mRNA_Ecto-sp9_F_contig11408.1211.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: MBipA, (mitochondrial GTPase BipA/TypA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD8_ECTSI) HSP 1 Score: 484 bits (1247), Expect = 2.280e-166 Identity = 246/251 (98.01%), Postives = 246/251 (98.01%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGNKLEPIEEV 753
WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVE GKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGP GGKDGTYMTASKIKDRL YETENNVTILVN VSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGN LEPIEEV
Sbjct: 228 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEAGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPLGGKDGTYMTASKIKDRLTYETENNVTILVNNVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGNTLEPIEEV 478
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: MBipA, (mitochondrial GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C927_9STRA) HSP 1 Score: 257 bits (657), Expect = 4.470e-78 Identity = 145/253 (57.31%), Postives = 175/253 (69.17%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEPSMRF--LLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGNKLEPIEEV 753
WAT LD A+ W K AP P++R LLD I E V PP + L EPFA+AVNNIG+D +LG L TGK+ SGV+ VG + L R G Q P KVA++FVTRG TREPL +AGAGDI+T+AG VGDTI A G + PL TP + PPTL+M FG N GP GG +G+ +TAS I+ RL ETENNVT+ V + +D DK +V GRGE+QLGILIE +RREG+EF VSPPRVLT E+G LEP EEV
Sbjct: 217 WATTHLDNAVVWSK-APPPALRMEALLDAILEHVPPPCGAAALEEPFALAVNNIGADNFLGPLTTGKVESGVLRVGAMARWLAR-DGQSQGAPAKVAQVFVTRGTTREPL-IGAAGAGDIVTIAGIGGAVGDTITAAEGGVDAPLATPPLPPPTLSMTFGANDGPLGGTEGSTLTASAIRARLERETENNVTLRVAQCVTDVDKVDVFGRGEMQLGILIETLRREGFEFVVSPPRVLTAVGEQGEALEPYEEV 466
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCW0_9STRA) HSP 1 Score: 246 bits (629), Expect = 5.170e-74 Identity = 144/261 (55.17%), Postives = 177/261 (67.82%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEP---------SMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEE-GNKLEPIEEV 753
WATED+D A+ W K E +M LLD I TV PP + L +P A AVN+IG+D+Y+GRLATGKI +GV+ +G ++ L + G SG +V ++ TRGV R L AGAGDI+TVAG DC VGDTI +G +PL TP +AP TL+MVFG N P GG++GT++T++KIKDRL ETENNVTI V V + +K EV GRGELQLGILIENMRREGYE CVSPP+V+ T DEE G LEP EEV
Sbjct: 201 WATEDVDLAMEWSKMKREDRPKEGHGAANMVALLDCIVSTVPPP-SSAALEQPLAFAVNSIGTDSYVGRLATGKIEAGVMSIGTDIRVLQQDGTPGASG--RVTAVYGTRGVERVAL-EGPAGAGDIVTVAGVDCGVGDTITTVKDGVAEPLATPPIAPSTLSMVFGTNDSPLGGREGTHVTSTKIKDRLIRETENNVTISVAPVPGESEKMEVRGRGELQLGILIENMRREGYELCVSPPQVILTRDEETGQVLEPFEEV 457
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYA7_9STRA) HSP 1 Score: 200 bits (509), Expect = 4.720e-57 Identity = 129/281 (45.91%), Postives = 163/281 (58.01%), Query Frame = 1
Query: 7 TEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPY------DESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGR----LGGGEQSGPHKVAELFVTRGVTREPLGASS-------------------AGAGDIITVAGA--DCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEE-GNKLEPIEEV 753
T D D+A+S E +M LL+ + + + P DE+ + FAM +G D YLGRL TG+I SG V+ SV L R S P +A +FV RG+ R L SS AGDI+T+AG VGDT+ A + P+ TP +APPTL++ FG N+GP GK+GT +TAS+++DRL ET+NNVT+LV K SD +K V GRGELQ+GILIE MRREGYEF VSPPR+LTT DEE G KLEP EEV
