mRNA_Ecto-sp9_F_contig11402.1209.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11402.1209.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI) HSP 1 Score: 533 bits (1372), Expect = 1.360e-171 Identity = 343/353 (97.17%), Postives = 346/353 (98.02%), Query Frame = 1
Query: 16 PPRALQVRYADFIKLDVGMPARRPPDDVLRRVEELDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWLKETPRLRWLARALRDSVAERVWAPXXXXXXXXXXXXXXXXXXXX-GSGGVEAMKLLLEDLAHSYQGRRESARRALQSVLAXXXXXXXXXXXGSGRVAWTPVRGRRGGEGEGGEERVVVLQEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLDLFAE 1071
PP A + RYADFIKLDVGMP R PP DVLRRVE+LDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWLKETPRLRWLARALRDSVAERVWAPXXXXXXXXXXXXXXXXXXXX GSGGVEAMKLLLEDLAHSYQGRRESARRALQSVLAXXXXXXXXXXXGSGRVAWTPVRGRRGGEGEGGEERVVVLQEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGL+LFAE
Sbjct: 218 PPGAPEGRYADFIKLDVGMPGRGPPQDVLRRVEKLDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWLKETPRLRWLARALRDSVAERVWAPXXXXXXXXXXXXXXXXXXXXXGSGGVEAMKLLLEDLAHSYQGRRESARRALQSVLAXXXXXXXXXXXGSGRVAWTPVRGRRGGEGEGGEERVVVLQEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLNLFAE 570
BLAST of mRNA_Ecto-sp9_F_contig11402.1209.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE) HSP 1 Score: 459 bits (1182), Expect = 3.030e-144 Identity = 338/491 (68.84%), Postives = 340/491 (69.25%), Query Frame = 1
Query: 16 PPRALQVRYADFIKLDVGMPARRPPDDVLRRVEELDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWL--------------------------------------------------------------------------------------------------------------------------------------KETPRLRWLARALRDSVAERVWAPXXXXXXXXXXXXXXXXXXXXG-SGGVEAMKLLLEDLAHSYQGRRESARRALQSVLAXXXXXXXXXXXG----SGRVAWTPVRGRRGGEGEGGEERVVVLQEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLDLFAE 1071
PP A +VRYADFIKLDVGMPARRPPDDVLRRVEELDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWL KETPRLRWLARALRDSVAERVWAPXXXXXXXXXXXXXXXXXXXX +GGVEAMKLLLEDLAHSYQGRRESARRALQSVL XXXXXXXXXXX SGRVAWTPVRGRRGGEGEG EERVVVLQEEADREQCGWLFCCQ LPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLD ITRQQA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SRR VAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLDLFAE
Sbjct: 1429 PPGAPEVRYADFIKLDVGMPARRPPDDVLRRVEELDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWLVSAVASEPDALLRRLPLAVTVHLLLLACYQAYEEDHARRTKEVVSASTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAANEAAEAVGATRGTGWAGLFDGPPRSGGGDGSGGRASGLKKETPRLRWLARALRDSVAERVWAPXXXXXXXXXXXXXXXXXXXXXXNGGVEAMKLLLEDLAHSYQGRRESARRALQSVLXXXXXXXXXXXXXXXXXSGRVAWTPVRGRRGGEGEGAEERVVVLQEEADREQCGWLFCCQRLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDRITRQQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SRRRVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLDLFAE 1917
BLAST of mRNA_Ecto-sp9_F_contig11402.1209.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U3_9STRA) HSP 1 Score: 123 bits (308), Expect = 5.400e-27 Identity = 113/373 (30.29%), Postives = 153/373 (41.02%), Query Frame = 1
Query: 34 VRYADFIKLDVGMPARRPPDDVLRRVEELDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWLKET----PRLRWLARALRDSVAERV---------------------------W--APXXXXXXXXXXXXXXXXXXXXGSGGVEAMKLLLEDLAHSYQGRRESARRALQSVLAXXXXXXXXXXXGSGRVAW---TPVRGRRGGEGEGGEERVVVLQEEA---DREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALR 1035
V YADF+ LD+ PAR PP +VL++V LD E+GLGA LRRC PDFIT V AGSDP+RV R+S E SA WL P + + R L VA ++ W A + A++LL DL HS RR +AR L++VL+ G+G +A +G + + V EA + E+C WL C++LP W A V A+R ++ ETS P+R+ L+ L +A + G AG+ F LC L+ R MVA+ TL+ E LA V LR
Sbjct: 1074 VFYADFVALDLSGPARSPPPEVLKQVGLLDAELGLGARLRRCKDPDFITAVAAGSDPQRVTRDSAESSAEWLVSALAAEPEV--ILRRLPLDVAAQLALMAHLAAPAGAXXXXXXXXXXXXXSDWQAALRRTLAPHLLGRVARAAWGTDPAAAARALELLATDLGHSDGRRRAAARSTLRAVLSRRHGGAAD---GAGTLAMDVDAVEEEEQGPQAPAAVKAAAVAGGEAAAAEAEECEWLLACEALPCWGDAAAAVNRALRVALAVETSVRPMRWYLVALQRFLGDRAG--------------------------------PQAGGAGEAA-VFCRTLCDLVCTRPMVAAATLRSDAEVAALARRHVTHTLR 1408
BLAST of mRNA_Ecto-sp9_F_contig11402.1209.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U910_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.030e-7 Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 49 FIKLDVGMPARRPPDDVLRRVEELDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWL 249
I LD+ MP R PP DV+ R++ L+ E G+GA LRR T PDF+ +AG V R + + WL
Sbjct: 109 LIFLDLSMPPRTPPADVIERLKALNAEFGIGARLRRATEPDFVAAAIAGDGSRGVSRRMLMTTMEWL 175
BLAST of mRNA_Ecto-sp9_F_contig11402.1209.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCY3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.070e-7 Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 49 FIKLDVGMPARRPPDDVLRRVEELDREMGLGAELRRCTHPDFITQVVAGSDPERVGRESVERSAPWL 249
I LD+ MP R PP DV+ R++ L+ E G+GA LRR T PDF+ +AG V R + + WL
Sbjct: 726 LIFLDLSMPPRTPPADVIERLKALNAEFGIGARLRRATEPDFVAAAIAGDGSRGVSRRMLVTTMEWL 792 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11402.1209.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11402.1209.1 >prot_Ecto-sp9_F_contig11402.1209.1 ID=prot_Ecto-sp9_F_contig11402.1209.1|Name=mRNA_Ecto-sp9_F_contig11402.1209.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=357bp MITPPPPRALQVRYADFIKLDVGMPARRPPDDVLRRVEELDREMGLGAELback to top mRNA from alignment at Ecto-sp9_F_contig11402:69..3024+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11402.1209.1 ID=mRNA_Ecto-sp9_F_contig11402.1209.1|Name=mRNA_Ecto-sp9_F_contig11402.1209.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2956bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11402:69..3024+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11402:69..3024+ >mRNA_Ecto-sp9_F_contig11402.1209.1 ID=mRNA_Ecto-sp9_F_contig11402.1209.1|Name=mRNA_Ecto-sp9_F_contig11402.1209.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2142bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11402:69..3024+ (Ectocarpus species9 EcSCA_722f female)back to top |