mRNA_Ecto-sp9_F_contig114.1195.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB36_ECTSI) HSP 1 Score: 447 bits (1150), Expect = 2.840e-155 Identity = 250/337 (74.18%), Postives = 261/337 (77.45%), Query Frame = 1
Query: 1 MSPLMFAAEKGSSSVVKILLKYGANVSIKENGGFTALHLSAQHGHPAVTRLLAATGAMEGDALIEAGANVNSRVLDGATPLLIASTQGYKDAIKVLLRAKADPQLQQNTSGNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLL-TGAGVVDTGGALIAAADYGGVVFVKHLLQRQKQTAAERKAYVNAPGLFGATPLLWSIQACRPCSSRIARFLLTPVRTPHRLSRWRTCRDLGSWPTRPWRSQCAGSVGRRSREKK--ILATSSCAA*RPSAACCCKWKQFVRSLGCGLATIPPSLTLLQRAQAEPPELGLR 1002
MSPLMFAAEKGS SVVKILLKYGANVSIKENGGFTALHLSAQHGHPA+T PLLIASTQGYKDA KVLLRAK DPQLQQNTSGNLFVPL++LATRGDS+AVRELFRH DIDGCGGPSRGVNALVTAARDKHVDIMVLL T AGVVDTGGALI AA YGGVV V+HLLQRQKQTAAERKAYVNAPGLFGATPLLWSIQACRPCSSRIAR L+ + G P + + R+ E K I+ATSSCAA RPSAACCCKWKQFVRSLGCGLATIPPSLTLLQRAQAEPPELGLR
Sbjct: 1 MSPLMFAAEKGSCSVVKILLKYGANVSIKENGGFTALHLSAQHGHPALTTAXXXXXXXXXXXXXXXX-XXXXXXXXXXXPLLIASTQGYKDASKVLLRAKVDPQLQQNTSGNLFVPLNMLATRGDSDAVRELFRHVDIDGCGGPSRGVNALVTAARDKHVDIMVLLLTDAGVVDTGGALITAAHYGGVVSVEHLLQRQKQTAAERKAYVNAPGLFGATPLLWSIQACRPCSSRIARLLVDAGADTTSTVTMADVQGFGLMAYTP-KEIAIRRIRRKKVEGKEDIVATSSCAAWRPSAACCCKWKQFVRSLGCGLATIPPSLTLLQRAQAEPPELGLR 335
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 145 bits (367), Expect = 1.630e-36 Identity = 87/173 (50.29%), Postives = 108/173 (62.43%), Query Frame = 1
Query: 205 NVNSRVLDGATPLLIASTQGYKDAIKVLLRAKADPQLQQ--NTSGNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLLTGAGVVDTGGALIAAADYGGVVFVKHLLQRQK-QTAAERKAYVNAPGLFGATPLLWSIQACRPCSSRIARFLL 714
N+NSR DGATPL A+ +G DA ++LL AKADP L + SG F+PLD A G V EL R IDGCGG S GV AL AA+ K+++IMV+LT AGVVDTG AL+ AA YGG +K LL++ + + + AYVN G TPLLW IQ RP R+ R L+
Sbjct: 140 NLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYRP---RVVRLLV 309
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ94_9PHAE) HSP 1 Score: 139 bits (351), Expect = 2.390e-36 Identity = 71/87 (81.61%), Postives = 76/87 (87.36%), Query Frame = 1
Query: 184 ALIEAGANVNSRVLDGATPLLIASTQGYKDAIKVLLRAKADPQLQQNTSGNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGV 444
ALIEAGANVNSR+LDGAT +LIASTQGYKDAI VLLRAKADPQLQ NTSGNL VP D A RGDS+AVREL RH I+GCGGPSRG+
Sbjct: 46 ALIEAGANVNSRMLDGATLMLIASTQGYKDAIPVLLRAKADPQLQHNTSGNLVVPSDTSAIRGDSDAVRELIRHVGIEGCGGPSRGI 132
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 142 bits (358), Expect = 4.160e-35 Identity = 99/253 (39.13%), Postives = 131/253 (51.78%), Query Frame = 1
Query: 4 SPLMFAAEKGSSSVVKILLKYGANVSIKENGGF----------------------TALHLSAQHGHPAVTRLLAATG-AMEGDALIEAGANVNSRVLDGATPLLIASTQGYKDAIKVLLRAKADPQLQ--QNTSGNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLLTGAGVVDTGGALIAAADYGGVVFVKHLLQRQK-QTAAERKAYVNAPGLFGATPLLWSIQACRP 684
+PLM A+ G +V++LL GA V + + L + + H A TG A AL++AG+N+N+R DGATPL A+ G A+ +LL AKADP L ++ F+PLD+ A G V EL R IDGCGG S G NAL AA +DIM +LT AGVVDTG AL+ AA YGG +K LL++ + + + +R AY+N G T LL IQ CRP
