mRNA_Ecto-sp9_F_contig11413.1215.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11413.1215.1
Unique NamemRNA_Ecto-sp9_F_contig11413.1215.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11413.1215.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDU4_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 6.910e-79
Identity = 135/143 (94.41%), Postives = 137/143 (95.80%), Query Frame = 2 
Query:    2 FAAPSPTGAPRTLPPAALAAAAVIREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEHQQQ---PASPDETGKGAMHPLMASKRGFRSISSPALTQFAHYAEQLPRLQTPPFKRRKSVASFV 421
            FAAPSPTGAPRTLPPAALAAAAVIREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGE Q     PASP+ETGKGAMHPLMASKRGFRSISSPALTQFA+YAEQLPRLQTPPFKRRKSVASFV
Sbjct:  478 FAAPSPTGAPRTLPPAALAAAAVIREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQXXXXXPASPEETGKGAMHPLMASKRGFRSISSPALTQFANYAEQLPRLQTPPFKRRKSVASFV 620
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BLAST of mRNA_Ecto-sp9_F_contig11413.1215.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR84_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 7.790e-66
Identity = 112/118 (94.92%), Postives = 112/118 (94.92%), Query Frame = 2 
Query:   77 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEHQQ---QPASPDETGKGAMHPLMASKRGFRSISSPALTQFAHYAEQLPRLQTPPFKRRKSVASFV 421
            EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGE QQ   QPASPD TGKG MHPLMASKRGFRSISSPALTQFAHYAEQLPRLQTPPFKRRKSVASFV
Sbjct:  351 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPDATGKGGMHPLMASKRGFRSISSPALTQFAHYAEQLPRLQTPPFKRRKSVASFV 468
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11413.1215.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.910e-7994.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.790e-6694.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11413contigEcto-sp9_F_contig11413:221..1846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog2880.D8LR84
Preferred nameDCAF7
KEGG koko:K11805
GOsGO:0000151,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0008150,GO:0008152,GO:0008361,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010564,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0016043,GO:0016363,GO:0016604,GO:0017016,GO:0017048,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030274,GO:0030334,GO:0030336,GO:0030516,GO:0031267,GO:0031323,GO:0031326,GO:0031344,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032991,GO:0033262,GO:0034399,GO:0035330,GO:0035331,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042692,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045445,GO:0045595,GO:0045664,GO:0045806,GO:0045927,GO:0048365,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048627,GO:0048638,GO:0048699,GO:0048731,GO:0048747,GO:0048856,GO:0048869,GO:0050764,GO:0050765,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051052,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051239,GO:0051270,GO:0051271,GO:0051336,GO:0051726,GO:0051960,GO:0055001,GO:0055002,GO:0060099,GO:0060101,GO:0060255,GO:0060284,GO:0060627,GO:0061061,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0090329,GO:0120035,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903463,GO:1905153,GO:1905154,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000146
EggNOG free text desc.epidermal cell fate specification
EggNOG OGsKOG0290@1,KOG0290@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-06_003520.3
Exons2
Model size637
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11413.1215.1prot_Ecto-sp9_F_contig11413.1215.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11413 1490..1633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928391.391833-UTR-Ecto-sp9_F_contig11413:220..4551622928391.391833-UTR-Ecto-sp9_F_contig11413:220..455Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11413 221..455 +
1692277855.9527962-UTR-Ecto-sp9_F_contig11413:220..4551692277855.9527962-UTR-Ecto-sp9_F_contig11413:220..455Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11413 221..455 +
