mRNA_Ecto-sp9_F_contig1142.1222.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig1142.1222.1
Unique Name	mRNA_Ecto-sp9_F_contig1142.1222.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig1142.1222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW7_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.090e-32
Identity = 70/79 (88.61%), Postives = 71/79 (89.87%), Query Frame = 3

Query:  165 PGRPTLSPAASLDLPALAAGGGLRPPTSRGAAEISGDLFWAPVPSSSPVCSGNPTPQTGETGFTVARGGGGAGSAPNGQ 401
            PGRPTLSP ASLDLPAL AGGGLRPPTS+GAAEISGDLFWA  PSSSPV SGNPTPQTG TGF  ARGGGGAGSAPNGQ
Sbjct:   76 PGRPTLSPTASLDLPALVAGGGLRPPTSKGAAEISGDLFWATAPSSSPVRSGNPTPQTGGTGFAAARGGGGAGSAPNGQ 154

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1142.1222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS24_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.240e-7
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 1

Query:   28 VETTHLEGTTGEAATARARAEAEELRGKLDAQQHLARQVALRRVTHRGAQRSRQLQVLIFRRWRLAA 228
            +E ++L+ T GEAATA ARAEAEE         HLARQVALRR T RGAQR  QLQV  FR WRLAA
Sbjct:  602 LEASYLDVTAGEAATAGARAEAEE---------HLARQVALRRGTRRGAQRLCQLQVSAFRLWRLAA 659

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1142.1222.1 vs.
Match: USP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.690e-5
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 3

Query:  228 GLRPPTSRGAAEISGDLFWAPVPSSSPVCSGNPTPQTGETGFTVARGGGGAG 383
            GLRP   R   EI+G L  AP  +SSPVC G+P+PQTGETGF  ARGGGG G
Sbjct:   14 GLRPSVLRD--EIAGRLSSAPASASSPVCRGHPSPQTGETGFAAARGGGGDG 63

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig1142.1222.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig1142.1222.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Uncharacterized	1.090e-32	88.61	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.240e-7	64.18	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
USP	1.690e-5	63.46	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig1142	contig	Ecto-sp9_F_contig1142:15905..18464 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-14_001630.1
Exons	4
Model size	1009
Cds size	615
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig1142.1222.1	prot_Ecto-sp9_F_contig1142.1222.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig1142 17333..18464 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928391.6533782-UTR-Ecto-sp9_F_contig1142:15904..16030	1622928391.6533782-UTR-Ecto-sp9_F_contig1142:15904..16030	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1142 15905..16030 +
1692277856.10549-UTR-Ecto-sp9_F_contig1142:15904..16030	1692277856.10549-UTR-Ecto-sp9_F_contig1142:15904..16030	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1142 15905..16030 +
1622928391.667288-UTR-Ecto-sp9_F_contig1142:16586..16688	1622928391.667288-UTR-Ecto-sp9_F_contig1142:16586..16688	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1142 16587..16688 +
1692277856.1158218-UTR-Ecto-sp9_F_contig1142:16586..16688	1692277856.1158218-UTR-Ecto-sp9_F_contig1142:16586..16688	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1142 16587..16688 +
1622928391.753293-UTR-Ecto-sp9_F_contig1142:17167..17332	1622928391.753293-UTR-Ecto-sp9_F_contig1142:17167..17332	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1142 17168..17332 +
1692277856.1273162-UTR-Ecto-sp9_F_contig1142:17167..17332	1692277856.1273162-UTR-Ecto-sp9_F_contig1142:17167..17332	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1142 17168..17332 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928391.7648222-CDS-Ecto-sp9_F_contig1142:17332..17916	1622928391.7648222-CDS-Ecto-sp9_F_contig1142:17332..17916	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1142 17333..17916 +
1692277856.1361556-CDS-Ecto-sp9_F_contig1142:17332..17916	1692277856.1361556-CDS-Ecto-sp9_F_contig1142:17332..17916	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1142 17333..17916 +
1622928391.7808697-CDS-Ecto-sp9_F_contig1142:18433..18464	1622928391.7808697-CDS-Ecto-sp9_F_contig1142:18433..18464	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1142 18434..18464 +
1692277856.145147-CDS-Ecto-sp9_F_contig1142:18433..18464	1692277856.145147-CDS-Ecto-sp9_F_contig1142:18433..18464	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1142 18434..18464 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig1142:15905..18464+
coding sequence from alignment at Ecto-sp9_F_contig1142:15905..18464+

protein sequence of mRNA_Ecto-sp9_F_contig1142.1222.1

>prot_Ecto-sp9_F_contig1142.1222.1 ID=prot_Ecto-sp9_F_contig1142.1222.1|Name=mRNA_Ecto-sp9_F_contig1142.1222.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=205bp
MARSRAGSPPHRHPRRRPCAADTRPPKQGGLGSPLPGVEAGPALRRMARS
RAGSPPHQHPRRRPCTADTRHPKQGGLGSPLPGAEAGPALRRMARSRAGS
PRHRHPRRRPCAADTRHPKQGRLGSPLSGAEAGPALRRMARSRTGSSRHQ
HPRRSPYAADTSHPKQGRLGSPPPGAEAGPDLCRVTPGRSGCQRRTLSRT
RRRST

