mRNA_Ecto-sp9_F_contig11408.1211.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11408.1211.1
Unique NamemRNA_Ecto-sp9_F_contig11408.1211.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: MBipA, (mitochondrial GTPase BipA/TypA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD8_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 2.280e-166
Identity = 246/251 (98.01%), Postives = 246/251 (98.01%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGNKLEPIEEV 753
            WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVE GKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGP GGKDGTYMTASKIKDRL YETENNVTILVN VSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGN LEPIEEV
Sbjct:  228 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEAGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPLGGKDGTYMTASKIKDRLTYETENNVTILVNNVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGNTLEPIEEV 478          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: MBipA, (mitochondrial GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C927_9STRA)

HSP 1 Score: 257 bits (657), Expect = 4.470e-78
Identity = 145/253 (57.31%), Postives = 175/253 (69.17%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEPSMRF--LLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGNKLEPIEEV 753
            WAT  LD A+ W K AP P++R   LLD I E V PP   + L EPFA+AVNNIG+D +LG L TGK+ SGV+ VG   + L R  G  Q  P KVA++FVTRG TREPL   +AGAGDI+T+AG    VGDTI  A  G + PL TP + PPTL+M FG N GP GG +G+ +TAS I+ RL  ETENNVT+ V +  +D DK +V GRGE+QLGILIE +RREG+EF VSPPRVLT   E+G  LEP EEV
Sbjct:  217 WATTHLDNAVVWSK-APPPALRMEALLDAILEHVPPPCGAAALEEPFALAVNNIGADNFLGPLTTGKVESGVLRVGAMARWLAR-DGQSQGAPAKVAQVFVTRGTTREPL-IGAAGAGDIVTIAGIGGAVGDTITAAEGGVDAPLATPPLPPPTLSMTFGANDGPLGGTEGSTLTASAIRARLERETENNVTLRVAQCVTDVDKVDVFGRGEMQLGILIETLRREGFEFVVSPPRVLTAVGEQGEALEPYEEV 466          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCW0_9STRA)

HSP 1 Score: 246 bits (629), Expect = 5.170e-74
Identity = 144/261 (55.17%), Postives = 177/261 (67.82%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEP---------SMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEE-GNKLEPIEEV 753
            WATED+D A+ W K   E          +M  LLD I  TV PP   + L +P A AVN+IG+D+Y+GRLATGKI +GV+ +G  ++ L + G    SG  +V  ++ TRGV R  L    AGAGDI+TVAG DC VGDTI    +G  +PL TP +AP TL+MVFG N  P GG++GT++T++KIKDRL  ETENNVTI V  V  + +K EV GRGELQLGILIENMRREGYE CVSPP+V+ T DEE G  LEP EEV
Sbjct:  201 WATEDVDLAMEWSKMKREDRPKEGHGAANMVALLDCIVSTVPPP-SSAALEQPLAFAVNSIGTDSYVGRLATGKIEAGVMSIGTDIRVLQQDGTPGASG--RVTAVYGTRGVERVAL-EGPAGAGDIVTVAGVDCGVGDTITTVKDGVAEPLATPPIAPSTLSMVFGTNDSPLGGREGTHVTSTKIKDRLIRETENNVTISVAPVPGESEKMEVRGRGELQLGILIENMRREGYELCVSPPQVILTRDEETGQVLEPFEEV 457          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYA7_9STRA)