Sbjct: 50 TPLMMASRGGYPRIVRMLLNKGAQVWVTDXXXXXXXXXXXXXXXXXXXXXXXXXXALLDAATKQNHCTPLDCAAETGCAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCRP 302
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.150e-34 Identity = 103/265 (38.87%), Postives = 140/265 (52.83%), Query Frame = 1
Query: 4 SPLMFAAEKGSSSVVKILLKYGANVSIKENGGFTALHLS-AQHGHPAVTRLLAATGAM-------EGDALIEAGA----------------NVNSRVLDGATPLLIASTQGYKDAIKVLLRAKADPQL-QQNTSGNLF-VPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLLTGAGVVDTGGALIAAADYGGVVFVKHLLQRQKQTAA--ERKAYVNAPGLFGATPLLWSIQACRPCSSRIARFLL 714
+PLM A G S + K+L+K GANVSI + GFTALH A+ A+ +LLA GA EG A + N + ++ DG+T L IA+ +G ++ LLR A+P L Q + GN VPLD+ A G ++ VREL + I+GC S G +AL AA ++H+DIM +LT AGVVDTG AL AA G VK LL+ + + AY+NA + G TPL+ Q C + RI R L+
Sbjct: 141 TPLMMAVHNGHSRIAKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTALHIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLV 405
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ9_ECTSI) HSP 1 Score: 121 bits (303), Expect = 2.190e-29 Identity = 94/205 (45.85%), Postives = 116/205 (56.59%), Query Frame = 1
Query: 13 MFAAEKGSSSVVKILLKYGANVSIKENGGFTALHLSAQHGHPAVTRLLAATGAMEG-DALIEAGANVNSRVLDGATP--LLIASTQGYKDAIKVLLRAKADPQLQ----QNTSGNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLLTGAGVVDTGG-ALIAAADYGGVVFVKHLL-QRQKQT 600
M AA G S +VKILL+ GANVS + G TALH +++ P L G+ E ALIEAGAN + R A IA+ G D ++ LLR KA+P L+ ++ G PLDI A G S+ VREL I+GC G AL AA D+HVDIM +LTGAGVVDT G ALI AA +G V K LL QR K++
Sbjct: 1 MMAAMMGYSHIVKILLEKGANVSSVADPGITALHATSEGCTP--LHLATEKGSPEAVRALIEAGANPDRRTPTSAWHRCTYIAARSGPLDTLRELLRLKANPLLEFEPPPSSVGCGSAPLDIAAQNGHSDIVRELVEQLGIEGCDPKKGGEPALHVAASDQHVDIMAILTGAGVVDTTGLALIGAAGHGREVSAKFLLRQRHKES 203
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.550e-28 Identity = 106/267 (39.70%), Postives = 124/267 (46.44%), Query Frame = 1
Query: 4 SPLMFAAEKGSSSVVKILLKYGANVSIKENGGFTALHLSAQHG-HPAVTR---------------------LLAATGAME-GDALIEAGANVNSRVLDGATPLLIASTQGYKDAIKVLLRAKADPQLQQNT-SGNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLLTGAGVVDTGGALIAAADYGGVVFVKHLLQRQKQTAA--ERKAYVN-APGLFGATPLLWSIQ---ACRPCSSRIARFLL 714
+PLM AA +GSS VV+ILL GANVS+ G TALH S Q G HP VT L A G E RAKA+P L + T SG FVPLD A G + VREL + I GCGG S GV AL AA ++VD+M +L AGV+DTG ALI AA VK LLQ++ T+A E YVN L G TPLL SI A CS R+ R L+
Sbjct: 52 TPLMLAAWRGSSRVVRILLNKGANVSVVAEDGHTALHFSTQDGGHPVVTXXXXXXXXXXXXXXXXXXXXXXLAANAGCWEVAQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKANPLLTKPTPSGVTFVPLDTAAEYGQTEVVRELIKQVSIKGCGGASGGVYALRLAALSQNVDVMSVLADAGVMDTGEALITAAGRNDEAGVKLLLQQRHGTSAGGELYMYVNDTHDLVGRTPLLCSIDGGMAGFRCSPRVVRLLV 318
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.320e-27 Identity = 102/256 (39.84%), Postives = 132/256 (51.56%), Query Frame = 1
Query: 4 SPLMFAAEKGSSSVVKILLKYGANVSIKENGGFTALHLSAQHGHPAVTRLLAATGA------MEGDA-LIEAGANVNSRVLDGATPLLIASTQGYKDAIKVLLRAKADPQLQQNTSGNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLLTGAGVVDTGG-ALIAAADYGGVVFVKHLLQRQKQTA-AERKAYVN----------APGLFGATPLLWSIQACRPCSSRIARFLL 714
