mRNA_Ecto-sp9_F_contig1141.1213.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1141.1213.1
Unique NamemRNA_Ecto-sp9_F_contig1141.1213.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI)

HSP 1 Score: 607 bits (1564), Expect = 1.650e-217
Identity = 307/323 (95.05%), Postives = 309/323 (95.67%), Query Frame = 2
Query:   47 MRSGAIAVLAFVRAVLLVPNVTAYIPTSTSTSIAASVAPPHRCSTRCRARSSSTIGDSTASDPVGGVGIEPAAVAKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDEDGSS 1015
            MRSG IAVLAFVRAVLLVPNVTAYIPTSTSTS +A +APPHRCSTRCRARSSSTIG STA DPVGG GIEPA  AKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK     VPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDED SS
Sbjct:    1 MRSGVIAVLAFVRAVLLVPNVTAYIPTSTSTSKSAWIAPPHRCSTRCRARSSSTIGGSTALDPVGGAGIEPADAAKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK-----VPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDEDDSS 318          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: PROTEASOME_ALPHA_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 2.360e-129
Identity = 215/271 (79.34%), Postives = 219/271 (80.81%), Query Frame = 2
Query:   47 MRSGAIAVLAFVRAVLLVPNVTAYIPTSTSTSIAASVAPPHRCSTRCRARSSSTIGDSTASDPVGGVGIEPAAVAKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 859
            M+SGAIA LAF  AVLLVP VTAYI TSTSTSI+A VAPPHRCSTRCRARSSSTIG STASD VGG GIEPA  AKPPLKVIRGRAGPT ATPTYDDTRPLDRILLGLFRSKLAEEVG DGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFP+WLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLND+E                                       VPTEEFFAKDMGLALEMTPNYEDFSCQ
Sbjct:    1 MKSGAIAPLAFFCAVLLVPKVTAYILTSTSTSISALVAPPHRCSTRCRARSSSTIGGSTASDSVGGAGIEPADAAKPPLKVIRGRAGPTAATPTYDDTRPLDRILLGLFRSKLAEEVGEDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPAWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDVE---------------------------------------VPTEEFFAKDMGLALEMTPNYEDFSCQ 232          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA)

HSP 1 Score: 285 bits (730), Expect = 1.830e-92
Identity = 135/218 (61.93%), Postives = 171/218 (78.44%), Query Frame = 2
Query:  356 ILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEK--FPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDE 1003
            +LLGLFR KLA E+  DG   +PGY GL++MI+ LN+   +P+   TQ+A+R+VL+SLFP WLP +FAVMFSKPFP FS R+NAWVTLVASQWLMGPSK+ND+EID G +GVGHGLLV+RCR+LE AGCASVC+NTCK     +PT+EFF KDMGL L+MTP+Y+DFSCQFSF K PL  + DE F VACFEQCP++ + ++        CH++ ++E
Sbjct:    1 MLLGLFRKKLAAELQYDGS--DPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCK-----IPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKR-------LCHKVGLEE 204          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO)

HSP 1 Score: 271 bits (692), Expect = 6.810e-86
Identity = 125/215 (58.14%), Postives = 161/215 (74.88%), Query Frame = 2