HSP 1 Score: 200 bits (509), Expect = 4.720e-57
Identity = 129/281 (45.91%), Postives = 163/281 (58.01%), Query Frame = 1
Query:    7 TEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPY------DESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGR----LGGGEQSGPHKVAELFVTRGVTREPLGASS-------------------AGAGDIITVAGA--DCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEE-GNKLEPIEEV 753
            T D D+A+S      E +M  LL+ + + +  P       DE+  +  FAM    +G D YLGRL TG+I SG V+   SV  L R          S P  +A +FV RG+ R  L  SS                     AGDI+T+AG      VGDT+  A +    P+ TP +APPTL++ FG N+GP  GK+GT +TAS+++DRL  ET+NNVT+LV K  SD +K  V GRGELQ+GILIE MRREGYEF VSPPR+LTT DEE G KLEP EEV
Sbjct:   98 TSDCDEALS-----NEANMTVLLNAMMDYIPEPRIHTFDDDENNSTSTFAMTATTVGYDQYLGRLCTGRIFSGSVKANDSVVVLPRDDTENSQSSYSAPSNIAGIFVNRGIARTALETSSPSLQQQSEDNDDATNHQVITSAGDIVTLAGIPDSMKVGDTLTSAAQPIRKPIDTPPLAPPTLSVDFGANSGPLSGKEGTIITASRVRDRLYKETDNNVTLLVTKSESDAEKTVVFGRGELQIGILIEQMRREGYEFTVSPPRILTTTDEETGAKLEPYEEV 373          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Tr-type (G domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRE5_BRELC)

HSP 1 Score: 192 bits (488), Expect = 1.580e-54
Identity = 122/252 (48.41%), Postives = 159/252 (63.10%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGN-KLEPIEEV 753
            WA  DLD         P  SM  LLD I   V  P  E+   +PFAMAV  IG D Y+GRLATG+I +G V++G S++ + R     +SG  +V ++FVTRGV +  +   SA AGDIIT+AG +  V DTIA       DP+P+P + PPT++M FGVN  P  GK+G ++T+S IK RL  E ENNV I ++  S+  +  +V GRGELQL ILIE MRREG+E  +S P+V+  +D E N KLEPIEEV
Sbjct:   82 WAVHDLDNT-----DEPHDSMMPLLDEILRYV--PAPEANADKPFAMAVTMIGHDPYVGRLATGRIHAGTVKIGDSIQVMNRESKKLESG--RVTKMFVTRGVVKSEV--KSATAGDIITIAGVNAYVSDTIADV--SVTDPIPSPQLDPPTISMTFGVNDAPNAGKEGKFLTSSHIKQRLERECENNVAISISP-SASSEAFDVHGRGELQLAILIEEMRREGFEMSISAPQVIFQKDPETNQKLEPIEEV 319          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCP3_PYTOL)

HSP 1 Score: 194 bits (493), Expect = 2.420e-54
Identity = 124/252 (49.21%), Postives = 161/252 (63.89%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVL-TTEDEEGNKLEPIEEV 753
            WA  DLD         P+ +M+ LLD I + V  P  E+  + PFAMAV  IG D Y+GRLATG++ SG +++G +++ L       +SG  KV +LFVT+GV R  +   SA AGDIIT+AG +  V DTI C  E  E P+P+P + PPT++M FGVN  P  GK+G ++T+S IK+RL+ E ENNV I +   S   +   V GRGELQL ILIE MRREG+E CVS P+VL  T+ E   KLEPIEEV
Sbjct:  206 WAVRDLDD-----DGEPKTNMKALLDQIIDYV--PRPEADTTAPFAMAVTMIGHDPYVGRLATGRVSSGSIKIGDTIQVLNLESKKLESG--KVTKLFVTKGVARTEV--DSATAGDIITLAGVNAYVSDTI-CNPEVSE-PIPSPQLDPPTISMTFGVNDSPIAGKEGKFLTSSHIKERLHRECENNVAISITN-SESSEAFNVHGRGELQLAILIEEMRREGFEMCVSAPQVLFKTDSETKQKLEPIEEV 443          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Tr-type (G domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024FYA2_9STRA)