+PLM A+ G V ++LL+ GA VS+ +N G TALHLS + H AV++ L GA ++G LI AGANV+S GATPL ++ QG + +KVL+ KA+P + +L PLD A G VREL + IDGC G ALV AA DI+ L GVVD G AL AA + FVK LL+RQ A +AY N + LF TPL+ + + S RI R LL
Sbjct: 33 TPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDGMVVLIHAGANVDSEQESGATPLYTSARQGRLEDVKVLVGTKANPLVPAYDGESL--PLDAAAENGYLGVVRELVQRFGIDGCSRDG-GAQALVEAASQNQTDIVTFLFDNGVVDAEGIALCAAVEGRREEFVKLLLRRQGCNANTSTRAYANMAHDSTLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLL 285
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI) HSP 1 Score: 116 bits (291), Expect = 6.530e-27 Identity = 87/231 (37.66%), Postives = 115/231 (49.78%), Query Frame = 1
Query: 4 SPLMFAAEKGSSSVVKILLKYGANVSIKENGGFTALHLSAQHG-HPAVTRLLAATGAMEGDALIEAGANVNSRVLDGATPLLIASTQGYKDAIKVLL---------------------------------RAKADPQLQQNTS-GNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLLTGAGVVDTGGALIAAADYGGVVFVKHLLQRQ 591
+PLM AA +GSS VV+IL GANVS+ + TALH S Q G HP VT++L ++AGA+ + +G TPL + + G + RAKA+P L + TS G FVPLD A G + V+EL + I GCGG S GV+AL AA ++VD+M +L GV+DTG ALI AA VK LLQ++
Sbjct: 52 TPLMLAAWRGSSRVVRILPNKGANVSVVADDFHTALHFSTQDGGHPVVTKML-----------LKAGADFEAVTSEGETPLHLVADSGCWEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKANPLLTKPTSSGVTFVPLDTAAEYGQTEVVQELVQQVSIKGCGGASGGVDALRLAALSQNVDVMAVLADVGVMDTGEALITAAGRNDEAGVKLLLQQR 271
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.000e-25 Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 187 LIEAGANVNSRVLDGATPLLIASTQGYKDAIKVLLRAKADPQLQQN--TSGNLFVPLDILATRGDSNAVRELFRHADIDGCGGPSRGVNALVTAARDKHVDIMVLLTGAGVVDTG 525
L+EAGAN+NSR DGATPL +A+ +G DA+++LL AK DP L + TS +PLD+ A G V EL R I GCGG S GV AL AAR+KH+D++ +LT AGVVDTG
Sbjct: 36 LLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDTG 150 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig114.1195.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig114.1195.1 >prot_Ecto-sp9_F_contig114.1195.1 ID=prot_Ecto-sp9_F_contig114.1195.1|Name=mRNA_Ecto-sp9_F_contig114.1195.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=290bp MSPLMFAAEKGSSSVVKILLKYGANVSIKENGGFTALHLSAQHGHPAVTRback to top mRNA from alignment at Ecto-sp9_F_contig114:17731..18794+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig114.1195.1 ID=mRNA_Ecto-sp9_F_contig114.1195.1|Name=mRNA_Ecto-sp9_F_contig114.1195.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1064bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:17731..18794+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig114:17731..18794+ >mRNA_Ecto-sp9_F_contig114.1195.1 ID=mRNA_Ecto-sp9_F_contig114.1195.1|Name=mRNA_Ecto-sp9_F_contig114.1195.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1740bp|location=Sequence derived from alignment at Ecto-sp9_F_contig114:17731..18794+ (Ectocarpus species9 EcSCA_722f female)back to top |