Sbjct: 98 TSDCDEALS-----NEANMTVLLNAMMDYIPEPRIHTFDDDENNSTSTFAMTATTVGYDQYLGRLCTGRIFSGSVKANDSVVVLPRDDTENSQSSYSAPSNIAGIFVNRGIARTALETSSPSLQQQSEDNDDATNHQVITSAGDIVTLAGIPDSMKVGDTLTSAAQPIRKPIDTPPLAPPTLSVDFGANSGPLSGKEGTIITASRVRDRLYKETDNNVTLLVTKSESDAEKTVVFGRGELQIGILIEQMRREGYEFTVSPPRILTTTDEETGAKLEPYEEV 373
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Tr-type (G domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRE5_BRELC) HSP 1 Score: 192 bits (488), Expect = 1.580e-54 Identity = 122/252 (48.41%), Postives = 159/252 (63.10%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGN-KLEPIEEV 753
WA DLD P SM LLD I V P E+ +PFAMAV IG D Y+GRLATG+I +G V++G S++ + R +SG +V ++FVTRGV + + SA AGDIIT+AG + V DTIA DP+P+P + PPT++M FGVN P GK+G ++T+S IK RL E ENNV I ++ S+ + +V GRGELQL ILIE MRREG+E +S P+V+ +D E N KLEPIEEV
Sbjct: 82 WAVHDLDNT-----DEPHDSMMPLLDEILRYV--PAPEANADKPFAMAVTMIGHDPYVGRLATGRIHAGTVKIGDSIQVMNRESKKLESG--RVTKMFVTRGVVKSEV--KSATAGDIITIAGVNAYVSDTIADV--SVTDPIPSPQLDPPTISMTFGVNDAPNAGKEGKFLTSSHIKQRLERECENNVAISISP-SASSEAFDVHGRGELQLAILIEEMRREGFEMSISAPQVIFQKDPETNQKLEPIEEV 319
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCP3_PYTOL) HSP 1 Score: 194 bits (493), Expect = 2.420e-54 Identity = 124/252 (49.21%), Postives = 161/252 (63.89%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVL-TTEDEEGNKLEPIEEV 753
WA DLD P+ +M+ LLD I + V P E+ + PFAMAV IG D Y+GRLATG++ SG +++G +++ L +SG KV +LFVT+GV R + SA AGDIIT+AG + V DTI C E E P+P+P + PPT++M FGVN P GK+G ++T+S IK+RL+ E ENNV I + S + V GRGELQL ILIE MRREG+E CVS P+VL T+ E KLEPIEEV
Sbjct: 206 WAVRDLDD-----DGEPKTNMKALLDQIIDYV--PRPEADTTAPFAMAVTMIGHDPYVGRLATGRVSSGSIKIGDTIQVLNLESKKLESG--KVTKLFVTKGVARTEV--DSATAGDIITLAGVNAYVSDTI-CNPEVSE-PIPSPQLDPPTISMTFGVNDSPIAGKEGKFLTSSHIKERLHRECENNVAISITN-SESSEAFNVHGRGELQLAILIEEMRREGFEMCVSAPQVLFKTDSETKQKLEPIEEV 443
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Tr-type (G domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024FYA2_9STRA) HSP 1 Score: 191 bits (484), Expect = 4.530e-53 Identity = 122/252 (48.41%), Postives = 159/252 (63.10%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTE-DEEGNKLEPIEEV 753
WA ++D K E SM+ LLD I V PP + + PFAM+V IG D Y+GRL TG+I G V++G S++ + R ++G KV +LFVTRGV++ + A AGDI+T+AG + V DT+ C E +PTP + PPT++M FGVN P G+DG Y+T+S IKDRL ETENNV I ++K S + +V GRGELQL ILIE MRREG+E CVS PRVL + + KLEPIEEV
Sbjct: 202 WAVREVDST----KEKRE-SMKVLLDEIIAYVPPPTADP--NAPFAMSVTMIGHDPYVGRLVTGRIYGGAVKIGDSIQVINRDDKRLETG--KVTKLFVTRGVSKSEV--QHASAGDIVTLAGVNAFVSDTV-CNPSVNES-IPTPKLDPPTISMTFGVNDSPIAGQDGKYLTSSHIKDRLTRETENNVAISISK-SDSSEAFDVHGRGELQLAILIEEMRREGFEMCVSAPRVLFKQCPDTKQKLEPIEEV 439
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: GTP-binding (protein TypA/BipA n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVH4_9STRA) HSP 1 Score: 192 bits (489), Expect = 5.010e-53 Identity = 123/252 (48.81%), Postives = 158/252 (62.70%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEE-GNKLEPIEEV 753
WA LD ++ SM+ LLD I + V PP + LS PF+MAV +G D Y+GRLATG + SG V+VG ++ + R G +SG KV ++FVT+G T+ + SA AGDIITVAG + V DTIA +P+P + PPT++M FGVN P GK+G ++T+ IK+RL ETENNV I V S + V GRGELQL ILIE MRREG+E CVS PRVL + E+ NKLEP+EEV