HSP 1 Score: 191 bits (484), Expect = 4.530e-53
Identity = 122/252 (48.41%), Postives = 159/252 (63.10%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTE-DEEGNKLEPIEEV 753
            WA  ++D      K   E SM+ LLD I   V PP  +   + PFAM+V  IG D Y+GRL TG+I  G V++G S++ + R     ++G  KV +LFVTRGV++  +    A AGDI+T+AG +  V DT+ C     E  +PTP + PPT++M FGVN  P  G+DG Y+T+S IKDRL  ETENNV I ++K S   +  +V GRGELQL ILIE MRREG+E CVS PRVL  +  +   KLEPIEEV
Sbjct:  202 WAVREVDST----KEKRE-SMKVLLDEIIAYVPPPTADP--NAPFAMSVTMIGHDPYVGRLVTGRIYGGAVKIGDSIQVINRDDKRLETG--KVTKLFVTRGVSKSEV--QHASAGDIVTLAGVNAFVSDTV-CNPSVNES-IPTPKLDPPTISMTFGVNDSPIAGQDGKYLTSSHIKDRLTRETENNVAISISK-SDSSEAFDVHGRGELQLAILIEEMRREGFEMCVSAPRVLFKQCPDTKQKLEPIEEV 439          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: GTP-binding (protein TypA/BipA n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVH4_9STRA)

HSP 1 Score: 192 bits (489), Expect = 5.010e-53
Identity = 123/252 (48.81%), Postives = 158/252 (62.70%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEE-GNKLEPIEEV 753
            WA   LD      ++    SM+ LLD I + V PP  +  LS PF+MAV  +G D Y+GRLATG + SG V+VG ++  + R G   +SG  KV ++FVT+G T+  +   SA AGDIITVAG +  V DTIA         +P+P + PPT++M FGVN  P  GK+G ++T+  IK+RL  ETENNV I V   S   +   V GRGELQL ILIE MRREG+E CVS PRVL  + E+  NKLEP+EEV
Sbjct:  193 WAVNSLDD-----ESESRTSMKALLDQIVDYVPPPQVD--LSSPFSMAVTMLGHDPYVGRLATGLVHSGTVKVGDAIHVIDRDGKKLESG--KVTKMFVTKGTTKSEI--QSAEAGDIITVAGVNAYVSDTIANPEVVTS--IPSPQLDPPTISMTFGVNDSPIAGKEGKFLTSGHIKERLMRETENNVAISVTN-SETSESFNVHGRGELQLAILIEEMRREGFEMCVSAPRVLFKQCEDTNNKLEPVEEV 430          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Tr-type (G domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XGW1_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.120e-52
Identity = 122/252 (48.41%), Postives = 157/252 (62.30%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGN-KLEPIEEV 753
            WA   LD       +    SM+ LLD I + V  P  +S  ++PF+MAV  +G D Y+GRLATG++ +G V+VG  +  + R G   +SG  K+ +LFVTRG T+  +  + A AGDIITVAG +  V DTIA         +P+P + PPT++M FGVN  P  GK+G ++T+  IK+RL  ETENNV I V   S   +   V GRGELQL ILIE MRREG+E CVS PRVL   DEE N KLEP+EEV
Sbjct:  198 WAVNSLDD-----DSEDRTSMKALLDQIIDYVPAPEADS--AKPFSMAVTMLGHDPYVGRLATGRVHTGRVKVGDPIHVVNRDGQKLESG--KITKLFVTRGTTKSEI--TEAEAGDIITVAGVNAYVSDTIANPEVLMS--IPSPQLDPPTISMTFGVNDSPIAGKEGKFLTSGHIKERLQRETENNVAISVT-ASETSEAFNVHGRGELQLAILIEEMRREGFEMCVSAPRVLFKHDEETNQKLEPVEEV 435          
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Tr-type (G domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YK89_PHYSP)

