mRNA_Ecto-sp9_F_contig11418.1219.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11418.1219.1
Unique NamemRNA_Ecto-sp9_F_contig11418.1219.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN4_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.970e-63
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 3
Query:    3 SMPMNSAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLLQKTV 344
            S+PMN+AEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLLQKTV
Sbjct:    6 SVPMNTAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLLQKTV 119          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Major (facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZT8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.180e-26
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   21 AEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGG 314
            A +  +LK  +A+VY  TF++YAMSHFSRK YTNVKKQ+  +AGM+  L SR+DTGFM +YAIG F SG +GDR+R +TV+A GL GSA CV+ L  G
Sbjct:   13 AMEDPRLKGYRAFVYFMTFVAYAMSHFSRKSYTNVKKQMKTDAGMTTELFSRMDTGFMFAYAIGSFFSGQLGDRLRPTTVVAAGLIGSAACVMALVFG 110          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB5_VAULI)

HSP 1 Score: 110 bits (275), Expect = 2.050e-23
Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = 3
Query:   36 KLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLLQKTV 344
            K +  Q +VY  TFI+YAMSHF+RK YT VKKQ+ + A  S  L SRLDTGFM SYA+G F SG +GDR+  STV+A GL GSA+CV  L  G    LL+K +
Sbjct:   24 KFQNAQKFVYITTFIAYAMSHFARKSYTTVKKQMRMEADFSPELFSRLDTGFMFSYAVGSFFSGYLGDRLHPSTVVASGLVGSALCVFGLVVGIWLDLLKKNM 126          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5U8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.660e-20
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 3
Query:   15 NSAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHLL 332
            NS E+ AKL   Q WV+SATF +YAM+H++RK YTNVK  L+  AG+    L+ +D+GFM +YA G F++GM+GDR     VIAGGL GS +C+ L+  GA+  ++
Sbjct:   32 NSPENVAKLAVYQKWVFSATFFNYAMAHWTRKSYTNVKMSLIA-AGVDPLTLAAMDSGFMFTYAGGSFVTGMLGDRFSPVVVIAGGLLGSTLCLFLIIIGASTSIV 136          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XS52_DIALT)

HSP 1 Score: 95.5 bits (236), Expect = 3.050e-18
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 3
Query:   21 AEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLL----AGGAADH 326
            A  +AKL+  +  V+  TF++YAMSHFSRKCYTNVK  LV  AG+ K +LS++DT FML+YA+G F+SG +GD    + VI  GL GS +C+ ++    A G   H
Sbjct:   12 AAAAAKLESWKRTVFFITFVNYAMSHFSRKCYTNVKTDLV-KAGVDKMILSQMDTAFMLTYALGSFISGRLGDMFPQNVVIGVGLIGSTLCLGMIQVFEASGVVHH 116          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0T9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.070e-18
Identity = 42/91 (46.15%), Postives = 67/91 (73.63%), Query Frame = 3
Query:   57 WVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLLAGGAADHL 329
            WV++ATFI+YAM+H++RK YTNVK +L+  AG++K  LS +D+ FM +YA G F++G++GDR   + V+  GL GS++C+  +  GA+  +
Sbjct:    6 WVFAATFINYAMAHWTRKAYTNVKTELLA-AGLTKITLSSMDSAFMFTYAFGSFVTGILGDRFSPTAVVGIGLMGSSLCLGAMVVGASTSI 95          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P0T3_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 7.190e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   12 MNSAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCV 296
            +   +D  ++ + Q  V++ TF++YAMSHFSRKCYTNVK  LV ++G+ K +LS++DT FM +YA+G F+SG +GD    + VI  GL GS +C+
Sbjct:   26 LEGGDDQVRMLKWQKAVFAITFVNYAMSHFSRKCYTNVKTDLV-DSGVDKVILSQMDTAFMFTYAVGSFISGRLGDMFPQNVVIGVGLIGSTLCL 119          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EQ20_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 4.070e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3
Query:   24 EDSAKLKRN-QAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCV 296
            ED  K K   Q  V++ TF++YAM+HFSRKCYTNVK  L+ + G+ K +LS++DT FM +YAIG F+SG +GD    + VI  GL GS +C+
Sbjct:   11 EDQTKAKAKWQKLVFAITFLNYAMAHFSRKCYTNVKTDLIAS-GVDKIILSQMDTAFMFTYAIGSFISGRLGDTFPQNVVIGVGLLGSTLCL 101          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LK54_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 8.150e-17
