mRNA_Ecto-sp9_F_contig114.1202.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig114.1202.1
Unique NamemRNA_Ecto-sp9_F_contig114.1202.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig114.1202.1 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK32_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 7.390e-72
Identity = 128/132 (96.97%), Postives = 129/132 (97.73%), Query Frame = 2 
Query:    2 LMARGNKKAIAEEDLWEMPQDEQMQSVADAFEAAYAKESAADAAVHQGSDGQGKGSGSAVVTDEGIWRKRHPLVPGLLDTALMRSLYVLYRKPFLTAGALRFMNTSVQFLPAIFVQRLLRLLESGIAAGGAG 397
            LMARGNKKAIAEEDLWEMPQDEQMQSVADAFEAAYAKESAADAAVHQGSDGQGKG GSAVVT EGIWRKRHPLVPGLLDTALMRSLY+LYRKPFLTAGALRFMNTSVQFLPAI VQRLLRLLESGIAAGGAG
Sbjct:  273 LMARGNKKAIAEEDLWEMPQDEQMQSVADAFEAAYAKESAADAAVHQGSDGQGKGRGSAVVTGEGIWRKRHPLVPGLLDTALMRSLYLLYRKPFLTAGALRFMNTSVQFLPAILVQRLLRLLESGIAAGGAG 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig114.1202.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
ABC7.390e-7296.97protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig114contigEcto-sp9_F_contig114:49223..50903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size400
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig114.1202.1prot_Ecto-sp9_F_contig114.1202.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig114 49223..50903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928387.2886565-CDS-Ecto-sp9_F_contig114:49222..492621622928387.2886565-CDS-Ecto-sp9_F_contig114:49222..49262Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 49223..49262 +
1692277854.5958397-CDS-Ecto-sp9_F_contig114:49222..492621692277854.5958397-CDS-Ecto-sp9_F_contig114:49222..49262Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 49223..49262 +
1622928387.3020895-CDS-Ecto-sp9_F_contig114:50195..505151622928387.3020895-CDS-Ecto-sp9_F_contig114:50195..50515Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 50196..50515 +
1692277854.6076465-CDS-Ecto-sp9_F_contig114:50195..505151692277854.6076465-CDS-Ecto-sp9_F_contig114:50195..50515Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 50196..50515 +
1622928387.3152893-CDS-Ecto-sp9_F_contig114:50864..509031622928387.3152893-CDS-Ecto-sp9_F_contig114:50864..50903Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 50865..50903 +
1692277854.6157181-CDS-Ecto-sp9_F_contig114:50864..509031692277854.6157181-CDS-Ecto-sp9_F_contig114:50864..50903Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 50865..50903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig114.1202.1

>prot_Ecto-sp9_F_contig114.1202.1 ID=prot_Ecto-sp9_F_contig114.1202.1|Name=mRNA_Ecto-sp9_F_contig114.1202.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=133bp
ADGSREQEGHRRGGPVGDAARRTNAVRRGRLRSSVREGERRGRRRPPRVG
RPGEGQRLRGGHRRGYLEEASPPGAGAAGHGPDALAVRAVQEALPDGGGP
AVHEHVGAVSARYLRAAPAEASRVWHCSRGRGG
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mRNA from alignment at Ecto-sp9_F_contig114:49223..50903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig114.1202.1 ID=mRNA_Ecto-sp9_F_contig114.1202.1|Name=mRNA_Ecto-sp9_F_contig114.1202.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1681bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:49223..50903+ (Ectocarpus species9 EcSCA_722f female)
