mRNA_Ecto-sp9_F_contig1143.1226.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1143.1226.1
Unique NamemRNA_Ecto-sp9_F_contig1143.1226.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1143.1226.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1143contigEcto-sp9_F_contig1143:6148..6817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size670
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1143.1226.1prot_Ecto-sp9_F_contig1143.1226.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1143 6218..6598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928392.5944579-UTR-Ecto-sp9_F_contig1143:6147..62171622928392.5944579-UTR-Ecto-sp9_F_contig1143:6147..6217Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1143 6148..6217 +
1692277856.5422435-UTR-Ecto-sp9_F_contig1143:6147..62171692277856.5422435-UTR-Ecto-sp9_F_contig1143:6147..6217Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1143 6148..6217 +
1622928392.6282852-UTR-Ecto-sp9_F_contig1143:6598..68171622928392.6282852-UTR-Ecto-sp9_F_contig1143:6598..6817Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1143 6599..6817 +
1692277856.5634162-UTR-Ecto-sp9_F_contig1143:6598..68171692277856.5634162-UTR-Ecto-sp9_F_contig1143:6598..6817Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1143 6599..6817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928392.6140547-CDS-Ecto-sp9_F_contig1143:6217..65981622928392.6140547-CDS-Ecto-sp9_F_contig1143:6217..6598Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1143 6218..6598 +
1692277856.5530808-CDS-Ecto-sp9_F_contig1143:6217..65981692277856.5530808-CDS-Ecto-sp9_F_contig1143:6217..6598Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1143 6218..6598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1143.1226.1

>prot_Ecto-sp9_F_contig1143.1226.1 ID=prot_Ecto-sp9_F_contig1143.1226.1|Name=mRNA_Ecto-sp9_F_contig1143.1226.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=127bp
MQHISIHVHGWPTPNIAAALGDSSIARVDVWGCHHHNGSSLRLPPATTRC
PHISLYLTIQHYVCLTYNMVLSYFPKSGAIPSKPQHHARNKGAFIAAGIL
CIVRGQHAVDVTPTCGYTVQTTHIQT*
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mRNA from alignment at Ecto-sp9_F_contig1143:6148..6817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1143.1226.1 ID=mRNA_Ecto-sp9_F_contig1143.1226.1|Name=mRNA_Ecto-sp9_F_contig1143.1226.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=670bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1143:6148..6817+ (Ectocarpus species9 EcSCA_722f female)
GTCCGGGTCGGAGCGGGAGCGGCAAGGATACCTGATCACCATTTCTTGTT
ATGAAACGGCAGCAACCGAAATGCAACATATATCCATACATGTACACGGC
TGGCCGACTCCAAACATCGCAGCGGCGCTTGGTGATAGTTCCATCGCGCG
TGTGGATGTTTGGGGTTGTCATCACCACAATGGTTCCTCGCTACGTCTCC
CACCAGCAACAACGCGATGCCCACACATTTCACTATATCTGACCATACAA
CACTATGTATGTCTGACCTACAACATGGTCCTATCCTATTTTCCGAAGAG
CGGTGCAATCCCATCGAAACCCCAACATCACGCCCGCAACAAGGGCGCGT
TCATCGCCGCAGGAATACTCTGTATTGTAAGAGGACAACATGCCGTGGAC
GTCACCCCCACATGTGGCTACACTGTTCAAACCACACACATACAGACGTG
ATGGCGCTTTTGCCAAAACGAAGAAACCCCCCGGAAATTTGATCGGTTCG
TCCTCACTAGATGTCAAGGTTAATAAAACGTGCTCAAAAACGACAACAAC
CAGACATGGAGCGTGCTCCTACCGACGCCTGAAAGACAAAACGCCAACAG
CATTAAGTCCCTGCACGCGTGAATTTAGGGTGATTGGTTCGGTCCTCCGC
TCACCCTACCCACAACCCCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1143:6148..6817+

>mRNA_Ecto-sp9_F_contig1143.1226.1 ID=mRNA_Ecto-sp9_F_contig1143.1226.1|Name=mRNA_Ecto-sp9_F_contig1143.1226.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1143:6148..6817+ (Ectocarpus species9 EcSCA_722f female)
ATGCAACATATATCCATACATGTACACGGCTGGCCGACTCCAAACATCGC
AGCGGCGCTTGGTGATAGTTCCATCGCGCGTGTGGATGTTTGGGGTTGTC
ATCACCACAATGGTTCCTCGCTACGTCTCCCACCAGCAACAACGCGATGC
CCACACATTTCACTATATCTGACCATACAACACTATGTATGTCTGACCTA
CAACATGGTCCTATCCTATTTTCCGAAGAGCGGTGCAATCCCATCGAAAC
CCCAACATCACGCCCGCAACAAGGGCGCGTTCATCGCCGCAGGAATACTC
TGTATTGTAAGAGGACAACATGCCGTGGACGTCACCCCCACATGTGGCTA
CACTGTTCAAACCACACACATACAGACGTGAATGCAACATATATCCATAC
ATGTACACGGCTGGCCGACTCCAAACATCGCAGCGGCGCTTGGTGATAGT
TCCATCGCGCGTGTGGATGTTTGGGGTTGTCATCACCACAATGGTTCCTC
GCTACGTCTCCCACCAGCAACAACGCGATGCCCACACATTTCACTATATC
TGACCATACAACACTATGTATGTCTGACCTACAACATGGTCCTATCCTAT
TTTCCGAAGAGCGGTGCAATCCCATCGAAACCCCAACATCACGCCCGCAA
CAAGGGCGCGTTCATCGCCGCAGGAATACTCTGTATTGTAAGAGGACAAC
ATGCCGTGGACGTCACCCCCACATGTGGCTACACTGTTCAAACCACACAC
ATACAGACGTGA
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