HSP 1 Score: 188 bits (477), Expect = 4.420e-52
Identity = 120/252 (47.62%), Postives = 160/252 (63.49%), Query Frame = 1
Query:    1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGN-KLEPIEEV 753
            WA  DLD      +     SM  LLD I   V  P  ++  S+PFAMAV  IG D Y+GRLATG++ +G V++G S++ + R     ++G  +V ++FVTRGV +  +  +SA AGDIIT+AG +  V DTIA       +P+P+P + PPT++M FGVN  P  GKDG ++T+S IK RL  E ENNV I ++  S+  +  +V GRGELQL ILIE MRREG+E  VS P+V+   D E N KLEPIEEV
Sbjct:  208 WAVHDLDN-----EGEARDSMLPLLDEITRYVPAPNTDA--SKPFAMAVTMIGHDPYVGRLATGRVHAGTVKIGDSIQVMNRDSKKLETG--RVTKMFVTRGVAKSEI--TSATAGDIITIAGVNAYVSDTIADV--NVTEPIPSPQLDPPTISMTFGVNDAPTAGKDGKFLTSSHIKQRLERECENNVAISISP-STSSEAFDVHGRGELQLAILIEEMRREGFEMSVSAPQVIFKTDPETNQKLEPIEEV 445          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MBipA,2.280e-16698.01mitochondrial GTPase BipA/TypA n=1 Tax=Ectocarpus ... [more]
MBipA,4.470e-7857.31mitochondrial GTPase n=1 Tax=Tribonema minus TaxID... [more]
Hypothetical5.170e-7455.17protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Hypothetical4.720e-5745.91protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Tr-type1.580e-5448.41G domain-containing protein n=1 Tax=Bremia lactuca... [more]
Uncharacterized2.420e-5449.21protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Tr-type4.530e-5348.41G domain-containing protein n=2 Tax=Albugo TaxID=6... [more]
GTP-binding5.010e-5348.81protein TypA/BipA n=1 Tax=Thraustotheca clavata Ta... [more]
Tr-type1.120e-5248.41G domain-containing protein n=5 Tax=Aphanomyces Ta... [more]
Tr-type4.420e-5247.62G domain-containing protein n=2 Tax=Phytophthora T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11408contigEcto-sp9_F_contig11408:113..3631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score488.0
Seed ortholog evalue2.6e-135
Seed eggNOG ortholog2880.D7FRD8
KEGG koko:K06207
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0042802,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045901,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:2000112
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0481@1,KOG0462@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMBipA, mitochondrial GTPase BipA/TypA
Ec32 orthologEc-21_002560.1
Exons5
Model size753
Cds size753
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11408.1211.1prot_Ecto-sp9_F_contig11408.1211.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11408 113..3631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928389.3111596-CDS-Ecto-sp9_F_contig11408:112..2291622928389.3111596-CDS-Ecto-sp9_F_contig11408:112..229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 113..229 -
