mRNA_Ecto-sp9_F_contig1141.1213.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI) HSP 1 Score: 607 bits (1564), Expect = 1.650e-217 Identity = 307/323 (95.05%), Postives = 309/323 (95.67%), Query Frame = 2
Query: 47 MRSGAIAVLAFVRAVLLVPNVTAYIPTSTSTSIAASVAPPHRCSTRCRARSSSTIGDSTASDPVGGVGIEPAAVAKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDEDGSS 1015
MRSG IAVLAFVRAVLLVPNVTAYIPTSTSTS +A +APPHRCSTRCRARSSSTIG STA DPVGG GIEPA AKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK VPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDED SS
Sbjct: 1 MRSGVIAVLAFVRAVLLVPNVTAYIPTSTSTSKSAWIAPPHRCSTRCRARSSSTIGGSTALDPVGGAGIEPADAAKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK-----VPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDEDDSS 318
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: PROTEASOME_ALPHA_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE) HSP 1 Score: 396 bits (1017), Expect = 2.360e-129 Identity = 215/271 (79.34%), Postives = 219/271 (80.81%), Query Frame = 2
Query: 47 MRSGAIAVLAFVRAVLLVPNVTAYIPTSTSTSIAASVAPPHRCSTRCRARSSSTIGDSTASDPVGGVGIEPAAVAKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 859
M+SGAIA LAF AVLLVP VTAYI TSTSTSI+A VAPPHRCSTRCRARSSSTIG STASD VGG GIEPA AKPPLKVIRGRAGPT ATPTYDDTRPLDRILLGLFRSKLAEEVG DGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFP+WLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLND+E VPTEEFFAKDMGLALEMTPNYEDFSCQ
Sbjct: 1 MKSGAIAPLAFFCAVLLVPKVTAYILTSTSTSISALVAPPHRCSTRCRARSSSTIGGSTASDSVGGAGIEPADAAKPPLKVIRGRAGPTAATPTYDDTRPLDRILLGLFRSKLAEEVGEDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPAWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDVE---------------------------------------VPTEEFFAKDMGLALEMTPNYEDFSCQ 232
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA) HSP 1 Score: 285 bits (730), Expect = 1.830e-92 Identity = 135/218 (61.93%), Postives = 171/218 (78.44%), Query Frame = 2
Query: 356 ILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEK--FPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDE 1003
+LLGLFR KLA E+ DG +PGY GL++MI+ LN+ +P+ TQ+A+R+VL+SLFP WLP +FAVMFSKPFP FS R+NAWVTLVASQWLMGPSK+ND+EID G +GVGHGLLV+RCR+LE AGCASVC+NTCK +PT+EFF KDMGL L+MTP+Y+DFSCQFSF K PL + DE F VACFEQCP++ + ++ CH++ ++E
Sbjct: 1 MLLGLFRKKLAAELQYDGS--DPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCK-----IPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKR-------LCHKVGLEE 204
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO) HSP 1 Score: 271 bits (692), Expect = 6.810e-86 Identity = 125/215 (58.14%), Postives = 161/215 (74.88%), Query Frame = 2
Query: 302 AGPTDATPTYDD--TRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR 940
AGPTD P+Y D ++P++ +++ LFR K+ +G D + + GYD ++D+ + LN KF + +TQEA+R +L +LFPSWLP +F VMFSKPFP FS RLNA T + QWLMGP K+ND+EID G VG GHG+LVERCR+LE AGCASVC+N+CK +PT+ FF+KDMGL L MTPNYEDFSCQF+F KTP+ +MDEAF CF QCPS+
Sbjct: 42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELY--GYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVEIDGGIVGKGHGVLVERCRYLEQAGCASVCINSCK-----IPTQTFFSKDMGLQLTMTPNYEDFSCQFAFGKTPMLAEMDEAFTTPCFRQCPSK 249
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: Predicted (protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE) HSP 1 Score: 266 bits (680), Expect = 6.700e-84 Identity = 130/235 (55.32%), Postives = 161/235 (68.51%), Query Frame = 2
Query: 299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR-------GALRQPNQPAVA 976
+AGP DA P Y D++PL+ I++ LFR K+ E +G D GYD ++D+ + LN KF + +TQEA+R +L +LFPSWLP +F VMFS+P P FS RLNA T + QWLMGP K+ND+EID G VG GHG+LVERCR+LE AGCASVC+N+CK VPT+ FF KDMGL L MTPNY+DFSCQFSF KTP D D AF CF QCPS+ G + P+ P A
Sbjct: 50 QAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKL--SGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVEIDGGKVGTGHGVLVERCRYLEQAGCASVCINSCK-----VPTQSFFEKDMGLPLTMTPNYDDFSCQFSFGKTPDPVDRDPAFATPCFTQCPSKRSRTPVCGGIELPSMPGAA 277
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO) HSP 1 Score: 264 bits (674), Expect = 1.350e-83 Identity = 121/218 (55.50%), Postives = 159/218 (72.94%), Query Frame = 2
Query: 299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGA 946
