mRNA_Ecto-sp9_F_contig114.1203.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK32_9PHAE) HSP 1 Score: 209 bits (533), Expect = 5.140e-60 Identity = 118/147 (80.27%), Postives = 118/147 (80.27%), Query Frame = 2
Query: 2 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT 442
ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQ LNTALFNELSTYRAEMS QTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT
Sbjct: 464 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQ----------------------------LNTALFNELSTYRAEMSKQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT 582
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ25_9STRA) HSP 1 Score: 166 bits (420), Expect = 8.460e-45 Identity = 88/147 (59.86%), Postives = 106/147 (72.11%), Query Frame = 2
Query: 2 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT 442
+TVGEIVN MQ+DAGR+E L +H +WDS+ Q+ GY+VLL LGP AG VM LIP+NT F LS YR +M TD RVK VNEMLQGIRAIKFYNWE PF+ ++E IH+ EL I R+V RS +VSVLS+TPA V+ VT
Sbjct: 287 STVGEIVNLMQLDAGRVETLVTCLHPLWDSLLQIVGYSVLLWNTLGPCAAAGFAVMASLIPINTQFFKRLSAYRQQMLLHTDQRVKGVNEMLQGIRAIKFYNWEGPFKNKIESIHNKELDILTRSVQLRSALVSVLSSTPAFVVVVT 433
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: Multidrug-resistance (like protein isoform q (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSU3_NANGC) HSP 1 Score: 133 bits (335), Expect = 2.370e-34 Identity = 73/147 (49.66%), Postives = 96/147 (65.31%), Query Frame = 2
Query: 2 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT 442
+TVGEIVN MQ+DA RLE +A SVHT+W+ + + Y +L+ C+GPS+LAGI +M +IPLN L+ R TD RVKL NE+LQGIR+IK Y WETPF ++VE + ELS A R ++V+ L TP+IV VT
Sbjct: 173 STVGEIVNMMQLDAARLEGVASSVHTLWNGLLDIVVYMAMLVACMGPSMLAGILIMASVIPLNAVFLGILAKARERTLKSTDSRVKLTNEVLQGIRSIKSYAWETPFLKQVEAVRAQELSTIMSAAKLRGVLVAFLGATPSIVSMVT 319
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: Multidrug (resistance-associated protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3C1_9STRA) HSP 1 Score: 133 bits (335), Expect = 2.260e-33 Identity = 73/147 (49.66%), Postives = 96/147 (65.31%), Query Frame = 2
Query: 2 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT 442
+TVGEIVN MQ+DA RLE +A SVHT+W+ + + Y +L+ C+GPS+LAGI +M +IPLN L+ R TD RVKL NE+LQGIR+IK Y WETPF ++VE + ELS A R ++V+ L TP+IV VT
Sbjct: 387 STVGEIVNMMQLDAARLEGVASSVHTLWNGLLDIVVYMAMLVACMGPSMLAGILIMASVIPLNAVFLGILAKARERTLKSTDSRVKLTNEVLQGIRSIKSYAWETPFLKQVEAVRAQELSTIMSAAKLRGVLVAFLGATPSIVSMVT 533
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQY4_9STRA) HSP 1 Score: 133 bits (335), Expect = 2.320e-33 Identity = 73/147 (49.66%), Postives = 96/147 (65.31%), Query Frame = 2
Query: 2 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT 442
+TVGEIVN MQ+DA RLE +A SVHT+W+ + + Y +L+ C+GPS+LAGI +M +IPLN L+ R TD RVKL NE+LQGIR+IK Y WETPF ++VE + ELS A R ++V+ L TP+IV VT
Sbjct: 366 STVGEIVNMMQLDAARLEGVASSVHTLWNGLLDIVVYMAMLVACMGPSMLAGILIMASVIPLNAVFLGILAKARERTLKSTDSRVKLTNEVLQGIRSIKSYAWETPFLKQVEAVRAQELSTIMSAAKLRGVLVAFLGATPSIVSMVT 512
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: Uncharacterized (protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y9D9_BRAFL) HSP 1 Score: 115 bits (287), Expect = 6.780e-27 Identity = 58/123 (47.15%), Postives = 80/123 (65.04%), Query Frame = 2
Query: 2 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFR 370
+TVGEIVN M +DA R +L+ +H IW + FQ+ L LGPS+LAG+GVMILLIP+N + N+ + + Q D R+KL+NE+L GI+ +K Y WE F+E++EKI EL I R
Sbjct: 422 STVGEIVNLMSVDAQRFMDLSTYLHMIWSAPFQIAVSLYFLWQTLGPSILAGLGVMILLIPINIVMANKTKQLQVKQMIQKDARIKLMNEVLNGIKVLKLYAWELSFKEKIEKIRSKELQILR 544