Query:  302 AGPTDATPTYDD--TRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR 940
            AGPTD  P+Y D  ++P++ +++ LFR K+   +G D + +  GYD ++D+ + LN KF +  +TQEA+R +L +LFPSWLP +F VMFSKPFP FS RLNA  T +  QWLMGP K+ND+EID G VG GHG+LVERCR+LE AGCASVC+N+CK     +PT+ FF+KDMGL L MTPNYEDFSCQF+F KTP+  +MDEAF   CF QCPS+
Sbjct:   42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELY--GYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVEIDGGIVGKGHGVLVERCRYLEQAGCASVCINSCK-----IPTQTFFSKDMGLQLTMTPNYEDFSCQFAFGKTPMLAEMDEAFTTPCFRQCPSK 249          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: Predicted (protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE)

HSP 1 Score: 266 bits (680), Expect = 6.700e-84
Identity = 130/235 (55.32%), Postives = 161/235 (68.51%), Query Frame = 2
Query:  299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR-------GALRQPNQPAVA 976
            +AGP DA P Y   D++PL+ I++ LFR K+ E +G D      GYD ++D+ + LN KF +  +TQEA+R +L +LFPSWLP +F VMFS+P P FS RLNA  T +  QWLMGP K+ND+EID G VG GHG+LVERCR+LE AGCASVC+N+CK     VPT+ FF KDMGL L MTPNY+DFSCQFSF KTP   D D AF   CF QCPS+       G +  P+ P  A
Sbjct:   50 QAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKL--SGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVEIDGGKVGTGHGVLVERCRYLEQAGCASVCINSCK-----VPTQSFFEKDMGLPLTMTPNYDDFSCQFSFGKTPDPVDRDPAFATPCFTQCPSKRSRTPVCGGIELPSMPGAA 277          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO)

HSP 1 Score: 264 bits (674), Expect = 1.350e-83
Identity = 121/218 (55.50%), Postives = 159/218 (72.94%), Query Frame = 2
Query:  299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGA 946
            +AGP +  P Y   D++PL+++++ LFR K+   +G D      GY+ ++D+ + LN  +   R+ Q  +R++LKSLFPSWLP +FAVMFSKP P FS +LNA  T +  QWLMGP K+ND+E+DDG+VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNYEDFSCQF+F K PL + +DEAF   CF+QCPSR A
Sbjct:    1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQL--SGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVELDDGSVGQGMGVLVERCRYLEQAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQFTFGKAPLPQQLDEAFSTPCFQQCPSRAA 211          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC)

HSP 1 Score: 261 bits (667), Expect = 1.340e-82
Identity = 122/227 (53.74%), Postives = 159/227 (70.04%), Query Frame = 2
Query:  299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAV 973
            +AGP    P+Y+  D++PL+R ++ LFR K+   +G + D  + GYD ++D+ ++LN K  + R TQ  +R++L SLFPSWLP +F VMFSKP P  S +LNAWVT++  QWLMGP K+ND+E+D G +G G G+LVERCR+LE  GCASVC+N+CK     +PT+EFFAKDMGL L MTPNYEDFSCQFSF  TP    +DEAF   CF QCPS+   R    P  
Sbjct:    7 KAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSD--KEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVELDGGRIGSGQGVLVERCRYLEETGCASVCLNSCK-----IPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPAAIDEAFATPCFSQCPSKQRHRGDRCPGA 226          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO)