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 3
Query:   24 EDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCV 296
            E + K+K  +A V+  TFI+YAMSHFSRKCYTNVK  LV  +G+ K +LS++DT FM +YAIG F+SG +GD    + +I  GL GS +C+
Sbjct:   27 ETAQKIKWQRA-VFLITFINYAMSHFSRKCYTNVKTDLV-ESGVDKVILSQMDTAFMFTYAIGSFISGRLGDMFPQNMIIGVGLLGSTLCL 115          
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZK41_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.660e-17
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   36 KLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLL 305
            +LK  Q W +  TF  Y M+HFSRKCY+ VK+QL    G  + +LS +DT FM +YA G  ++G +GD    +TV+A GL GS +C+LL+
Sbjct:   22 RLKLYQPWAFFITFGGYFMAHFSRKCYSTVKEQLETEGGFPEVILSEMDTVFMATYAAGNIINGKLGDTFNPTTVLAVGLFGSGLCLLLI 111          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11418.1219.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MFS1.970e-6398.25domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Major3.180e-2659.18facilitator superfamily domain-containing protein ... [more]
MFS2.050e-2356.31domain-containing protein n=1 Tax=Vaucheria litore... [more]
Hypothetical2.660e-2050.00protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
MFS3.050e-1849.06domain-containing protein n=1 Tax=Diacronema luthe... [more]
Hypothetical3.070e-1846.15protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Hypothetical7.190e-1847.37protein n=2 Tax=Calcidiscus leptoporus TaxID=12754... [more]
Hypothetical4.070e-1751.09protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Hypothetical8.150e-1752.75protein n=1 Tax=Coccolithus braarudii TaxID=221442... [more]
Hypothetical8.660e-1746.67protein (Fragment) n=1 Tax=Craspedostauros austral... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11418contigEcto-sp9_F_contig11418:2256..3673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue4.6e-16
Seed eggNOG ortholog35128.Thaps22565
KEGG koko:K03447,ko:K13783
KEGG TC2.A.1.4
EggNOG free text desc.Major Facilitator Superfamily
EggNOG OGs2XAF1@2836,COG0477@1,KOG2533@2759
COG Functional cat.G
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons4
Model size981
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11418.1219.1prot_Ecto-sp9_F_contig11418.1219.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11418 2891..3668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928391.553796-UTR-Ecto-sp9_F_contig11418:2255..27621622928391.553796-UTR-Ecto-sp9_F_contig11418:2255..2762Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11418 2256..2762 -
1692277856.032809-UTR-Ecto-sp9_F_contig11418:2255..27621692277856.032809-UTR-Ecto-sp9_F_contig11418:2255..2762Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11418 2256..2762 -
1622928391.5655603-UTR-Ecto-sp9_F_contig11418:2796..28901622928391.5655603-UTR-Ecto-sp9_F_contig11418:2796..2890Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11418 2797..2890 -
1692277856.0535562-UTR-Ecto-sp9_F_contig11418:2796..28901692277856.0535562-UTR-Ecto-sp9_F_contig11418:2796..2890Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11418 2797..2890 -
1622928391.612548-UTR-Ecto-sp9_F_contig11418:3668..36731622928391.612548-UTR-Ecto-sp9_F_contig11418:3668..3673Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11418 3669..3673 -
1692277856.0956652-UTR-Ecto-sp9_F_contig11418:3668..36731692277856.0956652-UTR-Ecto-sp9_F_contig11418:3668..3673Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11418 3669..3673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928391.57588-CDS-Ecto-sp9_F_contig11418:2890..30831622928391.57588-CDS-Ecto-sp9_F_contig11418:2890..3083Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11418 2891..3083 -
1692277856.0678632-CDS-Ecto-sp9_F_contig11418:2890..30831692277856.0678632-CDS-Ecto-sp9_F_contig11418:2890..3083Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11418 2891..3083 -