+AGP + P Y D++PL+++++ LFR K+ +G D GY+ ++D+ + LN + R+ Q +R++LKSLFPSWLP +FAVMFSKP P FS +LNA T + QWLMGP K+ND+E+DDG+VG G G+LVERCR+LE AGCAS+C+N+CK VPT+EFF KDMGL L MTPNYEDFSCQF+F K PL + +DEAF CF+QCPSR A
Sbjct: 1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQL--SGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVELDDGSVGQGMGVLVERCRYLEQAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQFTFGKAPLPQQLDEAFSTPCFQQCPSRAA 211
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC) HSP 1 Score: 261 bits (667), Expect = 1.340e-82 Identity = 122/227 (53.74%), Postives = 159/227 (70.04%), Query Frame = 2
Query: 299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAV 973
+AGP P+Y+ D++PL+R ++ LFR K+ +G + D + GYD ++D+ ++LN K + R TQ +R++L SLFPSWLP +F VMFSKP P S +LNAWVT++ QWLMGP K+ND+E+D G +G G G+LVERCR+LE GCASVC+N+CK +PT+EFFAKDMGL L MTPNYEDFSCQFSF TP +DEAF CF QCPS+ R P
Sbjct: 7 KAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSD--KEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVELDGGRIGSGQGVLVERCRYLEETGCASVCLNSCK-----IPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPAAIDEAFATPCFSQCPSKQRHRGDRCPGA 226
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO) HSP 1 Score: 262 bits (670), Expect = 3.270e-82 Identity = 129/235 (54.89%), Postives = 162/235 (68.94%), Query Frame = 2
Query: 299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR-------GALRQPNQPAVA 976
+AGP P+Y D +PL+R+++ LFR K+ E +G D GY ++D+ + LN ++ + R TQ A+RR+L SLFPSWLP +F VMFS P PAFS RLNA T + QWLMGP K+ND+E+D G VG G G+LVERCR+LE AGCAS+C+N+CK VPT+EFF KDMGL L MTPNYEDFSCQF+F KTPL + DEAF CF QCPS+ GA R + P VA
Sbjct: 64 QAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQL--QGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVELDSGEVGSGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQFAFGKTPLPQSQDEAFSTPCFTQCPSKKRTFSDGGAGRPGDCPNVA 291
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO) HSP 1 Score: 257 bits (657), Expect = 7.850e-80 Identity = 121/216 (56.02%), Postives = 153/216 (70.83%), Query Frame = 2
Query: 299 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR 940
+AGP A P Y D +PL+R+++ LFR K+AE +G D GY ++D+ + LN ++P+ R TQ +R +L SLFP WLP +F MFS+P PA S RLNA+ T + QWLMGP K+ND+EID G VG G G+LVERCR+LE AGCAS+C+N+CK VPT+EFF KDMGL L MTPNY+DFSCQF+F KTP + DEAF CF QCPSR
Sbjct: 21 QAGPAAAAPDYAGVDAQPLNRVVMALFRRKMAEAIGSDSQL--QGYPAIIDLTRRLNRQYPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVEIDGGQVGAGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYDDFSCQFAFGKTPQPQAEDEAFSTPCFTQCPSR 229
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Match: D27-like_C (domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO) HSP 1 Score: 259 bits (661), Expect = 1.410e-79 Identity = 122/213 (57.28%), Postives = 156/213 (73.24%), Query Frame = 2
Query: 320 TPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALR 952
TP+Y D +PL++I++ LFR K+ VG D GYD ++D+ + LN KF + +TQEA+R +L +LFPSWLP +F VMF++P P S R+NA T + QWLMGP K+ND+E DDGTVG GHG+LVERCR+LE AGCA+VC+N+CK VPT+ FFAKDMGLAL MTPNY+DFSCQF+F KTPL DEA+ +CF QCPS+ A R
Sbjct: 171 TPSYAAIDVQPLNKIVMALFRRKMVAAVGSDSPL--SGYDAIIDLTRRLNNKFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVETDDGTVGEGHGVLVERCRYLEQAGCAAVCINSCK-----VPTQSFFAKDMGLALTMTPNYDDFSCQFAFGKTPLPVSADEAYTTSCFAQCPSKKARR 376 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1141.1213.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1141.1213.1 >prot_Ecto-sp9_F_contig1141.1213.1 ID=prot_Ecto-sp9_F_contig1141.1213.1|Name=mRNA_Ecto-sp9_F_contig1141.1213.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=324bp MRSGAIAVLAFVRAVLLVPNVTAYIPTSTSTSIAASVAPPHRCSTRCRARback to top mRNA from alignment at Ecto-sp9_F_contig1141:7086..11205- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1141.1213.1 ID=mRNA_Ecto-sp9_F_contig1141.1213.1|Name=mRNA_Ecto-sp9_F_contig1141.1213.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4120bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1141:7086..11205- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1141:7086..11205- >mRNA_Ecto-sp9_F_contig1141.1213.1 ID=mRNA_Ecto-sp9_F_contig1141.1213.1|Name=mRNA_Ecto-sp9_F_contig1141.1213.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1141:7086..11205- (Ectocarpus species9 EcSCA_722f female)back to top |