mRNA_Ecto-sp9_F_contig11403.1210.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11403.1210.1
Unique NamemRNA_Ecto-sp9_F_contig11403.1210.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11403.1210.1 vs.
Match: ORC3_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ2_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.870e-51
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:   10 ARVGFPMDRLSPSAVRQLSPENFHFPSSVECVDVLYEKLFVQRRLPVWMGGRLLSWMKATFDDTHLSLGMFSRQVILAAFLHFNRPAS 273
            ARVGFPMDRLSPSAVRQLSPENFHFPSSVECVD+LYEKLFVQRRLPVWMGGRLLSWMKATFDDTHLSLGMFSRQVI+AAFLHFNRPAS
Sbjct:  324 ARVGFPMDRLSPSAVRQLSPENFHFPSSVECVDLLYEKLFVQRRLPVWMGGRLLSWMKATFDDTHLSLGMFSRQVIVAAFLHFNRPAS 411
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BLAST of mRNA_Ecto-sp9_F_contig11403.1210.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC7_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.910e-49
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:   10 ARVGFPMDRLSPSAVRQLSPENFHFPSSVECVDVLYEKLFVQRRLPVWMGGRLLSWMKATFDDTHLSLGMFSRQVILAAFLHFNRPAS 273
            ARVGFPMDRLSPSAVRQLSPENF+FPSSVEC+D+LYEKLFVQRRLPVWMGGRLLSWMK TFDDTHLSLGMFSRQVI+AAFLHFNRPAS
Sbjct:  323 ARVGFPMDRLSPSAVRQLSPENFYFPSSVECIDLLYEKLFVQRRLPVWMGGRLLSWMKTTFDDTHLSLGMFSRQVIMAAFLHFNRPAS 410
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11403.1210.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
ORC3_N2.870e-5197.73domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.910e-4994.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11403contigEcto-sp9_F_contig11403:1561..3135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11403.1210.1prot_Ecto-sp9_F_contig11403.1210.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11403 1561..3108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928389.2323647-CDS-Ecto-sp9_F_contig11403:1560..16021622928389.2323647-CDS-Ecto-sp9_F_contig11403:1560..1602Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11403 1561..1602 -
1692277855.5974803-CDS-Ecto-sp9_F_contig11403:1560..16021692277855.5974803-CDS-Ecto-sp9_F_contig11403:1560..1602Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11403 1561..1602 -
1622928389.2476528-CDS-Ecto-sp9_F_contig11403:2638..27341622928389.2476528-CDS-Ecto-sp9_F_contig11403:2638..2734Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11403 2639..2734 -
1692277855.605566-CDS-Ecto-sp9_F_contig11403:2638..27341692277855.605566-CDS-Ecto-sp9_F_contig11403:2638..2734Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11403 2639..2734 -
1622928389.258761-CDS-Ecto-sp9_F_contig11403:3000..31081622928389.258761-CDS-Ecto-sp9_F_contig11403:3000..3108Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11403 3001..3108 -
1692277855.6135492-CDS-Ecto-sp9_F_contig11403:3000..31081692277855.6135492-CDS-Ecto-sp9_F_contig11403:3000..3108Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11403 3001..3108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928389.2692943-UTR-Ecto-sp9_F_contig11403:3108..31351622928389.2692943-UTR-Ecto-sp9_F_contig11403:3108..3135Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11403 3109..3135 -
1692277855.6282616-UTR-Ecto-sp9_F_contig11403:3108..31351692277855.6282616-UTR-Ecto-sp9_F_contig11403:3108..3135Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11403 3109..3135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11403.1210.1