HSP 1 Score: 262 bits (670), Expect = 3.270e-82
Identity = 129/235 (54.89%), Postives = 162/235 (68.94%), Query Frame = 2
Query:  299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR-------GALRQPNQPAVA 976
            +AGP    P+Y   D +PL+R+++ LFR K+ E +G D      GY  ++D+ + LN ++ + R TQ A+RR+L SLFPSWLP +F VMFS P PAFS RLNA  T +  QWLMGP K+ND+E+D G VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNYEDFSCQF+F KTPL +  DEAF   CF QCPS+       GA R  + P VA
Sbjct:   64 QAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQL--QGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVELDSGEVGSGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQFAFGKTPLPQSQDEAFSTPCFTQCPSKKRTFSDGGAGRPGDCPNVA 291          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO)

HSP 1 Score: 257 bits (657), Expect = 7.850e-80
Identity = 121/216 (56.02%), Postives = 153/216 (70.83%), Query Frame = 2
Query:  299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR 940
            +AGP  A P Y   D +PL+R+++ LFR K+AE +G D      GY  ++D+ + LN ++P+ R TQ  +R +L SLFP WLP +F  MFS+P PA S RLNA+ T +  QWLMGP K+ND+EID G VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNY+DFSCQF+F KTP  +  DEAF   CF QCPSR
Sbjct:   21 QAGPAAAAPDYAGVDAQPLNRVVMALFRRKMAEAIGSDSQL--QGYPAIIDLTRRLNRQYPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVEIDGGQVGAGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYDDFSCQFAFGKTPQPQAEDEAFSTPCFTQCPSR 229          
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO)

HSP 1 Score: 259 bits (661), Expect = 1.410e-79
Identity = 122/213 (57.28%), Postives = 156/213 (73.24%), Query Frame = 2
Query:  320 TPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALR 952
            TP+Y   D +PL++I++ LFR K+   VG D      GYD ++D+ + LN KF +  +TQEA+R +L +LFPSWLP +F VMF++P P  S R+NA  T +  QWLMGP K+ND+E DDGTVG GHG+LVERCR+LE AGCA+VC+N+CK     VPT+ FFAKDMGLAL MTPNY+DFSCQF+F KTPL    DEA+  +CF QCPS+ A R
Sbjct:  171 TPSYAAIDVQPLNKIVMALFRRKMVAAVGSDSPL--SGYDAIIDLTRRLNNKFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVETDDGTVGEGHGVLVERCRYLEQAGCAAVCINSCK-----VPTQSFFAKDMGLALTMTPNYDDFSCQFAFGKTPLPVSADEAYTTSCFAQCPSKKARR 376          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D27-like_C1.650e-21795.05domain-containing protein n=1 Tax=Ectocarpus silic... [more]
PROTEASOME_ALPHA_12.360e-12979.34domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
D27-like_C1.830e-9261.93domain-containing protein n=1 Tax=Tribonema minus ... [more]
D27-like_C6.810e-8658.14domain-containing protein n=2 Tax=Volvox africanus... [more]
Predicted6.700e-8455.32protein n=2 Tax=Chlamydomonas reinhardtii TaxID=30... [more]
D27-like_C1.350e-8355.50domain-containing protein n=1 Tax=Scenedesmus sp. ... [more]
D27-like_C1.340e-8253.74domain-containing protein n=1 Tax=Coccomyxa subell... [more]