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: ABC (transmembrane type-1 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIV0_9RHOD) HSP 1 Score: 114 bits (284), Expect = 1.650e-26 Identity = 66/146 (45.21%), Postives = 89/146 (60.96%), Query Frame = 2
Query: 5 TVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT 442
T GE+VN+MQ+DA RL + H +W ++ Q+ G LL++ LG S L G +L +PL L LS +R TD RVKL+NEM QGI+A+KFY WE PF +V +I + EL+ +RR V R+L VL TP +V AVT
Sbjct: 511 TTGEVVNHMQLDAQRLSDFMQYAHVLWAALLQIGGALALLVVYLGYSGLIGFVAALLTVPLQGYLVKRLSAFRRLTFGITDRRVKLLNEMFQGIKALKFYAWEDPFAGKVTEIREQELAAYRRTVLVRTLFYVVLFVTPVLVSAVT 656
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: ABC-type (glutathione-S-conjugate transporter n=25 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XU63_BRABE) HSP 1 Score: 113 bits (283), Expect = 2.300e-26 Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 2
Query: 2 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFR 370
+TVGEIVN M +DA R +L +H IW + FQ+ L LGPS+LAG+GVMILLIP+N + N+ + + + D R+KL+NE+L GI+ +K Y WE F+E++EKI EL I R
Sbjct: 317 STVGEIVNLMSVDAQRFMDLCTYLHMIWSAPFQIAVSLYFLWQTLGPSILAGLGVMILLIPINAVMANKTKQLQVKQMKEKDSRIKLMNEVLNGIKVLKLYAWELSFKEKIEKIRSKELQILR 439
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: Probable (ATP-dependent transporter ycf16 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P980_PORUM) HSP 1 Score: 113 bits (283), Expect = 2.310e-26 Identity = 59/146 (40.41%), Postives = 91/146 (62.33%), Query Frame = 2
Query: 5 TVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRAVTKRSLVVSVLSTTPAIVIAVT 442
TVGEIVNYMQ+DA R+ + A +H W + Q+ VLL + +GPS G+ + ++ IPL + L + + R TD RVKL+NE+LQGI+A+KFY WE PF ++++ + EL+ +R ++ RS + ++ T P I+ VT
Sbjct: 263 TVGEIVNYMQLDAQRISDFAQFIHVTWAAPIQVIVTVVLLYIYIGPSAFVGLAMAVVTIPLQSWLVKKQAALRKRGVGITDQRVKLINEVLQGIKAVKFYAWEKPFSAAIDEVRERELANYRASILVRSSFLVIIMTVPTIIAVVT 408
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Match: multidrug (resistance-associated protein 1-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016017046) HSP 1 Score: 113 bits (282), Expect = 3.150e-26 Identity = 55/125 (44.00%), Postives = 82/125 (65.60%), Query Frame = 2
Query: 2 ATVGEIVNYMQIDAGRLENLAGSVHTIWDSVFQMTGYTVLLLLCLGPSVLAGIGVMILLIPLNTALFNELSTYRAEMSTQTDLRVKLVNEMLQGIRAIKFYNWETPFRERVEKIHDAELSIFRRA 376
++VG+IVN M +DA RL +++ +H IW + FQ+ L LGPS++AG+GVMILLIP+N + N+ + + + D R+KL+NE+L GI+ +K Y WE F+E++EKI EL I R A
Sbjct: 422 SSVGQIVNLMSVDAQRLADVSTQLHMIWSAPFQIAVSLYFLWQTLGPSIMAGLGVMILLIPINAVIANKTRQLQVKQMKKKDARIKLMNEVLNGIKVLKLYAWELSFKEKIEKIRSKELQILRNA 546 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig114.1203.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig114.1203.1 >prot_Ecto-sp9_F_contig114.1203.1 ID=prot_Ecto-sp9_F_contig114.1203.1|Name=mRNA_Ecto-sp9_F_contig114.1203.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp RDGGRDRELHADRRGKAGELGRQRAHHLGLRFPDDRIHGAALALPRTFRPback to top mRNA from alignment at Ecto-sp9_F_contig114:51617..53800+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig114.1203.1 ID=mRNA_Ecto-sp9_F_contig114.1203.1|Name=mRNA_Ecto-sp9_F_contig114.1203.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2184bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:51617..53800+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig114:51617..53800+ >mRNA_Ecto-sp9_F_contig114.1203.1 ID=mRNA_Ecto-sp9_F_contig114.1203.1|Name=mRNA_Ecto-sp9_F_contig114.1203.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:51617..53800+ (Ectocarpus species9 EcSCA_722f female)back to top |