>prot_Ecto-sp9_F_contig11403.1210.1 ID=prot_Ecto-sp9_F_contig11403.1210.1|Name=mRNA_Ecto-sp9_F_contig11403.1210.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=82bp
MDRLSPSAVRQLSPENFHFPSSVECVDVLYEKLFVQRRLPVWMGGRLLSW
MKATFDDTHLSLGMFSRQVILAAFLHFNRPAS
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mRNA from alignment at Ecto-sp9_F_contig11403:1561..3135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11403.1210.1 ID=mRNA_Ecto-sp9_F_contig11403.1210.1|Name=mRNA_Ecto-sp9_F_contig11403.1210.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1575bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11403:1561..3135- (Ectocarpus species9 EcSCA_722f female)
TTGCCGCAGGCTCGCGTGGGTTTCCCGATGGACAGGCTTTCTCCGTCAGC
GGTGAGGCAGCTATCTCCGGAGAACTTCCACTTCCCGTCGTCCGTGGAAT
GCGTCGACGTGCTCTACGAGAAGCTATTCGTACAGGTAAGGTACAGTGCA
GTGTTGTACTGTAAGGCGAATACTGTCCCTTTTTTTTTCGTGCAATCGGT
GTTCGATGCTGATTTTCTGTTGCTTGCCACGCACTTGCCCATTGATAATT
GTCTTTTCGGCCGTTTCGAATCGATGTCTTTTTTCCAGGCGGATAGATGT
ATACAGGACGAAAGTATTCGTATATTACTGATGTTCAACCCCGTTCATTT
CCCGAGAAATTCAACCGTGGAAAAACCGTCCCGTGGTACGTACTGTAACA
GCGCCGGCTGCCGGTGTGGATGGGAGGCCGCTTGCTCTCTTGGATGAAGG
CTACCTTCGACGACACTCACCTCTCTCTGGGGATGTTCTCCCGCCAGGTA
CTTATTGTATAGATTGTATAGGATATAGTGTGGTTAGAGTAATGCTTATA
TATTCCATGTTATCTAGGCTGTAGTATCACACTAAAGAACCCATATAATA
ACATGGTACCGTAGGTGACGTAAGATAACACACACCCCCCGAACCGATTT
TCAAAAACTCGACCTCATACTCTACAGTCGGAAGAGTGGCGGCGTCGAGA
AACGGCGGCGTTTCAACCGTCTCGTCGAAAACATCAAATTTGATCTTTCC
GAAAACGTAAAATTTGATACAGAACGCGCCACCCCTTAAGATGAACCTCC
AAGTATTGGTCGAGGCTGGGGTTGTTAGGTCCTGGGGTCATGCTACGAAT
GGTCGCTTTACTGGTTTTAACGAAATCAAATGGCAATTTTTCTGAAAGCT
CGCTCTCGACGAGACAGAGTTCCAACGCCGAAAATACCGTAGGTTTGCAT
AACATACCACACAACGTGGACCGAATTTCAAACGTCTACACACAGAACCT
GTATTATAGTTTCGGCCAAGGGTGGGGTTGTTACCGTATTCCTAGGGTCA
TGCTACGAATGGTCGCTATATACAGGTTTTAGTGTAGGGGCTCTTAACCG
AGCTCACAGATGGTGCTCAGGTTCTTTAACCTTGATTTCTTGGGGGCTCA
ATTTCTTAACTCTGGGTTCGTATGTGCGGGCGCGTCCTGTAACATGGTAA
CCATCGTGCGGTTGTTCACGGTGCAACCGTAGGTTGCATACGTAAGATAT
CGCACCTACTGGACCGATTTTCGAAGCTCGATTGCTCGGCAGGAAAAGCG
GTGACGGTGCCGAAAATTGCGGCGTTGGAACCGTCTCGTCGAGAGCTTTC
CGCTTTCCGAAACCCATGTGGTCGTTGAATTTCACTTTCTATTTTTTTTT
TGTGGTGATGTCGAAGGCTATATCGTTTTCGTTCATTTTGCAAAAAAAAT
GGCAGCGCTAGAGAGCACGTCTTCAAAATGTTTCCAGTGCGTTGTTGTGT
ATTTCTCTTTTCTGTCTCTTTTGTTGTGTCCAGGTGATCTTGGCTGCCTT
CCTACACTTCAACCGCCCGGCGAGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11403:1561..3135-

>mRNA_Ecto-sp9_F_contig11403.1210.1 ID=mRNA_Ecto-sp9_F_contig11403.1210.1|Name=mRNA_Ecto-sp9_F_contig11403.1210.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11403:1561..3135- (Ectocarpus species9 EcSCA_722f female)
ATGGACAGGCTTTCTCCGTCAGCGGTGAGGCAGCTATCTCCGGAGAACTT
CCACTTCCCGTCGTCCGTGGAATGCGTCGACGTGCTCTACGAGAAGCTAT
TCGTACAGATGGACAGGCTTTCTCCGTCAGCGGTGAGGCAGCTATCTCCG
GAGAACTTCCACTTCCCGTCGTCCGTGGAATGCGTCGACGTGCTCTACGA
GAAGCTATTCGTACAGCGCCGGCTGCCGGTGTGGATGGGAGGCCGCTTGC
TCTCTTGGATGAAGGCTACCTTCGACGACACTCACCTCTCTCTGGGGATG
TTCTCCCGCCAGCGCCGGCTGCCGGTGTGGATGGGAGGCCGCTTGCTCTC
TTGGATGAAGGCTACCTTCGACGACACTCACCTCTCTCTGGGGATGTTCT
CCCGCCAGGTGATCTTGGCTGCCTTCCTACACTTCAACCGCCCGGCGAGT
GTGATCTTGGCTGCCTTCCTACACTTCAACCGCCCGGCGAGT
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