D27-like_C3.270e-8254.89domain-containing protein n=1 Tax=Monoraphidium ne... [more]
D27-like_C7.850e-8056.02domain-containing protein n=1 Tax=Raphidocelis sub... [more]
D27-like_C1.410e-7957.28domain-containing protein n=1 Tax=Tetrabaena socia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1141contigEcto-sp9_F_contig1141:7086..11205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score608.2
Seed ortholog evalue2.2e-171
Seed eggNOG ortholog2880.D8LEW1
EggNOG free text desc.Domain of unknown function (DUF4033)
EggNOG OGs28YJ7@1,2R5D2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-21_005770.1
Exons6
Model size1191
Cds size972
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1141.1213.1prot_Ecto-sp9_F_contig1141.1213.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1141 7259..11159 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928389.5511985-UTR-Ecto-sp9_F_contig1141:7085..72581622928389.5511985-UTR-Ecto-sp9_F_contig1141:7085..7258Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1141 7086..7258 -
1692277855.7688427-UTR-Ecto-sp9_F_contig1141:7085..72581692277855.7688427-UTR-Ecto-sp9_F_contig1141:7085..7258Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1141 7086..7258 -
1622928389.6456573-UTR-Ecto-sp9_F_contig1141:11159..112051622928389.6456573-UTR-Ecto-sp9_F_contig1141:11159..11205Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1141 11160..11205 -
1692277855.8343728-UTR-Ecto-sp9_F_contig1141:11159..112051692277855.8343728-UTR-Ecto-sp9_F_contig1141:11159..11205Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1141 11160..11205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928389.5649128-CDS-Ecto-sp9_F_contig1141:7258..74171622928389.5649128-CDS-Ecto-sp9_F_contig1141:7258..7417Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 7259..7417 -
1692277855.7802489-CDS-Ecto-sp9_F_contig1141:7258..74171692277855.7802489-CDS-Ecto-sp9_F_contig1141:7258..7417Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 7259..7417 -
1622928389.5782354-CDS-Ecto-sp9_F_contig1141:7914..79951622928389.5782354-CDS-Ecto-sp9_F_contig1141:7914..7995Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 7915..7995 -
1692277855.7919343-CDS-Ecto-sp9_F_contig1141:7914..79951692277855.7919343-CDS-Ecto-sp9_F_contig1141:7914..7995Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 7915..7995 -
1622928389.590413-CDS-Ecto-sp9_F_contig1141:8356..84731622928389.590413-CDS-Ecto-sp9_F_contig1141:8356..8473Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 8357..8473 -
1692277855.8007357-CDS-Ecto-sp9_F_contig1141:8356..84731692277855.8007357-CDS-Ecto-sp9_F_contig1141:8356..8473Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 8357..8473 -
1622928389.6016936-CDS-Ecto-sp9_F_contig1141:8792..89491622928389.6016936-CDS-Ecto-sp9_F_contig1141:8792..8949Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 8793..8949 -