GCTGATGGCTCGAGGGAACAAGAAGGCCATCGCCGAGGAGGTGAGTTTTT
GCTTGTTTGCCTTTCTGACACCCCGGCAGTCGCCGTCACCTAGGTCCATC
ATGTACCAGAGTGTTTTGGAGTTTGTGTTTAGTCTCGGTAACGATCATCG
GACATGCTTCACAGCCAGTGTAGTTAAGTTGGGCACGGATAGCAGGATGC
ATTGTATCGGCACACTTTCCTACTAGCGCGTTTTGTTGCGAGCGGAGCTG
CCCACCACGCACGCTGCCTATGCGCGGACCCCACAGCGTGGCACATGCTG
GGATTGGTGTTGTCGTTGTTGTCGTCGTCTGTGTACCATCCAGCCTGTCC
TCCCCCCGTCCTATTCGAGGAGAATGAGTGTCCGTGGTCAAAGGGTACGA
CCTTGCCAAACGTTTAGTACTATAGTTTGTATTGTACCTGTCGCCCATCC
AGGCGATGCCACGACCGAACGTGATCGACGCAGCGAAAGACGCAATGCGA
AACCTCCTGCCGCCTCCAGTGCGTGTTTGCGCAGTATTGACCGTGACAGA
CACGATGTAAGCAGGCCACTGGACGCATCGCGGCATCCATCCTCCTCGCT
TCCTTCCCGCGGAAGTCGAGTGCAAATTCATCGACATTCAAGTCCGTTGT
TTTTTTTACGGGTATGCCGCAGTCGGGAATATCATGCGTGGACCTAAGGA
AGAGACACCTCACGATAAGCACGTGCCCGGCTAAAACCGCGAAGCGATTA
CATCTATATGCCGAATGTACAGATGAAAACACAGAAAGCCACATCACCAC
CCTCTCTACCCATCGGTGATCGTTCTTGTGGGAGCAATTCTCCGTCCTCT
CGAGGACGCGCGGTCGATGGTCTATCCTCTATATGGCATGCAAAACATGA
GTAGACCCACCCCTCTTTGCACAACCTTCCTTTACTGACCGCGCATATCT
CGACGAACACCCCCACAAACCAGGACCTGTGGGAGATGCCGCAAGACGAA
CAAATGCAGTCCGTCGCGGACGCCTTCGAAGCAGCGTACGCGAAGGAGAG
CGCCGCGGACGCCGCCGTCCACCAAGGGTCGGACGGCCAGGGGAAGGGCA
GCGGCTCCGCGGTGGTCACCGACGAGGGTATCTGGAGGAAGCGTCACCCC
CTGGTGCCGGGGCTGCTGGACACGGCCCTGATGCGCTCGCTGTACGTGCT
GTACAGGAAGCCCTTCCTGACGGCGGGGGCCCTGCGGTTCATGAACACGT
CGGTGCAGTTTCTGCCCGCTATCTTCGTGCAGCGCCTGCTGAGGTGTGTT
TGTTGTTGTCGTCGTCGTGCCGACTGATCTCGTCGGCGTTGTACCAGGCA
CTGCCAGATATTGAGCATTTTGACTTTTCCACCCGTGCCACGCGATTTCA
CCGGTTCTAGTACGCGGGACGCCGGCGCAACGGGAGCCCTCTTATTTTTG
CTCACCCGGGGCGGTAGGTAGGGCTTGAGTGGTGTAGGTGTGTCCGCACG
TACGCTTCTTGACGGCCCGCGTTCGCCTTTTCTTGTCTTTGGGGACTGGT
TGTTAGGAGCAGTCCTCCCCCGCAAACGCACACGCGCATCTAACGTGGAT
GTATGTTTCCTCGCTCCCTGCGCTTCGATGGAAAACGAAAAGGCTTCTCG
AGTCTGGCATTGCAGCCGGGGGCGCGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig114:49223..50903+

>mRNA_Ecto-sp9_F_contig114.1202.1 ID=mRNA_Ecto-sp9_F_contig114.1202.1|Name=mRNA_Ecto-sp9_F_contig114.1202.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:49223..50903+ (Ectocarpus species9 EcSCA_722f female)
GCTGATGGCTCGAGGGAACAAGAAGGCCATCGCCGAGGAGGCTGATGGCT
CGAGGGAACAAGAAGGCCATCGCCGAGGAGGACCTGTGGGAGATGCCGCA
AGACGAACAAATGCAGTCCGTCGCGGACGCCTTCGAAGCAGCGTACGCGA
AGGAGAGCGCCGCGGACGCCGCCGTCCACCAAGGGTCGGACGGCCAGGGG
AAGGGCAGCGGCTCCGCGGTGGTCACCGACGAGGGTATCTGGAGGAAGCG
TCACCCCCTGGTGCCGGGGCTGCTGGACACGGCCCTGATGCGCTCGCTGT
ACGTGCTGTACAGGAAGCCCTTCCTGACGGCGGGGGCCCTGCGGTTCATG
AACACGTCGGTGCAGTTTCTGCCCGCTATCTTCGTGCAGCGCCTGCTGAG
GACCTGTGGGAGATGCCGCAAGACGAACAAATGCAGTCCGTCGCGGACGC
CTTCGAAGCAGCGTACGCGAAGGAGAGCGCCGCGGACGCCGCCGTCCACC
AAGGGTCGGACGGCCAGGGGAAGGGCAGCGGCTCCGCGGTGGTCACCGAC
GAGGGTATCTGGAGGAAGCGTCACCCCCTGGTGCCGGGGCTGCTGGACAC
GGCCCTGATGCGCTCGCTGTACGTGCTGTACAGGAAGCCCTTCCTGACGG
CGGGGGCCCTGCGGTTCATGAACACGTCGGTGCAGTTTCTGCCCGCTATC
TTCGTGCAGCGCCTGCTGAGGCTTCTCGAGTCTGGCATTGCAGCCGGGGG
CGCGGGGGCGCTTCTCGAGTCTGGCATTGCAGCCGGGGGCGCGGGGGC
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