mRNA_Ecto-sp9_F_contig114.1200.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig114.1200.1
Unique NamemRNA_Ecto-sp9_F_contig114.1200.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig114.1200.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig114contigEcto-sp9_F_contig114:46575..47365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size242
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928388.3483155-CDS-Ecto-sp9_F_contig114:46574..466311622928388.3483155-CDS-Ecto-sp9_F_contig114:46574..46631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 46575..46631 +
1692277855.2299976-CDS-Ecto-sp9_F_contig114:46574..466311692277855.2299976-CDS-Ecto-sp9_F_contig114:46574..46631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 46575..46631 +
1622928388.364257-CDS-Ecto-sp9_F_contig114:47180..473631622928388.364257-CDS-Ecto-sp9_F_contig114:47180..47363Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 47181..47363 +
1692277855.2450545-CDS-Ecto-sp9_F_contig114:47180..473631692277855.2450545-CDS-Ecto-sp9_F_contig114:47180..47363Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig114 47181..47363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig114.1200.1prot_Ecto-sp9_F_contig114.1200.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig114 46575..47363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig114.1200.1

>prot_Ecto-sp9_F_contig114.1200.1 ID=prot_Ecto-sp9_F_contig114.1200.1|Name=mRNA_Ecto-sp9_F_contig114.1200.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp
SRLASLTLSGSVQRLSIVGEIYRSWVDDTPPRSRGKENMLPGPGYYRCWN
SSPDPQPPPPRKMPTNAEGKRKRAGIGATL
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mRNA from alignment at Ecto-sp9_F_contig114:46575..47365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig114.1200.1 ID=mRNA_Ecto-sp9_F_contig114.1200.1|Name=mRNA_Ecto-sp9_F_contig114.1200.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=791bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:46575..47365+ (Ectocarpus species9 EcSCA_722f female)
TCTCGACTGGCGTCCCTCACACTCTCAGGGTCAGTTCAACGTTTGTCAAT
TGTTGGGGTGAGTGTTCAGCCTTCTAGATTGACGTAGCCTGTACGCGTGT
AGCTCTGGAAGCATAGGTCGCGGCGGGCTGTGTTTGATGTTGTTGATGTC
GCAGTTGACACTCAGGGACAGCGTCATAGGCGTCACATAGCAGCAGCGTT
TCTGACGAGGTTCATTTGGATTGGCGCCTAGAGCTTGCGTTGTAGGGGGC
CGTAGCTGACGCTTTGTTTCCTCTTGGCTGTGACCAAGAGTATTCGGAAG
ACCGTCAGCATTGGACCCGGTTGAAAGAGAGTTGAACCACACTGACGCCG
ATCATGCTGATTGATCTTTCGAGGGCAATATATTTCCGATTGTCACTGCT
GAGCATGCACAGCTGCATCCAACTGCTGTGCCTACACGTGTCTATCGTCT
ATGCCAACGAGAGAGCATCAGCTACAAGTTGCAGGTCCGACACCCCCCCC
TGGGTTCTGTACTACACACACTGCACGCACATACCCGCAACCTTTCCCCA
CTCCCCCAATGTTTGGAACCAATTTGCAATTTTGCATGATTTTGTTCGGG
CAACAGGAGATATACCGTTCTTGGGTAGACGACACACCTCCAAGGAGCAG
AGGGAAGGAAAATATGCTCCCAGGGCCCGGCTATTACCGTTGTTGGAACA
GCAGCCCAGATCCCCAACCACCACCACCACGAAAGATGCCAACAAACGCC
GAGGGGAAGCGAAAACGTGCGGGCATTGGCGCCACTCTGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig114:46575..47365+

>mRNA_Ecto-sp9_F_contig114.1200.1 ID=mRNA_Ecto-sp9_F_contig114.1200.1|Name=mRNA_Ecto-sp9_F_contig114.1200.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:46575..47365+ (Ectocarpus species9 EcSCA_722f female)
TCTCGACTGGCGTCCCTCACACTCTCAGGGTCAGTTCAACGTTTGTCAAT
TGTTGGGTCTCGACTGGCGTCCCTCACACTCTCAGGGTCAGTTCAACGTT
TGTCAATTGTTGGGGAGATATACCGTTCTTGGGTAGACGACACACCTCCA
AGGAGCAGAGGGAAGGAAAATATGCTCCCAGGGCCCGGCTATTACCGTTG
TTGGAACAGCAGCCCAGATCCCCAACCACCACCACCACGAAAGATGCCAA
CAAACGCCGAGGGGAAGCGAAAACGTGCGGGCATTGGCGCCACTCTGGAG
ATATACCGTTCTTGGGTAGACGACACACCTCCAAGGAGCAGAGGGAAGGA
AAATATGCTCCCAGGGCCCGGCTATTACCGTTGTTGGAACAGCAGCCCAG
ATCCCCAACCACCACCACCACGAAAGATGCCAACAAACGCCGAGGGGAAG
CGAAAACGTGCGGGCATTGGCGCCACTCTG
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