mRNA from alignment at Ecto-sp9_F_contig1142:15905..18464+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig1142.1222.1 ID=mRNA_Ecto-sp9_F_contig1142.1222.1|Name=mRNA_Ecto-sp9_F_contig1142.1222.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2560bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1142:15905..18464+ (Ectocarpus species9 EcSCA_722f female)
ACGAGGAGAACGACCAGGAAGAGTCAGGTGGAGACCACGCACCTGGAAGG
CACCACGGGAGAGGCGGCCACTGCCAGGGCTAGGGCGGAGGCAGAGGAGC
TGCGGGGGAAGCTGGACGCACAGCAGGTGTGTGTTTTCTATCTCTGCATC
GACCGCGCTTCACGGCTGACCAATGAAAGTGAGAAGCAAAACACGAACAC
TTTCCAACCAAAGGGTAAGGATTCTACCGACAGGGAGGATGCAGGAGTTG
GACTGCAGTGTCCTGCTTCTCGTCCTCCCATGCTAACATCGTCTCCCTGC
ACTGGGTTGCCTTGTATTCGAACTCGCTTTACGCTAGTGTGTTTGTGGGT
ATTCAGTGTGTGAATTGTTTGGCAGGGAGCGTGCCGTTGTCGTTGGGGTG
TAAGCAATGAACTGCTATATCCGGGCCCTTAAGTAGACCGAGGTGCGAGC
GGCAGCAGAATCTTTCTCTCCTGCTGCAGGTGACGCGAGGTTTTCTTTCG
GCTAGCAGGAAGAATTACCATTTCTTTGATCATTCGGAAGGCGAAATATT
GATTGACGTGTTGACGGCGAGGTGTGTGACTGTTTTCATTGGGATTCGCC
GTTGATTCCGAATCTGTTCCTTGCTTGCTCACTTCTAAATTCCATCCCAT
GTGTGCTTCTCCTGCACCGCTGGTCTCGACAGCACCTTGCGCGGCAGGTC
GCGCTTCGTCGGGTGACCCACCGGGGCGCCCAACGCTCTCGCCAGCTGCA
AGTCTTGATCTTCCGGCGCTGGCGGCTGGCGGCGGTGACGTTACCGTCGA
AAACTTGAGGCTGGATTTGGCACTGCCTCATCAAACCTCTGGTTTGCGAC
GGTAGTAGTCACCGCCGCCAGCCGCCAGCGCCAGAAGGCCGAGACTTGGA
GCTGACGAGGGCGTTGGGCACCCCGGCGGGTCACCCGACGAAGCGCGACC
TGCCGCGCAAGGTGCTGTCGAGACCGGCGCGTTGTTTGTTTTTGCGGCTA
GGATCAGAAATCACGTTTCTATGTTCTTTAACAAGAATCGCAGCTAGCTG
AAGTCGCTCCTGCAAACTTGGACCATTTGAAACTATCGAGTGACGTGCTC
AGTTTGTTGTACCGTCTAGGAATCGTTACCTCTGGCGGCGGCGGCGGTAT
GTAGCGGCAGAAGGAGCGCCCGTCGCCAACCCAGGATCCCGATGTCCCGA
CAAACATTCTGATCTGTTTTCCGGCGTTAACGGGCTCTTACTCTTGGTCC
TTCGTCTTTGCAGGACTGAGACCCCCCACCTCGAGAGGTGCAGCCGAGAT
CTCCGGCGACCTCTTCTGGGCACCGGTACCCTCGTCATCGCCCGTGTGTA
GCGGCAACCCGACACCCCAAACAGGGGAGACTGGGTTCACCGTTGCCAGG
GGCGGAGGCGGGGCCGGCTCTGCGCCGAATGGCCAGATCTCGGGCCGGGT
CTCCTCCGCACCGACACCCGCGTCGTCGCCCGTGTGCAGCGGACACTCGT
CCCCCCAAACAGGGGGGACTGGGTTCGCCGCTGCCAGGGGTGGAGGCGGG
GCCGGCTCTGCGCCGAATGGCCAGATCTCGGGCCGGGTCTCCTCCGCACC
AGCACCCGCGTCGTCGCCCGTGTACAGCGGACACTCGTCACCCCAAACAG
GGGGGACTGGGTTCACCGCTGCCAGGGGCGGAGGCGGGGCCGGCTCTGCG
CCGAATGGCCAGATCTCGGGCCGGGTCTCCTCGGCACCGACACCCGCGTC
GTCGCCCGTGTGCAGCGGACACTCGCCACCCCAAACAGGGGAGACTGGGT
TCGCCGCTGTCAGGGGCGGAGGCGGGGCCGGCTCTGCGCCGAATGGCCAG
ATCTCGGACTGGCTCTTCCCGGCACCAGCACCCGCGTCGAAGCCCGTACG
CAGCGGACACTAGTCACCCCAAACAGGGGAGACTGGGTTCGCCGCCGCCA
GGGGCGGAGGCGGGGCCGGATCTGTGCCGGGTGACACCAGGCAGATCAGG
ATGCCAGAGACGGTGAGTGGAGAAAGCGTTTCCTTGCCAGTTGTTACCCT
GCCTATTTTCGTGGTGGATCAGCCGCCGAACGGGTCTGCTTGCGGCAGAG
GTAACACGGGGAGGCTACCCCGAATCGTCAAAGATCCGGGCGGCGCTTTG
CGAACTCAAGGCACCCCTAGCGAGCTGCATTGCCCCCCTCGCTCCCCTGC
TGGCCTGTCAGTGGTAGTTCGTTCGTTGCTGATGACGTAACACTCGAAAC
AACACGCCTCTTTGTAGAACAGGTATTTAATCGCATAGCTTCCGAAGGAC
ATCTAAAAGTAGTTACCTGGTGCACACCGGTACTCCACACACCCCGTTGC
AAACTCTTTGCTGCGCGTGACATTCGGTGTTAGCCGACCCCTTGATGGTG
CGTCGAATGTCGATGGATCCCGTCGTCGAGCTTGTGCACTATTGTACAGA
CTAAACATGATCCTGACGAATCTCGCCCCCGCGCTCTTGCTGGGACTATG
TTTTCGGAACCCTGTCTTTCTGTCGCCAGGACTCTCTCAAGAACACGACG
GCGGAGTACC

