mRNA_Ecto-sp9_F_contig114.1201.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig114.1201.1
Unique NamemRNA_Ecto-sp9_F_contig114.1201.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig114.1201.1 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK32_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 5.930e-43
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    1 LECAMEDGRKGGRLRGRFRQVLDRMRGRAAAPPPVAVAAAGNQMMYDPGQHREEEAVDLASLRAGGNASSFNADAHCPTCRKQV 252
            LECAMED RKGG  RGRFRQVL++MRGRAAAPPPVAVAAAG+QMMYDPGQHREEEAVDL SLRAGGNAS+FNADAHCPTCRKQV
Sbjct:  171 LECAMEDDRKGGHSRGRFRQVLNKMRGRAAAPPPVAVAAAGSQMMYDPGQHREEEAVDLESLRAGGNASTFNADAHCPTCRKQV 254
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig114.1201.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
ABC5.930e-4390.48protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig114contigEcto-sp9_F_contig114:47880..48865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue3.3e-36
Seed eggNOG ortholog2880.D8LB41
KEGG koko:K05665,ko:K05666
KEGG TC3.A.1.208.2,3.A.1.208.8
KEGG Pathwayko01523,ko01524,ko02010,ko04071,ko04976,ko04977,ko05206,map01523,map01524,map02010,map04071,map04976,map04977,map05206
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig114.1201.1prot_Ecto-sp9_F_contig114.1201.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig114 47892..48865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928388.4168346-UTR-Ecto-sp9_F_contig114:47879..478911622928388.4168346-UTR-Ecto-sp9_F_contig114:47879..47891Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig114 47880..47891 +
1692277855.267937-UTR-Ecto-sp9_F_contig114:47879..478911692277855.267937-UTR-Ecto-sp9_F_contig114:47879..47891Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig114 47880..47891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928388.4432862-CDS-Ecto-sp9_F_contig114:47891..480291622928388.4432862-CDS-Ecto-sp9_F_contig114:47891..48029Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 47892..48029 +
1692277855.2797937-CDS-Ecto-sp9_F_contig114:47891..480291692277855.2797937-CDS-Ecto-sp9_F_contig114:47891..48029Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 47892..48029 +
1622928388.4642162-CDS-Ecto-sp9_F_contig114:48763..488651622928388.4642162-CDS-Ecto-sp9_F_contig114:48763..48865Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 48764..48865 +
1692277855.289644-CDS-Ecto-sp9_F_contig114:48763..488651692277855.289644-CDS-Ecto-sp9_F_contig114:48763..48865Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 48764..48865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig114.1201.1

>prot_Ecto-sp9_F_contig114.1201.1 ID=prot_Ecto-sp9_F_contig114.1201.1|Name=mRNA_Ecto-sp9_F_contig114.1201.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp
MEDGRKGGRLRGRFRQVLDRMRGRAAAPPPVAVAAAGNQMMYDPGQHREE
EAVDLASLRAGGNASSFNADAHCPTCRKQV
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mRNA from alignment at Ecto-sp9_F_contig114:47880..48865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig114.1201.1 ID=mRNA_Ecto-sp9_F_contig114.1201.1|Name=mRNA_Ecto-sp9_F_contig114.1201.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=986bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:47880..48865+ (Ectocarpus species9 EcSCA_722f female)
CTCGAGTGTGCGATGGAGGATGGCCGGAAGGGAGGCCGCTTACGGGGACG
CTTCCGACAGGTCTTGGACAGGATGAGAGGGCGTGCTGCTGCGCCACCGC
CTGTCGCCGTAGCAGCGGCGGGGAACCAGATGATGTACGACCCGGGTCAG
GTATGTGTCCCTTGTGTGTGTGTGTGTGTGTGCCGAGAGATACCCGCAAA
TGTTTCTTAGAGCGAGATTGGAGGCAGTGTATTTCGGGCCTTTGCCCTGT
ACGCGGCGGTGCACGTGCCATTGTTTTACGCGTCGGACATCGCTAGCGTG
CTACCCAGAGCACCAACAAGCAAAGTGTCGCTGTACACGAGAGACGTGTG
GGAAAGGCAGCAAGTATCGGCCTGGACTAGAATGCAACGCTAGGTTTGCT
AGTCTTTCAGGGCTAAAAACACTGGTAACGGCCACTGGTTACGGCCGGGG
GATTGCCGTCGAACGCATTCTCGATTCAAGCATCGCACCAATAAAGCCAC
GCAACTCAACAGCCCCCCTGCCACGCAACTCCGGTGCTCACCAGGCGAGT
CCACCCGCATTCCGCCGCCGAAACCACACCGGAAACGTCTACTTGTAGCA
GCCAGCGAACCCCTCAACTCCATTTACCCATGTTCCACGTTGCAACGCCT
TGGTTACGTTGCAAAAAAACAAATTATTAATGTCCCGTAGCTCGTGCCTT
TGCGAGCACGAGCGGGCAGAGAAAGCCGTTAGATCTGCCGCTGTCGTATG
CAAGGGCCACCGCCGCTGTTGTTGCGCAGTGTCTCAGCCGTACCCACACA
ACCGCAGCAACCACAACGCCTTCTTCCGTTTTTCACGTGCTGTATCTGCC
ACCGCTTTTGGGAAAATGTCGCTGTTTCCTCAAGCATCGGGAAGAGGAGG
CCGTGGACCTGGCGAGCCTCAGGGCCGGCGGCAACGCCAGCTCGTTCAAT
GCCGACGCTCACTGCCCGACGTGCCGAAAACAAGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig114:47880..48865+

>mRNA_Ecto-sp9_F_contig114.1201.1 ID=mRNA_Ecto-sp9_F_contig114.1201.1|Name=mRNA_Ecto-sp9_F_contig114.1201.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:47880..48865+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGATGGCCGGAAGGGAGGCCGCTTACGGGGACGCTTCCGACAGGT
CTTGGACAGGATGAGAGGGCGTGCTGCTGCGCCACCGCCTGTCGCCGTAG
CAGCGGCGGGGAACCAGATGATGTACGACCCGGGTCAGATGGAGGATGGC
CGGAAGGGAGGCCGCTTACGGGGACGCTTCCGACAGGTCTTGGACAGGAT
GAGAGGGCGTGCTGCTGCGCCACCGCCTGTCGCCGTAGCAGCGGCGGGGA
ACCAGATGATGTACGACCCGGGTCAGCATCGGGAAGAGGAGGCCGTGGAC
CTGGCGAGCCTCAGGGCCGGCGGCAACGCCAGCTCGTTCAATGCCGACGC
TCACTGCCCGACGTGCCGAAAACAAGTGCATCGGGAAGAGGAGGCCGTGG
ACCTGGCGAGCCTCAGGGCCGGCGGCAACGCCAGCTCGTTCAATGCCGAC
GCTCACTGCCCGACGTGCCGAAAACAAGTG
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