1692277855.6408808-CDS-Ecto-sp9_F_contig11408:112..2291692277855.6408808-CDS-Ecto-sp9_F_contig11408:112..229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 113..229 -
1622928389.330105-CDS-Ecto-sp9_F_contig11408:941..10571622928389.330105-CDS-Ecto-sp9_F_contig11408:941..1057Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 942..1057 -
1692277855.6546016-CDS-Ecto-sp9_F_contig11408:941..10571692277855.6546016-CDS-Ecto-sp9_F_contig11408:941..1057Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 942..1057 -
1622928389.3488657-CDS-Ecto-sp9_F_contig11408:1626..17721622928389.3488657-CDS-Ecto-sp9_F_contig11408:1626..1772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 1627..1772 -
1692277855.664008-CDS-Ecto-sp9_F_contig11408:1626..17721692277855.664008-CDS-Ecto-sp9_F_contig11408:1626..1772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 1627..1772 -
1622928389.3669555-CDS-Ecto-sp9_F_contig11408:2430..26431622928389.3669555-CDS-Ecto-sp9_F_contig11408:2430..2643Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 2431..2643 -
1692277855.6760378-CDS-Ecto-sp9_F_contig11408:2430..26431692277855.6760378-CDS-Ecto-sp9_F_contig11408:2430..2643Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 2431..2643 -
1622928389.383581-CDS-Ecto-sp9_F_contig11408:3470..36311622928389.383581-CDS-Ecto-sp9_F_contig11408:3470..3631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 3471..3631 -
1692277855.68433-CDS-Ecto-sp9_F_contig11408:3470..36311692277855.68433-CDS-Ecto-sp9_F_contig11408:3470..3631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11408 3471..3631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11408.1211.1

>prot_Ecto-sp9_F_contig11408.1211.1 ID=prot_Ecto-sp9_F_contig11408.1211.1|Name=mRNA_Ecto-sp9_F_contig11408.1211.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=251bp
WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVN
NIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVT
RGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAP
PTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDP
DKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGNKLEPIEE
V
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mRNA from alignment at Ecto-sp9_F_contig11408:113..3631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11408.1211.1 ID=mRNA_Ecto-sp9_F_contig11408.1211.1|Name=mRNA_Ecto-sp9_F_contig11408.1211.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3519bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11408:113..3631- (Ectocarpus species9 EcSCA_722f female)