Sbjct: 193 WAVNSLDD-----ESESRTSMKALLDQIVDYVPPPQVD--LSSPFSMAVTMLGHDPYVGRLATGLVHSGTVKVGDAIHVIDRDGKKLESG--KVTKMFVTKGTTKSEI--QSAEAGDIITVAGVNAYVSDTIANPEVVTS--IPSPQLDPPTISMTFGVNDSPIAGKEGKFLTSGHIKERLMRETENNVAISVTN-SETSESFNVHGRGELQLAILIEEMRREGFEMCVSAPRVLFKQCEDTNNKLEPVEEV 430
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Tr-type (G domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XGW1_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.120e-52 Identity = 122/252 (48.41%), Postives = 157/252 (62.30%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGN-KLEPIEEV 753
WA LD + SM+ LLD I + V P +S ++PF+MAV +G D Y+GRLATG++ +G V+VG + + R G +SG K+ +LFVTRG T+ + + A AGDIITVAG + V DTIA +P+P + PPT++M FGVN P GK+G ++T+ IK+RL ETENNV I V S + V GRGELQL ILIE MRREG+E CVS PRVL DEE N KLEP+EEV
Sbjct: 198 WAVNSLDD-----DSEDRTSMKALLDQIIDYVPAPEADS--AKPFSMAVTMLGHDPYVGRLATGRVHTGRVKVGDPIHVVNRDGQKLESG--KITKLFVTRGTTKSEI--TEAEAGDIITVAGVNAYVSDTIANPEVLMS--IPSPQLDPPTISMTFGVNDSPIAGKEGKFLTSGHIKERLQRETENNVAISVT-ASETSEAFNVHGRGELQLAILIEEMRREGFEMCVSAPRVLFKHDEETNQKLEPVEEV 435
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Match: Tr-type (G domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YK89_PHYSP) HSP 1 Score: 188 bits (477), Expect = 4.420e-52 Identity = 120/252 (47.62%), Postives = 160/252 (63.49%), Query Frame = 1
Query: 1 WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNNIGSDTYLGRLATGKIVSGVVEVGKSVKTLGRLGGGEQSGPHKVAELFVTRGVTREPLGASSAGAGDIITVAGADCCVGDTIACAVEGREDPLPTPGVAPPTLAMVFGVNTGPFGGKDGTYMTASKIKDRLNYETENNVTILVNKVSSDPDKAEVLGRGELQLGILIENMRREGYEFCVSPPRVLTTEDEEGN-KLEPIEEV 753
WA DLD + SM LLD I V P ++ S+PFAMAV IG D Y+GRLATG++ +G V++G S++ + R ++G +V ++FVTRGV + + +SA AGDIIT+AG + V DTIA +P+P+P + PPT++M FGVN P GKDG ++T+S IK RL E ENNV I ++ S+ + +V GRGELQL ILIE MRREG+E VS P+V+ D E N KLEPIEEV
Sbjct: 208 WAVHDLDN-----EGEARDSMLPLLDEITRYVPAPNTDA--SKPFAMAVTMIGHDPYVGRLATGRVHAGTVKIGDSIQVMNRDSKKLETG--RVTKMFVTRGVAKSEI--TSATAGDIITIAGVNAYVSDTIADV--NVTEPIPSPQLDPPTISMTFGVNDAPTAGKDGKFLTSSHIKQRLERECENNVAISISP-STSSEAFDVHGRGELQLAILIEEMRREGFEMSVSAPQVIFKTDPETNQKLEPIEEV 445 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11408.1211.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11408.1211.1 >prot_Ecto-sp9_F_contig11408.1211.1 ID=prot_Ecto-sp9_F_contig11408.1211.1|Name=mRNA_Ecto-sp9_F_contig11408.1211.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=251bp WATEDLDQAISWCKTAPEPSMRFLLDHIAETVRPPYDESMLSEPFAMAVNback to top mRNA from alignment at Ecto-sp9_F_contig11408:113..3631- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11408.1211.1 ID=mRNA_Ecto-sp9_F_contig11408.1211.1|Name=mRNA_Ecto-sp9_F_contig11408.1211.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3519bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11408:113..3631- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11408:113..3631- >mRNA_Ecto-sp9_F_contig11408.1211.1 ID=mRNA_Ecto-sp9_F_contig11408.1211.1|Name=mRNA_Ecto-sp9_F_contig11408.1211.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1506bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11408:113..3631- (Ectocarpus species9 EcSCA_722f female)back to top |