1622928391.4064734-UTR-Ecto-sp9_F_contig11413:1444..14891622928391.4064734-UTR-Ecto-sp9_F_contig11413:1444..1489Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11413 1445..1489 +
1692277855.9617999-UTR-Ecto-sp9_F_contig11413:1444..14891692277855.9617999-UTR-Ecto-sp9_F_contig11413:1444..1489Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11413 1445..1489 +
1622928391.4318812-UTR-Ecto-sp9_F_contig11413:1633..18461622928391.4318812-UTR-Ecto-sp9_F_contig11413:1633..1846Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11413 1634..1846 +
1692277855.9765275-UTR-Ecto-sp9_F_contig11413:1633..18461692277855.9765275-UTR-Ecto-sp9_F_contig11413:1633..1846Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11413 1634..1846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928391.41961-CDS-Ecto-sp9_F_contig11413:1489..16331622928391.41961-CDS-Ecto-sp9_F_contig11413:1489..1633Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11413 1490..1633 +
1692277855.969021-CDS-Ecto-sp9_F_contig11413:1489..16331692277855.969021-CDS-Ecto-sp9_F_contig11413:1489..1633Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11413 1490..1633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11413.1215.1

>prot_Ecto-sp9_F_contig11413.1215.1 ID=prot_Ecto-sp9_F_contig11413.1215.1|Name=mRNA_Ecto-sp9_F_contig11413.1215.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=48bp
MHPLMASKRGFRSISSPALTQFAHYAEQLPRLQTPPFKRRKSVASFV*
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mRNA from alignment at Ecto-sp9_F_contig11413:221..1846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11413.1215.1 ID=mRNA_Ecto-sp9_F_contig11413.1215.1|Name=mRNA_Ecto-sp9_F_contig11413.1215.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1626bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11413:221..1846+ (Ectocarpus species9 EcSCA_722f female)
GTTCGCCGCGCCGTCGCCTACGGGGGCCCCGCGGACTCTACCCCCGGCGG
CGTTGGCGGCCGCGGCCGTGATTAGGGAGGGGAGCGGCAGCGGCGCACGC
TCCCCCACTTGGCCGCTTCCGCGAGTTATCCCAGAGGGGTCGGAGATCTC
TGACCAGGACGCCGGCGGCTTGCTGATCGACTTCTTCAAGTCGGTGCACG
ACAAGGTCAAGACTGCTTCCGACGAGCTTGGCGAGGTATGTGTGTATGTA
CGGAAGGGTGTAAGTCGTGTTTTGACCGCTCATGGCCGGCCGCAGAGCGG
CATGTTGAGTCTTTCTGTGTTTGTATTTTTGTTTCCTATTGTTTAGTCGT
GATGTTGTACTTGTAGATAGTTTTCCCTTCCGCATTGTGCTTCGACATTT
CTTGATTCTGATGCTCTCTGTTTTACCTTGGGCGGCCGCGCTCAAAATCC
CCTTCCTGCAACCTCTAGTTGCTTGCTTGCATAGCAGCGCCTTCTTTCCT
CCGAAACGCTCATTTTCTCCAACCGCAACCACGAGAAACACGCACACAGT
AAACAAGTTCTCGGCAGTGGCGCAAGATTGCGAGAGTCAAACCGCGCACA
CCCTCAGACCGACTTTCACGGCTCACGCACGACCAATGTAGGGTGCCAAC
GCCGACGAAAAAGTGTTTTTTGGAACGACAATAAATACGTTGTAGAGATA
GCTCTTTCCTTGCGTGTGTCGGTGAGCTTTTATTGGTATGTTCTCTTCGG
GCTGCGGAGCAATCGATGTTTGAAGAAGCGGCTACGGTACGGTCGGAATT
TTACAGTGTTCAGCACCGCTGCATGTCTACACCCCCCTTTTCTGGCCATC
TACATGCGGCAGATTCGTTTGGCATGCGTGACCCGCGAACTTCGGTGGGT
GTCCACATTTCGTCCGCCATACGCCCCATGTCCGCGGTAAACGGGCTGTG
TTGGCGGGTTGTTTTGTCGGAATGTGTTGAAAGTACCGTAGGTCATACGC
ACACTGTATGTGAGTGCCGGCTTCCGTCATTGTCCCGTCCTACAATATTG
TAGAAGCCGAAAATCGAAACCGTTAAACTAGTCAGTGCTGATTATGTGGA
TAGTCTAATGGTGTGATTTCGCCTACATGTACCGTTCTCTCCCGCACATG
AAACACGCCAACCCTACATTGTGCAACACCTTCCTTCTCGCTGCATGCAC
CCCGCCCGTGTTCGGCACCAGCAGCACCAGCAGCAGCCTGCGAGCCCTGA
CGAGACGGGCAAGGGAGCGATGCACCCGCTCATGGCAAGCAAGCGCGGCT
TTAGGTCGATCTCGTCTCCGGCGCTAACCCAGTTCGCGCACTACGCGGAA
CAGTTGCCGAGGCTCCAGACCCCCCCCTTCAAGCGGAGGAAAAGCGTCGC
GAGCTTTGTTTGAAGAAGTGATGCCGCCGCCGCCGCCGCCGCTGCACACC
AGCGGGTTTACCTTTATGGGGAAGGGGGGCACTTTTTAACCCTGTTCAGA
GGAATGACGAAGAGTTTGTGTGTGTTCGGTATCTGTGTGTGGCAGGGTAC
GTTTACACACATGAGAGAGCGAGTTGAAGGTCGGGGAGAAAAGGGGTCCC
GATTTTTGTTTTCATGTGAACCAAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11413:221..1846+

>mRNA_Ecto-sp9_F_contig11413.1215.1 ID=mRNA_Ecto-sp9_F_contig11413.1215.1|Name=mRNA_Ecto-sp9_F_contig11413.1215.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11413:221..1846+ (Ectocarpus species9 EcSCA_722f female)
ATGCACCCGCTCATGGCAAGCAAGCGCGGCTTTAGGTCGATCTCGTCTCC
GGCGCTAACCCAGTTCGCGCACTACGCGGAACAGTTGCCGAGGCTCCAGA
CCCCCCCCTTCAAGCGGAGGAAAAGCGTCGCGAGCTTTGTTTGAATGCAC
CCGCTCATGGCAAGCAAGCGCGGCTTTAGGTCGATCTCGTCTCCGGCGCT
AACCCAGTTCGCGCACTACGCGGAACAGTTGCCGAGGCTCCAGACCCCCC
CCTTCAAGCGGAGGAAAAGCGTCGCGAGCTTTGTTTGA
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