TGGGCAACCGAAGACCTAGACCAAGCGATTTCATGGTGCAAGACGGCGCC GGAGCCGAGCATGCGGTTCCTGCTGGACCACATCGCGGAGACAGTGCGCC CCCCGTACGACGAGTCGATGCTGTCGGAGCCGTTCGCGATGGCCGTTAAC AACATCGGCAGGTAGGTTTGTCACGAGAAGCGTTAGCTCGAGTCGATTTG TTGGCCACTTGTTCACAGCCGCAGACACACACACCGACACTTCATTGGTC GGTCAGCCGGCTTACGCGGTCGATGCTATAGCAACAATGGCACACATAGA CACACGCACGTAAGAAGTAGGTGTTGCCTCGGCGGATAGAGTACTGCCTC GAGTGGGGTATGGCGTTGACAAGGGCGTCTGCTTGGTTCGAACGTGCTGG AGGCTGATCCTGGTCCTGTGTTGAGAATCTCGTGTACAGCAGGCGCGGTA CGTAGCCCCCTTTTGCTTTCTCACCTCGATTGTGGTCTCCCACAAGAGGG TGCGCCTCTCTTGGCTGCGGTGTCGTCGGCCGGCACACATACGTGTACTA AGTTTCGTTCCGCTCTCCTTTTCCCACAAGCTCCATGCACCCTCGCGGCG CGAAACGTGAACCGAATGCCCTCTCTCTTTTGCCACCCCGACCGCGGGCG TAGCAGCAGTATCCGCAGAGACATGCTCATACGCATCTGACACGCCAATG TCAGAGCAGTGTCAATGTCACCACCCCCCGTAGCAATAACGTCAACAAAC CGCAACCACCACCGTCAAAAGCACAACCGCGACCACCTCAACCGACCACA AACGCACCGCCCTCAACGGCCACAACCACAATCACAATCAACCATAAGCA CACCACGGTCAACAACACTATCGCAACAACCACACCAACTCAACAAAACC ACCACCACCACCACCACCACCAACACCACCACCAACAACAACAACAACAA CAACAACAATCAACAATAACAATAACAATAACCGACAGTGACACGTACCT GGGCCGACTGGCGACGGGCAAGATCGTGTCCGGGGTGGTGGAGGTGGGCA AGTCCGTCAAGACCCTCGGGAGGCTCGGCGGCGGGGAGCAGTCCGGGCCG CACAAGGTTGCGGAGCTATTCGTGACGAGGGGAGTTACTAGAGAGCCGCT GGGGGCGTCGTCGGCGGGGGCCGGGGACATCATCACCGTGGCGGGGGCAG AGTGAGTCATGTAGGTTTTTGGTAGTGGCGAAGGAGGAGAATAGAGAAGG ATGGCAATATGACGATAGAGCAGGAAAAAACGGCGGTGAAGAGAACAAGA GTTTCGAGCCAGATGTCAGCGAACGCCGCAGGAATAGAGAGTACAGTACT GAAGAGGAAGAAGAAGGGCGCCGTATTAGTGCTGGTGCTACCTCCCTCGT CAGCCCCCGGCATTGTATGTGGTGTTTTTTTTATTCTTTCCTTTTCGTGC TGTTTGCGTTACTGAAGGGCTGGGGAATCGGGCGGTTCCTCTCTTGATTC TGTGTGCGTTTCGGCGGCGTTGTGTGCGCGTGTGAACCAGTCTGGGCATC AGAGGCGGGGTTGGGAGTCGAACGTTTTTCTCTGTCGATGCGGTGTCATG TGTGGTTCGTTGATAGATGCAGGTGCCAGCGTGGGCTTCTTGAGGGCTGT CGGCTGCTGCATCGTCCACCCAGCCCCTCTTCCCCCCGTCTCTGGCTCCA CCCACGACCTAACCCCCCGCCAAGCCAATTTTCTCGAGTGTCTTCTCCAT CCAATCAGCTTACGCTCTCCTCCCCCCCGCCTCCCCCCCCCCTCCGTCAC CGTGTTGGCCCTTTTGATACTTGGTACCACTCGCGCTTGTTTCGCTCTGT TTCTGCTAGCTGCTGCGTGGGAGACACCATAGCGTGCGCCGTGGAGGGGC GAGAGGACCCACTGCCTACCCCGGGGGTTGCACCGCCCACGTTGGCCATG GTGTTCGGGGTTAACACAGGCCCTTTCGGGGGGAAAGACGGGACGTACAT GACAGGTCAGGCAATAAAAAAAAGTGGGTAGCTTCCTTGTGCGCATGCCG GCGCGCAGGGTGGGACGGGGGTCGGGAATGGTAGTGCGGGTCAGGGGCGG GGACGTAGAGGCTTGCGGGGGGGGGGGCGGGCGTGTTACTTGGGTTTCTT CTGCTAGTTTGGAATTCGACCTGGGGGGGGGTACGAGAGGATCAGGAGCG ACGGAGCGTCCTCGTTGGTTGGTCCGCTTGTGCCCGAAACTGCTTTCTTC TTCTTTCGTATACGCGTGCGTTTGCCTTTTTGTTCTCTCTCTCTCTCTCT GTCCGTTTTCTGTGTTTTCCCCGTCAGAGTAAGCGCATGTCTTGGCGGGA GAATTATACGCAAAGCGCCTTTTTTTTTTTCCCGTCGGCTGCACAGCTGC TCTAGCGGTCGCGCGCCTGCACACGCAAGTGTCTTTTTGTCGGCGTGCTC TAAGCCGTGGGGATAGGTTTTCTAGTTCGTGGCGTTTTTCCTCGTCAGTG TCTCTGCCATCAGCTACCCCCCCCCGGCCCCAAGGCTACCCCACGACATC AACGCTCTGATCCCGTCCGCGCAGCATCTAAGATCAAGGATCGGCTCAAC TACGAGACAGAGAACAACGTGACCATCCTGGTGAACAAGGTGTCTTCGGA CCCCGACAAGGCCGAAGTTTTGGGGAGGGGAGAGCTCCAGGTAAGTACGC GCACGGGGGAGGGGAGGGAATGTGTGCGTGTAGATGGAGAGAGAAGGGAG GGGGGGACGTGCTTTTTGTTTCTTTCTACAGTTAGCTTATCTTTTGGTGT