mRNA_Ecto-sp9_F_contig11429.1225.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11429.1225.1
Unique NamemRNA_Ecto-sp9_F_contig11429.1225.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 5.640e-51
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:    1 VAFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSHAQ 285
            VAFSCIFAI+SLMVFELLRPHVNH+DRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALV VNIMFFLSIW+NACTTAKAMFSRSHAQ
Sbjct: 1582 VAFSCIFAILSLMVFELLRPHVNHIDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIWFNACTTAKAMFSRSHAQ 1676
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BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Adhesin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 2.650e-50
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:    1 VAFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSHAQ 285
            VAFSCIFAI+SLMVFELLRPHVN+LDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALV VNIMFFLSIW+NACTTAKAMFSRSHAQ
Sbjct: 1307 VAFSCIFAILSLMVFELLRPHVNNLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIWFNACTTAKAMFSRSHAQ 1401
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Asn/thr-rich (large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.710e-49
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 VAFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSHAQ 285
            VAFSCIFAIVSLMVFELLRPHVN+LDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALV VNIMFFLSIW+NAC T KAMFSRSHAQ
Sbjct: 1349 VAFSCIFAIVSLMVFELLRPHVNNLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIWFNACATTKAMFSRSHAQ 1443
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.180e-34
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 VAFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSH 279
            VAF C+FA +SL+ FELLRPH +HLD QLYRTGCLVI FTNFLAL+IK+  A+ DS GSA YSV L+ VN++FFLSI+WN    AKA FSR H
Sbjct: 1777 VAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVANPDSRGSAVYSVVLIIVNVLFFLSIFWNTWAAAKASFSRRH 1869
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Adhesin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.970e-34
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    1 VAFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSHAQ 285
            VAF C+FA +SL+ FELLRPH +HLD QLYRTGCLVI FTNFLAL+IK+  A  DS GS  YSV L+ VN++FFLSI+WN    AKA FSR H Q
Sbjct: 1571 VAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVASPDSRGSEVYSVVLIIVNVLFFLSIFWNTWAAAKASFSRRHVQ 1665
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A6_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.130e-32
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 VAFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSHAQ 285
            VAF C+FA +SL+ FE LRPH++HLD +LYRTGCLVI FTNFLAL+IK+  A  DS G   YS+ L+ VN++FFLSI+W+    AKA  SR H Q
Sbjct:   21 VAFGCVFAFLSLLAFERLRPHIDHLDMELYRTGCLVIFFTNFLALMIKANVASPDSRGCKVYSIVLIIVNVLFFLSIFWDTWAAAKASSSRRHVQ 115
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.600e-23
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 VAFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSH 279
            VAF C+FA +SL+VFELLRPH +HLD QLYRTGCLVI  TN LA V     A   S     YS+ L+ VN++F LSI+ N    AKA FSR H
Sbjct:  510 VAFGCVFAFLSLLVFELLRPHTDHLDMQLYRTGCLVIFLTNSLANV-----ASPCSRSCEVYSIVLIIVNVLFVLSIFGNTWAAAKASFSRRH 597
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 9.210e-18
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   97 GCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSHAQ 285
            GCLVI FTNFLAL+IK+  A  DS G   YSV L+ VN++FFLSI+WN    AKA FSR H Q
Sbjct:   18 GCLVIFFTNFLALMIKANVASPDSRGCEVYSVVLIIVNVLFFLSIFWNTLAAAKASFSRRHVQ 80
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Polymorphic (outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.210e-12
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    4 AFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSI 231
            A +CIFA VSL+ FELLRPH++  D  LYR GC++I  +NFLAL+IK  AA + +   AA    L+AVN+   L++
Sbjct: 1067 AMACIFAFVSLLGFELLRPHLDPADMWLYRLGCVIIFLSNFLALLIKVDAAGEGNR--AALGGILIAVNVFLILAV 1140
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.220e-12
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    4 AFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVAVNIMFFLSI 231
            A +CIFA VSL+ FELLRPH++  D  LYR GC++I  +NFLAL+IK  AA + +   AA    L+AVN+   L++
Sbjct: 1409 AMACIFAFVSLLGFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEGNR--AALGGILIAVNVFLILAV 1482
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11429.1225.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Uncharacterized5.640e-5195.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Adhesin-like2.650e-5095.79protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Asn/thr-rich1.710e-4994.74large protein family protein n=1 Tax=Ectocarpus si... [more]