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1142:15905..18464+

>mRNA_Ecto-sp9_F_contig1142.1222.1 ID=mRNA_Ecto-sp9_F_contig1142.1222.1|Name=mRNA_Ecto-sp9_F_contig1142.1222.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1230bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1142:15905..18464+ (Ectocarpus species9 EcSCA_722f female)
ATGGCCAGATCTCGGGCCGGGTCTCCTCCGCACCGACACCCGCGTCGTCG
CCCGTGTGCAGCGGACACTCGTCCCCCCAAACAGGGGGGACTGGGTTCGC
CGCTGCCAGGGGTGGAGGCGGGGCCGGCTCTGCGCCGAATGGCCAGATCT
CGGGCCGGGTCTCCTCCGCACCAGCACCCGCGTCGTCGCCCGTGTACAGC
GGACACTCGTCACCCCAAACAGGGGGGACTGGGTTCACCGCTGCCAGGGG
CGGAGGCGGGGCCGGCTCTGCGCCGAATGGCCAGATCTCGGGCCGGGTCT
CCTCGGCACCGACACCCGCGTCGTCGCCCGTGTGCAGCGGACACTCGCCA
CCCCAAACAGGGGAGACTGGGTTCGCCGCTGTCAGGGGCGGAGGCGGGGC
CGGCTCTGCGCCGAATGGCCAGATCTCGGACTGGCTCTTCCCGGCACCAG
CACCCGCGTCGAAGCCCGTACGCAGCGGACACTAGTCACCCCAAACAGGG
GAGACTGGGTTCGCCGCCGCCAGGGGCGGAGGCGGGGCCGGATCTGTGCC
GGGTGACACCAGGCAGATCAGGATGCCAGAGACGATGGCCAGATCTCGGG
CCGGGTCTCCTCCGCACCGACACCCGCGTCGTCGCCCGTGTGCAGCGGAC
ACTCGTCCCCCCAAACAGGGGGGACTGGGTTCGCCGCTGCCAGGGGTGGA
GGCGGGGCCGGCTCTGCGCCGAATGGCCAGATCTCGGGCCGGGTCTCCTC
CGCACCAGCACCCGCGTCGTCGCCCGTGTACAGCGGACACTCGTCACCCC
AAACAGGGGGGACTGGGTTCACCGCTGCCAGGGGCGGAGGCGGGGCCGGC
TCTGCGCCGAATGGCCAGATCTCGGGCCGGGTCTCCTCGGCACCGACACC
CGCGTCGTCGCCCGTGTGCAGCGGACACTCGCCACCCCAAACAGGGGAGA
CTGGGTTCGCCGCTGTCAGGGGCGGAGGCGGGGCCGGCTCTGCGCCGAAT
GGCCAGATCTCGGACTGGCTCTTCCCGGCACCAGCACCCGCGTCGAAGCC
CGTACGCAGCGGACACTAGTCACCCCAAACAGGGGAGACTGGGTTCGCCG
CCGCCAGGGGCGGAGGCGGGGCCGGATCTGTGCCGGGTGACACCAGGCAG
ATCAGGATGCCAGAGACGGACTCTCTCAAGAACACGACGGCGGAGTACCG
ACTCTCTCAAGAACACGACGGCGGAGTACC