AGTGGCCCGCTCGCTGCTCGACGATGCGTGCGGGACGCTTTTTCTTTTTT TCCCGAAACGCCCACCTTCTTTTCATTGGCCGTGATTCTTGCAAGCCCGA TATAAATTCCGGACACCATGGCTGGTGTTTCGTACGCCAGAAATCTGCAT GCTGGTTAACAAATCGTTGCGAAAAATCTTGTCTACCGTTGACGCCCGCA GGGCGGTCGCGTCCGCGCACAACCAAAAGTTGTTAGTCATAGAGTCGTAG CCTAGTTGCGCGGGTCGTGTTCCATCGGAGGTACTCGAAGGCTCTAGGGG TGTGTGCATAGCGCTCCCGCCCTCGCCTCCCGGCAAGAGTTCGCCGACGT TTGCAGTCTTGGCAGGGTCGCGAAAGAGACAGCTCCCGAGGTCGACGGTG TCCCTTCCGGGAATAGGGCCGAGGCTTCGGCTGGAAGTAGCGCTTGACTG CTGGCGAATCGAATCGAAGCGCCTCAGGTTAGGTTTCAACTGAGCTTGCT TCCCCCCCGTTCTCTCTTTCTTGCTCATGTGTTGGCCCCCCCTGATGTTC CGCCAATCGGGCGTGCGTCTCTGCGTGGTGGCGTTGCCACGAAAACGAAA AGCTGGGCATCCTTATCGAGAACATGCGGCGGGAAGGGTACGAGTTTTGT GTGTCGCCGCCAAGGGTGCTCACCACGGAGGACGAGGAGGGGAACAAGCT AGAGCCCATCGAAGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11408:113..3631-

>mRNA_Ecto-sp9_F_contig11408.1211.1 ID=mRNA_Ecto-sp9_F_contig11408.1211.1|Name=mRNA_Ecto-sp9_F_contig11408.1211.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1506bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11408:113..3631- (Ectocarpus species9 EcSCA_722f female)
TGGGCAACCGAAGACCTAGACCAAGCGATTTCATGGTGCAAGACGGCGCC
GGAGCCGAGCATGCGGTTCCTGCTGGACCACATCGCGGAGACAGTGCGCC
CCCCGTACGACGAGTCGATGCTGTCGGAGCCGTTCGCGATGGCCGTTAAC
AACATCGGCAGTGGGCAACCGAAGACCTAGACCAAGCGATTTCATGGTGC
AAGACGGCGCCGGAGCCGAGCATGCGGTTCCTGCTGGACCACATCGCGGA
GACAGTGCGCCCCCCGTACGACGAGTCGATGCTGTCGGAGCCGTTCGCGA
TGGCCGTTAACAACATCGGCAGTGACACGTACCTGGGCCGACTGGCGACG
GGCAAGATCGTGTCCGGGGTGGTGGAGGTGGGCAAGTCCGTCAAGACCCT
CGGGAGGCTCGGCGGCGGGGAGCAGTCCGGGCCGCACAAGGTTGCGGAGC
TATTCGTGACGAGGGGAGTTACTAGAGAGCCGCTGGGGGCGTCGTCGGCG
GGGGCCGGGGACATCATCACCGTGGCGGGGGCAGATGACACGTACCTGGG
CCGACTGGCGACGGGCAAGATCGTGTCCGGGGTGGTGGAGGTGGGCAAGT
CCGTCAAGACCCTCGGGAGGCTCGGCGGCGGGGAGCAGTCCGGGCCGCAC
AAGGTTGCGGAGCTATTCGTGACGAGGGGAGTTACTAGAGAGCCGCTGGG
GGCGTCGTCGGCGGGGGCCGGGGACATCATCACCGTGGCGGGGGCAGACT
GCTGCGTGGGAGACACCATAGCGTGCGCCGTGGAGGGGCGAGAGGACCCA
CTGCCTACCCCGGGGGTTGCACCGCCCACGTTGGCCATGGTGTTCGGGGT
TAACACAGGCCCTTTCGGGGGGAAAGACGGGACGTACATGACAGCTGCTG
CGTGGGAGACACCATAGCGTGCGCCGTGGAGGGGCGAGAGGACCCACTGC
CTACCCCGGGGGTTGCACCGCCCACGTTGGCCATGGTGTTCGGGGTTAAC
ACAGGCCCTTTCGGGGGGAAAGACGGGACGTACATGACAGCATCTAAGAT
CAAGGATCGGCTCAACTACGAGACAGAGAACAACGTGACCATCCTGGTGA
ACAAGGTGTCTTCGGACCCCGACAAGGCCGAAGTTTTGGGGAGGGGAGAG
CTCCAGCATCTAAGATCAAGGATCGGCTCAACTACGAGACAGAGAACAAC
GTGACCATCCTGGTGAACAAGGTGTCTTCGGACCCCGACAAGGCCGAAGT
TTTGGGGAGGGGAGAGCTCCAGCTGGGCATCCTTATCGAGAACATGCGGC
GGGAAGGGTACGAGTTTTGTGTGTCGCCGCCAAGGGTGCTCACCACGGAG
GACGAGGAGGGGAACAAGCTAGAGCCCATCGAAGAGGTGCTGGGCATCCT
TATCGAGAACATGCGGCGGGAAGGGTACGAGTTTTGTGTGTCGCCGCCAA
GGGTGCTCACCACGGAGGACGAGGAGGGGAACAAGCTAGAGCCCATCGAA
GAGGTG
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