Uncharacterized2.180e-3467.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Adhesin-like2.970e-3466.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.130e-3260.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.600e-2356.99protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.210e-1861.90protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Polymorphic1.210e-1250.00outer membrane protein n=1 Tax=Ectocarpus siliculo... [more]
Uncharacterized1.220e-1250.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11429contigEcto-sp9_F_contig11429:1598..2830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2880.D7FUB5
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size287
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11429.1225.1prot_Ecto-sp9_F_contig11429.1225.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11429 1598..2829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928392.4989235-CDS-Ecto-sp9_F_contig11429:1597..16291622928392.4989235-CDS-Ecto-sp9_F_contig11429:1597..1629Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11429 1598..1629 +
1692277856.5118525-CDS-Ecto-sp9_F_contig11429:1597..16291692277856.5118525-CDS-Ecto-sp9_F_contig11429:1597..1629Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11429 1598..1629 +
1622928392.5284247-CDS-Ecto-sp9_F_contig11429:2297..23611622928392.5284247-CDS-Ecto-sp9_F_contig11429:2297..2361Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11429 2298..2361 +
1692277856.5229805-CDS-Ecto-sp9_F_contig11429:2297..23611692277856.5229805-CDS-Ecto-sp9_F_contig11429:2297..2361Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11429 2298..2361 +
1622928392.5407844-CDS-Ecto-sp9_F_contig11429:2640..28291622928392.5407844-CDS-Ecto-sp9_F_contig11429:2640..2829Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11429 2641..2829 +
1692277856.532282-CDS-Ecto-sp9_F_contig11429:2640..28291692277856.532282-CDS-Ecto-sp9_F_contig11429:2640..2829Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11429 2641..2829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11429.1225.1

>prot_Ecto-sp9_F_contig11429.1225.1 ID=prot_Ecto-sp9_F_contig11429.1225.1|Name=mRNA_Ecto-sp9_F_contig11429.1225.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=95bp
VAFSCIFAIVSLMVFELLRPHVNHLDRQLYRTGCLVILFTNFLALVIKSG
AADKDSSGSAAYSVALVAVNIMFFLSIWWNACTTAKAMFSRSHAQ
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mRNA from alignment at Ecto-sp9_F_contig11429:1598..2830+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11429.1225.1 ID=mRNA_Ecto-sp9_F_contig11429.1225.1|Name=mRNA_Ecto-sp9_F_contig11429.1225.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1233bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11429:1598..2830+ (Ectocarpus species9 EcSCA_722f female)
GTCGCCTTCAGCTGTATCTTCGCCATTGTCAGGTAGGCAGGACGGTATGC
TATGGGGTTTATATCTCGAAAAAGGGTTGGTACCTCATCTATCTCCCCCA
GGCATTCGTCAGCCGGGTTTGGACGAGGACACGTTTCCGTGAAGATGTGG
TAGGCTGTCTGGATGGTAGTGAGGCTGAACGAAAGTGCGTTTGTACGGTC
CGAATCAGGCATCGAGGCCATGTCGTGCGCACCTTGCACGGTGCCTGTTT
ACATTTTTTGTCAGTGGGTCCGGTTCCGGTTGATTGAGGAGGGGTGGGTG
GAAGTGACTTTGGTATACGTTTTGATGCCATTTGTACAGACTCTGGTCAT
AGGGATGGTACGCCCCACAAATCGAGATCCCCGAAGGATCATTTTTTCTA
ACGACCAAGCATCGACATGCTGACATGAGCACCGCGATTTTCTCCCCGCT
ATGAAGCGAGTATTACTGTCTGTTTCGCGAAGTCTGACGACGAAGAAACG
ACGATGAAAAACTTCAGGGCTGAGGGCACACGGCGGTAGACCAAACAACT
CAATGCCCTCCCGCGTTGTTCGAGCCACGCGGTTCTGTACATCGGATCCA
AACAAAGGGATAAGTTCGATGCCTGGTGTCTTAATGGTCGCCCCATTTCC
TTTCCGCCCCCGAACACGCCGGATTGTTGACAATGTCCACATCGCAACAG
CCTCATGGTGTTCGAGCTTCTCCGGCCTCACGTCAATCATCTTGACAGGC
AGCTCTACCGGACGGTGAGTCGACAACGAGCTTGATGGCGTGCAACGCCA
AGCACGCTAGTGCGCCTAGAGACTGTACACTTCAAGACGGGACAAAGGGA
ACGAACTTGGCCGTCCATAGTTGTAAAACCTCTTGGTCCGGGAAGGATAA
TATTATCACCTTCGCCACCCCAGACCCCCGTCCCTCTCCCCTGGCAAAAG
GACAATTCGGAGGCCAGTTTCATGTGTAGCCCCCACATGCACGTTTCTGC
GCGCCGTTTCTGTCCCGGTCTGGCGCAACATCGTTGCCATCAGGGGTGCC
TCGTCATCCTGTTCACCAACTTCTTGGCGCTGGTCATCAAGTCGGGCGCA
GCAGACAAGGATTCAAGCGGCAGCGCCGCGTACTCTGTTGCACTGGTCGC
CGTGAACATAATGTTTTTCTTGTCCATCTGGTGGAATGCTTGTACCACGG
CGAAGGCGATGTTCAGCAGGAGCCATGCACAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11429:1598..2830+

>mRNA_Ecto-sp9_F_contig11429.1225.1 ID=mRNA_Ecto-sp9_F_contig11429.1225.1|Name=mRNA_Ecto-sp9_F_contig11429.1225.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11429:1598..2830+ (Ectocarpus species9 EcSCA_722f female)
GTCGCCTTCAGCTGTATCTTCGCCATTGTCAGGTCGCCTTCAGCTGTATC
TTCGCCATTGTCAGCCTCATGGTGTTCGAGCTTCTCCGGCCTCACGTCAA
TCATCTTGACAGGCAGCTCTACCGGACGCCTCATGGTGTTCGAGCTTCTC
CGGCCTCACGTCAATCATCTTGACAGGCAGCTCTACCGGACGGGGTGCCT
CGTCATCCTGTTCACCAACTTCTTGGCGCTGGTCATCAAGTCGGGCGCAG
CAGACAAGGATTCAAGCGGCAGCGCCGCGTACTCTGTTGCACTGGTCGCC
GTGAACATAATGTTTTTCTTGTCCATCTGGTGGAATGCTTGTACCACGGC
GAAGGCGATGTTCAGCAGGAGCCATGCACAGGGGTGCCTCGTCATCCTGT
TCACCAACTTCTTGGCGCTGGTCATCAAGTCGGGCGCAGCAGACAAGGAT
TCAAGCGGCAGCGCCGCGTACTCTGTTGCACTGGTCGCCGTGAACATAAT
GTTTTTCTTGTCCATCTGGTGGAATGCTTGTACCACGGCGAAGGCGATGT
TCAGCAGGAGCCATGCACAG
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