mRNA_Ecto-sp9_F_contig11418.1219.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN4_9PHAE) HSP 1 Score: 217 bits (553), Expect = 1.970e-63 Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 3
Query: 3 SMPMNSAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLLQKTV 344
S+PMN+AEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLLQKTV
Sbjct: 6 SVPMNTAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLLQKTV 119
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Major (facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZT8_9STRA) HSP 1 Score: 117 bits (294), Expect = 3.180e-26 Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 3
Query: 21 AEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGG 314
A + +LK +A+VY TF++YAMSHFSRK YTNVKKQ+ +AGM+ L SR+DTGFM +YAIG F SG +GDR+R +TV+A GL GSA CV+ L G
Sbjct: 13 AMEDPRLKGYRAFVYFMTFVAYAMSHFSRKSYTNVKKQMKTDAGMTTELFSRMDTGFMFAYAIGSFFSGQLGDRLRPTTVVAAGLIGSAACVMALVFG 110
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB5_VAULI) HSP 1 Score: 110 bits (275), Expect = 2.050e-23 Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = 3
Query: 36 KLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLLQKTV 344
K + Q +VY TFI+YAMSHF+RK YT VKKQ+ + A S L SRLDTGFM SYA+G F SG +GDR+ STV+A GL GSA+CV L G LL+K +
Sbjct: 24 KFQNAQKFVYITTFIAYAMSHFARKSYTTVKKQMRMEADFSPELFSRLDTGFMFSYAVGSFFSGYLGDRLHPSTVVASGLVGSALCVFGLVVGIWLDLLKKNM 126
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5U8_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.660e-20 Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 3
Query: 15 NSAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLL 332
NS E+ AKL Q WV+SATF +YAM+H++RK YTNVK L+ AG+ L+ +D+GFM +YA G F++GM+GDR VIAGGL GS +C+ L+ GA+ ++
Sbjct: 32 NSPENVAKLAVYQKWVFSATFFNYAMAHWTRKSYTNVKMSLIA-AGVDPLTLAAMDSGFMFTYAGGSFVTGMLGDRFSPVVVIAGGLLGSTLCLFLIIIGASTSIV 136
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XS52_DIALT) HSP 1 Score: 95.5 bits (236), Expect = 3.050e-18 Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 3
Query: 21 AEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLL----AGGAADH 326
A +AKL+ + V+ TF++YAMSHFSRKCYTNVK LV AG+ K +LS++DT FML+YA+G F+SG +GD + VI GL GS +C+ ++ A G H
Sbjct: 12 AAAAAKLESWKRTVFFITFVNYAMSHFSRKCYTNVKTDLV-KAGVDKMILSQMDTAFMLTYALGSFISGRLGDMFPQNVVIGVGLIGSTLCLGMIQVFEASGVVHH 116
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0T9_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.070e-18 Identity = 42/91 (46.15%), Postives = 67/91 (73.63%), Query Frame = 3
Query: 57 WVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHL 329
WV++ATFI+YAM+H++RK YTNVK +L+ AG++K LS +D+ FM +YA G F++G++GDR + V+ GL GS++C+ + GA+ +
Sbjct: 6 WVFAATFINYAMAHWTRKAYTNVKTELLA-AGLTKITLSSMDSAFMFTYAFGSFVTGILGDRFSPTAVVGIGLMGSSLCLGAMVVGASTSI 95
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P0T3_9EUKA) HSP 1 Score: 94.4 bits (233), Expect = 7.190e-18 Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 3
Query: 12 MNSAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCV 296
+ +D ++ + Q V++ TF++YAMSHFSRKCYTNVK LV ++G+ K +LS++DT FM +YA+G F+SG +GD + VI GL GS +C+
Sbjct: 26 LEGGDDQVRMLKWQKAVFAITFVNYAMSHFSRKCYTNVKTDLV-DSGVDKVILSQMDTAFMFTYAVGSFISGRLGDMFPQNVVIGVGLIGSTLCL 119
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EQ20_9EUKA) HSP 1 Score: 92.0 bits (227), Expect = 4.070e-17 Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3
Query: 24 EDSAKLKRN-QAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCV 296
ED K K Q V++ TF++YAM+HFSRKCYTNVK L+ + G+ K +LS++DT FM +YAIG F+SG +GD + VI GL GS +C+
Sbjct: 11 EDQTKAKAKWQKLVFAITFLNYAMAHFSRKCYTNVKTDLIAS-GVDKIILSQMDTAFMFTYAIGSFISGRLGDTFPQNVVIGVGLLGSTLCL 101
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LK54_9EUKA) HSP 1 Score: 91.3 bits (225), Expect = 8.150e-17 Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 3
Query: 24 EDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCV 296
E + K+K +A V+ TFI+YAMSHFSRKCYTNVK LV +G+ K +LS++DT FM +YAIG F+SG +GD + +I GL GS +C+
Sbjct: 27 ETAQKIKWQRA-VFLITFINYAMSHFSRKCYTNVKTDLV-ESGVDKVILSQMDTAFMFTYAIGSFISGRLGDMFPQNMIIGVGLLGSTLCL 115
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZK41_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 8.660e-17 Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 3
Query: 36 KLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLL 305
+LK Q W + TF Y M+HFSRKCY+ VK+QL G + +LS +DT FM +YA G ++G +GD +TV+A GL GS +C+LL+
Sbjct: 22 RLKLYQPWAFFITFGGYFMAHFSRKCYSTVKEQLETEGGFPEVILSEMDTVFMATYAAGNIINGKLGDTFNPTTVLAVGLFGSGLCLLLI 111 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11418.1219.1 >prot_Ecto-sp9_F_contig11418.1219.1 ID=prot_Ecto-sp9_F_contig11418.1219.1|Name=mRNA_Ecto-sp9_F_contig11418.1219.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=125bp MPMNSAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMback to top mRNA from alignment at Ecto-sp9_F_contig11418:2256..3673- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11418.1219.1 ID=mRNA_Ecto-sp9_F_contig11418.1219.1|Name=mRNA_Ecto-sp9_F_contig11418.1219.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1418bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11418:2256..3673- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11418:2256..3673- >mRNA_Ecto-sp9_F_contig11418.1219.1 ID=mRNA_Ecto-sp9_F_contig11418.1219.1|Name=mRNA_Ecto-sp9_F_contig11418.1219.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11418:2256..3673- (Ectocarpus species9 EcSCA_722f female)back to top |