGGCTTCTTGGTATACAACAAGAAAATCC TCCAACCGAGTAAGTTCTAACCCTTGACACTCCTATGACAACATACGCCC GTTGTGGTGACTTTCTGTTGCCGCAGGGTGGAGGGCATGCCGGTGCTGTT CAGGGGGCTGGGAGCGGCCATGCTACGTGCGTTCCCGATGCACGGCCTCG TGTTCCTCGGCTACGAGACCACCATCGACCTGTTGGGTGCCCGGCCGCGG TCCTCCTGCAGCCCAACGAGCGTCAACACGTCATTAGTTAAGCAGGTCCT GGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1144:13906..17912-

>mRNA_Ecto-sp9_F_contig1144.1233.1 ID=mRNA_Ecto-sp9_F_contig1144.1233.1|Name=mRNA_Ecto-sp9_F_contig1144.1233.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1878bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1144:13906..17912- (Ectocarpus species9 EcSCA_722f female)
ATGCCTTCATTCTGGCAAGAGCTTGCCGGAGGTACTGTAGGCGGGGTCAT
CGGAATGACGGTGGTCTACCCGTTAGACACCATAAAGTCCAGATGCCTTC
ATTCTGGCAAGAGCTTGCCGGAGGTACTGTAGGCGGGGTCATCGGAATGA
CGGTGGTCTACCCGTTAGACACCATAAAGTCCAGACTGCAGACTTCTGGA
CGCTCGAGATACTCGAGCATCGCGAACGTACTCACATCGATGGCGAGAAA
AGAAGGGACTGCAGACTTCTGGACGCTCGAGATACTCGAGCATCGCGAAC
GTACTCACATCGATGGCGAGAAAAGAAGGGACGCTGTCCCTATACCGGGG
CCTTCTCTCTCCAGTCGTTGGCTACGGAGCTATGTTCGCTGTGTCATTTT
CCTCCTACGGCTACGCCGGCAGGTTTCTTCTACGACGCTGTCCCTATACC
GGGGCCTTCTCTCTCCAGTCGTTGGCTACGGAGCTATGTTCGCTGTGTCA
TTTTCCTCCTACGGCTACGCCGGCAGGTTTCTTCTACGGCGGAGAGAGGC
GAAAGCAACCGACAAGCTGACCCTCCCTGAGAAGGGAATCGCTGGGGCGT
GGGCTGGCGTAATGAACGCTCCTATGCGACAGGTGTTCGAGAGGGTCAAG
GGAGTCATGCAGGCGGAGAGAGGCGAAAGCAACCGACAAGCTGACCCTCC
CTGAGAAGGGAATCGCTGGGGCGTGGGCTGGCGTAATGAACGCTCCTATG
CGACAGGTGTTCGAGAGGGTCAAGGGAGTCATGCAGGTGCGGCAAGGAAA
GAAGCTGCAATCGCCGTACTCTTGGAGCGGGGCTTGCGTTGTGGACCTTG
TGCGAAGGTGCGGCAAGGAAAGAAGCTGCAATCGCCGTACTCTTGGAGCG
GGGCTTGCGTTGTGGACCTTGTGCGAAGGGAGGGTGTTGCCATGGGGCTA
TGTCGGGGCATGGGAGCGACCATGCTCAGGGAGCCCCTTCAGTTCGGCAT
CTACTACCCATCGGGAGGGTGTTGCCATGGGGCTATGTCGGGGCATGGGA
GCGACCATGCTCAGGGAGCCCCTTCAGTTCGGCATCTACTACCCATCGTA
CGAGATTGCCAAGGACTACTTCTTGCCTCCGGACCGGACAAGCACGGCGG
TGCCCGAGCCGATCCTCCTGGCCCTGGCGGGGGGGCTAGCGGGGTGCGTG
ATGTGGCTCCCGCCGATCTACTGCCTGGACGTGATCAAGACGAGGATGCA
GACGGCGGAGCCTGGGGTGTACCGAGGAGTGCGGGACTGCTTGATGAAGA
CCCTGAGTACGAGATTGCCAAGGACTACTTCTTGCCTCCGGACCGGACAA
GCACGGCGGTGCCCGAGCCGATCCTCCTGGCCCTGGCGGGGGGGCTAGCG
GGGTGCGTGATGTGGCTCCCGCCGATCTACTGCCTGGACGTGATCAAGAC
GAGGATGCAGACGGCGGAGCCTGGGGTGTACCGAGGAGTGCGGGACTGCT
TGATGAAGACCCTGAGGGTGGAGGGCATGCCGGTGCTGTTCAGGGGGCTG
GGAGCGGCCATGCTACGTGCGTTCCCGATGCACGGCCTCGTGTTCCTCGG
CTACGAGACCACCATCGACCTGTTGGGTGCCCGGCCGCGGTCCTCCTGCA
GCCCAACGAGCGTCAACACGTCATTAGTTAAGCAGGTCCTGGAGTAGGGT
GGAGGGCATGCCGGTGCTGTTCAGGGGGCTGGGAGCGGCCATGCTACGTG
CGTTCCCGATGCACGGCCTCGTGTTCCTCGGCTACGAGACCACCATCGAC
CTGTTGGGTGCCCGGCCGCGGTCCTCCTGCAGCCCAACGAGCGTCAACAC
GTCATTAGTTAAGCAGGTCCTGGAGTAG
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