1692277855.808582-CDS-Ecto-sp9_F_contig1141:8792..89491692277855.808582-CDS-Ecto-sp9_F_contig1141:8792..8949Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 8793..8949 -
1622928389.6171803-CDS-Ecto-sp9_F_contig1141:9355..95731622928389.6171803-CDS-Ecto-sp9_F_contig1141:9355..9573Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 9356..9573 -
1692277855.8164074-CDS-Ecto-sp9_F_contig1141:9355..95731692277855.8164074-CDS-Ecto-sp9_F_contig1141:9355..9573Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 9356..9573 -
1622928389.6310358-CDS-Ecto-sp9_F_contig1141:10919..111591622928389.6310358-CDS-Ecto-sp9_F_contig1141:10919..11159Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 10920..11159 -
1692277855.824478-CDS-Ecto-sp9_F_contig1141:10919..111591692277855.824478-CDS-Ecto-sp9_F_contig1141:10919..11159Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1141 10920..11159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1141.1213.1

>prot_Ecto-sp9_F_contig1141.1213.1 ID=prot_Ecto-sp9_F_contig1141.1213.1|Name=mRNA_Ecto-sp9_F_contig1141.1213.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=324bp
MRSGAIAVLAFVRAVLLVPNVTAYIPTSTSTSIAASVAPPHRCSTRCRAR
SSSTIGDSTASDPVGGVGIEPAAVAKPPLKVIRGRAGPTDATPTYDDTRP
LDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQE
ASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSK
LNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEF
FAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGA
LRQPNQPAVARCHQIDIDEDGSS*
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mRNA from alignment at Ecto-sp9_F_contig1141:7086..11205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1141.1213.1 ID=mRNA_Ecto-sp9_F_contig1141.1213.1|Name=mRNA_Ecto-sp9_F_contig1141.1213.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4120bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1141:7086..11205- (Ectocarpus species9 EcSCA_722f female)
CACAGGCAACAGTAGTAGTCCCATACACCGACGGGCAGGAGCGAGGATGA GGTCAGGAGCTATTGCAGTTCTTGCGTTCGTCCGCGCTGTGCTGCTGGTA CCGAACGTCACTGCCTACATCCCAACATCAACATCAACATCGATAGCAGC GTCGGTTGCGCCGCCTCATCGATGTAGCACGCGATGTCGAGCGCGGTCTT CGTCCACGATCGGGGACAGCACTGCTTCGGACCCTGTCGGAGGGGTCGGT ATCGAGCCTGCCGCCGTAGCAAAACCTCCACTCAAGGTGACGGTGGGGTG GCATCTGTTTGCCCATCACGATACCCTCGGTGACAACAATAAGTGCTTTC TGTATGTATGTACGAACCAGTATGTACATGTACTGCTGTACCAGGTTTCA TGTTCTGGAATAAGACGAGTCTACAGTATACATGTGCATCTCTTTGCTAC AATGAGGTGTAAAAGTATGCAAACACACAATAAAAAAACATAGACTACTT ATTCTTTCGGCGAGACTATTTACCCCACCGGCGGGGTAATTTCTTATCCG CCCCACTGGTGGGAAAAATATGCCCACCGGTGGAAAAAACAAGTCTTGTT TACCCCACCAGCTGTACCTCGCCTTCCGAGACTCTAATCCACACAGGACA TGAACGAGTGTGTTGCTGCGGTGCAGGGGGCTATCATGGGACCCGTCGTG AAGCCGGTACAGCTTTTGGTGCAGCCACGGCCGGTGGGGTAGATACAGCT GCCACGCCAGTGGCGGGGTACTGTAGATAGCCTGGCTTACCCCACCTGGA TCTCACCCTACAACTCTGATCGACTCACAAGCACCGGTAGAAGCGTGTAG