1622928391.5877743-CDS-Ecto-sp9_F_contig11418:3254..33881622928391.5877743-CDS-Ecto-sp9_F_contig11418:3254..3388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11418 3255..3388 -
1692277856.0770674-CDS-Ecto-sp9_F_contig11418:3254..33881692277856.0770674-CDS-Ecto-sp9_F_contig11418:3254..3388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11418 3255..3388 -
1622928391.6002398-CDS-Ecto-sp9_F_contig11418:3620..36681622928391.6002398-CDS-Ecto-sp9_F_contig11418:3620..3668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11418 3621..3668 -
1692277856.0860076-CDS-Ecto-sp9_F_contig11418:3620..36681692277856.0860076-CDS-Ecto-sp9_F_contig11418:3620..3668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11418 3621..3668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11418.1219.1

>prot_Ecto-sp9_F_contig11418.1219.1 ID=prot_Ecto-sp9_F_contig11418.1219.1|Name=mRNA_Ecto-sp9_F_contig11418.1219.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=125bp
MPMNSAEDSAKLKRNQAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGM
SKSLLSRLDTGFMLSYAIGGFLSGMVGDRMRMSTVIAGGLAGSAVCVLLL
AGGAADHLLQKTVRRAARQQSCRR*
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mRNA from alignment at Ecto-sp9_F_contig11418:2256..3673-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11418.1219.1 ID=mRNA_Ecto-sp9_F_contig11418.1219.1|Name=mRNA_Ecto-sp9_F_contig11418.1219.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1418bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11418:2256..3673- (Ectocarpus species9 EcSCA_722f female)
AGAGCATGCCGATGAACAGCGCCGAGGACTCGGCCAAGCTGAAGCGCAAC CAGGTGAGAGTCGCAAGTGATTTGGGACCCGAAATTCTTGCTTTGGGTGG ATCTGGGAGAAAAAAATCACACATCATTTTTCGAATCACACCATTCGATG CATGCGCGTGCCTCGCCCCTGACCATGCGTGCGTGTATGTTGCTCTTCGG CCAGCGCCCTGGGTTTCGGGCCGGACGTCTATTGATCTCACTAAGGCCGT CCCCTGTTCCGCGCTCTCGCGTACGTGCGCCCCAGGCATGGGTCTACTCT GCTACCTTCATCTCGTACGCTATGTCTCACTTCTCGAGGAAGTGCTACAC GAACGTGAAGAAGCAGCTGGTCGTGAACGCAGGCATGAGCAAGTCTTTGC TCAGCCGCCTCGACACCGGGTACGTTCCTTCCCCCAAATGCATTTTTACT CATTCGCCCACAGCCCTCGATGATGCTGGCCTCTGCGCGAAAAGACAAGG CGTAAAGAGATCGCTTCGTGTTGTTTGATTTATCGAAATACACCGGGGAA CTGTGCTGTCTGTCCCGTCCTTCGACGCTTGTTTCATCAGGTTCATGCTG AGCTACGCGATCGGAGGCTTCCTGAGCGGCATGGTCGGCGACAGGATGCG CATGTCCACGGTTATTGCGGGGGGGCTCGCCGGGTCTGCGGTGTGCGTGC TTCTGCTGGCTGGGGGAGCAGCTGACCACTTGCTTCAGAAGACGGTGAGG CGTGCAGCCAGACAGCAGTCCTGCAGGCGTTAGATCAACGCATGTGCGGC ATGGGAGTCGTGCCGAAATGCTCAAATGCGCGATCCTCATCACGACTCAC GTTAAGGGGGGGCAGCCAACCTAGCGTAATCTACACAAGATAACACACCC CCGCTGTTACATTTTTGGCTAAAAATATCATCACCGGGTGTGGTATCCTT GGGGGGGTGTGGTATCTTATGTAGCCCGGGTGATAACGCGCAGCTCGCAG GAGCCGTAAAGCGTGTGATAAACCAGGGGGTGTGATAGCACGTCCGAACA CCCACAGGGTGCGGTTATGGGTGTGATAATGAGGGGGCGTGACAATACTG CTGGTAGAGTTGAAGCGCTGCTGCCGCACACTTGGAGAGTGCGGTCTTGC GGGGATGTGATAGCAATGCCTGAACAAACACTTCCCGCTGCCCCGCTTCG GAAGGTACCTAGGTAATGTGGTAGAAAGGGGATGTGGTATGAAAGAACGA GCCGACCTGTTGTGGCGCCTGTACTGCTGCGGTCGAAGCAGTTATGGAAG AAGCGGAGGTACTTGCGGCAGCCTTCTGCTCTCCCTGCACGTTCATGTTG TTGGAGGTCTCCGTGCGGGGTGGTTTCCCCGCACGTAGATGTTTGGTGTT GTGTGTAGTGCCCACGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11418:2256..3673-

>mRNA_Ecto-sp9_F_contig11418.1219.1 ID=mRNA_Ecto-sp9_F_contig11418.1219.1|Name=mRNA_Ecto-sp9_F_contig11418.1219.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11418:2256..3673- (Ectocarpus species9 EcSCA_722f female)
ATGCCGATGAACAGCGCCGAGGACTCGGCCAAGCTGAAGCGCAACCAGAT
GCCGATGAACAGCGCCGAGGACTCGGCCAAGCTGAAGCGCAACCAGGCAT
GGGTCTACTCTGCTACCTTCATCTCGTACGCTATGTCTCACTTCTCGAGG
AAGTGCTACACGAACGTGAAGAAGCAGCTGGTCGTGAACGCAGGCATGAG
CAAGTCTTTGCTCAGCCGCCTCGACACCGGGCATGGGTCTACTCTGCTAC
CTTCATCTCGTACGCTATGTCTCACTTCTCGAGGAAGTGCTACACGAACG
TGAAGAAGCAGCTGGTCGTGAACGCAGGCATGAGCAAGTCTTTGCTCAGC
CGCCTCGACACCGGGTTCATGCTGAGCTACGCGATCGGAGGCTTCCTGAG
CGGCATGGTCGGCGACAGGATGCGCATGTCCACGGTTATTGCGGGGGGGC
TCGCCGGGTCTGCGGTGTGCGTGCTTCTGCTGGCTGGGGGAGCAGCTGAC
CACTTGCTTCAGAAGACGGTGAGGCGTGCAGCCAGACAGCAGTCCTGCAG
GCGTTAGGTTCATGCTGAGCTACGCGATCGGAGGCTTCCTGAGCGGCATG
GTCGGCGACAGGATGCGCATGTCCACGGTTATTGCGGGGGGGCTCGCCGG
GTCTGCGGTGTGCGTGCTTCTGCTGGCTGGGGGAGCAGCTGACCACTTGC
TTCAGAAGACGGTGAGGCGTGCAGCCAGACAGCAGTCCTGCAGGCGTTAG
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