TTGATGCACACACAGCACGCAGCAGCGGCCAGCGGCTGAGGGGGGCATCA GGTGCGGGAATCCCACCTCAGAGCGCCAAACAACTCACTCATGTGGAAGC CGAACACGGCCTTCTCTCTTCTTGAAGAAAGACTTCCTGCACTTGGTACC CCATGCACTGCGTCTCTTGCCCTCTTCTGCCCAAACGAAGCAACCGGCAC CTCCCCGCCGTGCTGCTTCTCAGCCACGTGTTTGAGCCGGGGTCTTTCCT CCAGCAAGTGGCTAAGAAGCAGCAGACGGTTATCGTGGGCGGGGCGGACA GCCCTCCTGTGATCGAAGCAGCAGCCGACGGCGGGGAGGTGCAGGTTATC GATGTGTTTACCTGCCCATGCAACACAATCATTTGTTCCCTTTACTTTCC GCGCGCGGTCAGCCGTCGCGAACCGCGAAGGTGGAACGGTCTTCTTCAAA GCTTCCTCCAAAGAGAAGCATGCAGCCGTGTCTACCTGCCACCATCCTCG TCAAGCTGGATGCTCGCACCTGCATGTGTGCATAGGTAGAGCTATAAGGG ACTCCGCCGTACGTGTTTCCAGGTGTCGGACTTCCGAACCCCTGACCGAC GATCCGCTTTGTTGCAAGGATTTTGCCGGAATGTCTTCGATTCTTAATGG GTTTCGGTTCTTGGATGTGTTGGGCTTTCTTCAATATACCTCTTTTGTCA AGCGAGTCGTTTGTAGATACGAAGCAACTTCACCCCACGGACAGCCTCTA CAACTCTCTCTCACTCTGCGCATTATGCATAGGTAATCCGAGGTCGCGCA GGGCCTACAGACGCGACGCCCACCTACGACGACACGCGACCGTTGGATCG GATACTGCTGGGCCTGTTTCGGTCAAAGCTGGCGGAAGAGGTCGGGGGGG ATGGCGATGCCTTCGAGCCTGGCTACGACGGTCTGATGGACATGATCAAG GTGTTGAACGAGAAGTTCCCTTCGAAGCGGAAGACGCAGGAAGCATCCAG GTACAGAGTGGGAGGGCGTCAGTAACACCGGTTGATAAGCGCCGGTGGCC CTATATAGCGCTGGTGAAATTGCTGGGCACAGGCTGAATCACTAAACCAT TCTGTGCATTGAATACAGCACGGTCCCTCTGAATAGCGCGGGTCGATGCG CCGGGAACATACCGCCGTTATTGAGCATCCCCCCCCTATATTTGTTTGTT GATGGCATACATGTCAGCGCCGAGGTAGCGTTCGACGGAGCACCCCGTAG CCCAATATCAGCGAGTATTGTTCACGTACTGGAGGAGTTAGAGGTTTGGC CATCATTGTCTCCTCCTTGCCCAGCTTCCACGCTTCTTTTTTAGCAACCC TTCCACGAATTTCCTTTTCCTTCCCACGAATCTCCTTTCCATTTCCTCTG CTGCAGGCGAGTATTGAAGTCCCTCTTCCCTTCTTGGCTGCCGGCAAGCT TCGCGGTGATGTTCTCGAAGCCGTTCCCGGCCTTCTCTTCGCGCTTGAAC GCCTGGGTGACCCTCGTCGCGTCTCAGTGGCTCATGGGGCCATCGAAGCT CAACGATATCGAGGTAAGGCGATCTCGTAACTACAGCAGTAATTAGCAAA GAGCCCAATTGCCGTGTCTATGGGTCATACTTGGCGAGACGCGCGGAAAG TCGACAACACTTGAGTCCCGCCCTGTCCTTTGAGGTTGTAAATAGTGTTA CTTCGTCACGCCTAAGCGCCGTGGCAATATATTTTCTCGGCGAAACAACT TGCCTGGAATACGAAATTCGATCCACTGTACGGGCTTATTCTACGGCACA ATGGATCGGGTGTTTATGCTGTCTCTGTAATACATTGTGAAGCACCGTCG ATGCGCGTTTTTTGCTCCTTCTGTTGAGGCAGATCGATGACGGGACTGTG GGTGTCGGACACGGCCTGCTTGTGGAGCGGTGCAGGTTTCTGGAAGCTGC GGGGTGCGCGTCGGTCTGCATGAACACGTGCAAGGCAAGGAGAAGAATCG TGAATTGTAACATGTTTAGGGGGGGGGCGATTCAATTATTCTCACTCTTT GTAACGTTGTCCCTTATTCTCAGCCTCCAATAGCGCATTCGGGTCGTCAA TGGAGCTCGAGGTTCTTTCTGGCAGGTGTCCCAGCGCCACTGTGCGCATA ATTAGTGTGTGTGTGTTTTCGCTTCTCTCATTCAGCTAAATAGTGTTTAT GCACTTGCTGCGTCCTCCTGTTCGGCTTCCCCGCCCTAGTTCGGCACGCT GGGAGTGCTTCGTTTCAGAACCTCGCGTCTTGTTTTCTTGCGATTGAGTT ATTTGTTTCACGCGTATATTGTGTTCTTGAACCTGCCATGTCATTTTTCT GTCCACGTAGGTGCCGACGGAAGAATTCTTCGCCAAGGACATGGGATTGG CACTGGAGATGACGCCGAATTACGAGGATTTCAGTTGCCAGGTACGAAGG CGTAGCCGTGACGTTATCTCTTTTAGGATCGGCAGCAAGGACGCGGCTTA CACGAGCGAGGTCTTGAACGTGCCGTCGTTAGGCGCAAGTTTAGGGTAGG CTGTAAACGGCATGGCCTTATGTGACGGGATTCCTCGTATGCGAGACTAT TCAAGCGCGGGTGGGTGTATTGTGTTTCGCGATATTCCGCATTTTATCTT TGCGTCGCACACCACTCCCGTGCTGTTTCTGACAGCAATGGAACGCGATT CAAATGGTATCGTCGCTTGATAGACCAAAACTCGAGGTTGGACCTCGACC CGACCTTGAGTTTACGTAGCAACAAAGTCATCTATTTTGGGTTTGTTGGT CGCTTTCATGTCTATACCCATGCTACTACAGCTCACCCCCAAGACTATAG CCGGCGGGCACCCCACCTGGGCCCTGACCCAGTGGTTTCCAATGCCGTCG TTGTGTGGTACCCGTCGTTGTCCGTCCGTATGTGCCAGTTTTCGTTCAAC AAGACTCCGTTGGCGAGGGACATGGACGAGGCGTTTCGGGTGGCGTGTTT CGAGCAATGCCCGTCACGAGGAGCGCTGAGGCAGCCGAACCAGCCGGCAG TCGCACGGTGTCATCAAATCGATATCGACGAAGACGGCAGTAGCTAAACG CCTTCACGTTTATGGTTTCGAGCATGTTTTTTTTATCTGGAAATATCGTT CGCTCAAATGTTTCTTTTGGTATGCATAGGCCAAGAGGTTCCGTATGACA CGAGACCGAGCGGCTGCATTGGAAGGAGAAGGTTGGGCGTACATAGTTGG TGCCGTGGTGGGGCAGAGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1141:7086..11205-

>mRNA_Ecto-sp9_F_contig1141.1213.1 ID=mRNA_Ecto-sp9_F_contig1141.1213.1|Name=mRNA_Ecto-sp9_F_contig1141.1213.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1141:7086..11205- (Ectocarpus species9 EcSCA_722f female)
ATGAGGTCAGGAGCTATTGCAGTTCTTGCGTTCGTCCGCGCTGTGCTGCT
GGTACCGAACGTCACTGCCTACATCCCAACATCAACATCAACATCGATAG
CAGCGTCGGTTGCGCCGCCTCATCGATGTAGCACGCGATGTCGAGCGCGG
TCTTCGTCCACGATCGGGGACAGCACTGCTTCGGACCCTGTCGGAGGGGT
CGGTATCGAGCCTGCCGCCGTAGCAAAACCTCCACTCAAGATGAGGTCAG
GAGCTATTGCAGTTCTTGCGTTCGTCCGCGCTGTGCTGCTGGTACCGAAC
GTCACTGCCTACATCCCAACATCAACATCAACATCGATAGCAGCGTCGGT
TGCGCCGCCTCATCGATGTAGCACGCGATGTCGAGCGCGGTCTTCGTCCA
CGATCGGGGACAGCACTGCTTCGGACCCTGTCGGAGGGGTCGGTATCGAG
CCTGCCGCCGTAGCAAAACCTCCACTCAAGGTAATCCGAGGTCGCGCAGG
GCCTACAGACGCGACGCCCACCTACGACGACACGCGACCGTTGGATCGGA
TACTGCTGGGCCTGTTTCGGTCAAAGCTGGCGGAAGAGGTCGGGGGGGAT
GGCGATGCCTTCGAGCCTGGCTACGACGGTCTGATGGACATGATCAAGGT
GTTGAACGAGAAGTTCCCTTCGAAGCGGAAGACGCAGGAAGCATCCAGGT
AATCCGAGGTCGCGCAGGGCCTACAGACGCGACGCCCACCTACGACGACA
CGCGACCGTTGGATCGGATACTGCTGGGCCTGTTTCGGTCAAAGCTGGCG
GAAGAGGTCGGGGGGGATGGCGATGCCTTCGAGCCTGGCTACGACGGTCT
GATGGACATGATCAAGGTGTTGAACGAGAAGTTCCCTTCGAAGCGGAAGA
CGCAGGAAGCATCCAGGCGAGTATTGAAGTCCCTCTTCCCTTCTTGGCTG
CCGGCAAGCTTCGCGGTGATGTTCTCGAAGCCGTTCCCGGCCTTCTCTTC
GCGCTTGAACGCCTGGGTGACCCTCGTCGCGTCTCAGTGGCTCATGGGGC
CATCGAAGCTCAACGATATCGAGGCGAGTATTGAAGTCCCTCTTCCCTTC
TTGGCTGCCGGCAAGCTTCGCGGTGATGTTCTCGAAGCCGTTCCCGGCCT
TCTCTTCGCGCTTGAACGCCTGGGTGACCCTCGTCGCGTCTCAGTGGCTC
ATGGGGCCATCGAAGCTCAACGATATCGAGATCGATGACGGGACTGTGGG
TGTCGGACACGGCCTGCTTGTGGAGCGGTGCAGGTTTCTGGAAGCTGCGG
GGTGCGCGTCGGTCTGCATGAACACGTGCAAGGCAAGGAGAAGAATCATC
GATGACGGGACTGTGGGTGTCGGACACGGCCTGCTTGTGGAGCGGTGCAG
GTTTCTGGAAGCTGCGGGGTGCGCGTCGGTCTGCATGAACACGTGCAAGG
CAAGGAGAAGAATCGTGCCGACGGAAGAATTCTTCGCCAAGGACATGGGA
TTGGCACTGGAGATGACGCCGAATTACGAGGATTTCAGTTGCCAGGTGCC
GACGGAAGAATTCTTCGCCAAGGACATGGGATTGGCACTGGAGATGACGC
CGAATTACGAGGATTTCAGTTGCCAGTTTTCGTTCAACAAGACTCCGTTG
GCGAGGGACATGGACGAGGCGTTTCGGGTGGCGTGTTTCGAGCAATGCCC
GTCACGAGGAGCGCTGAGGCAGCCGAACCAGCCGGCAGTCGCACGGTGTC
ATCAAATCGATATCGACGAAGACGGCAGTAGCTAATTTTCGTTCAACAAG
ACTCCGTTGGCGAGGGACATGGACGAGGCGTTTCGGGTGGCGTGTTTCGA
GCAATGCCCGTCACGAGGAGCGCTGAGGCAGCCGAACCAGCCGGCAGTCG
CACGGTGTCATCAAATCGATATCGACGAAGACGGCAGTAGCTAA
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